# Jmol state version 11.8.24  2010-04-26 08:00;

function _setWindowState() {
# height 587;
# width 753;
  stateVersion = 1108024;
  background [xffffff];
  axis1Color = "[xff0000]";
  axis2Color = "[x008000]";
  axis3Color = "[x0000ff]";
  ambientPercent = 45;
  diffusePercent = 84;
  specular = true;
  specularPercent = 22;
  specularPower = 40;
  specularExponent = 6;
  statusReporting  = true;
}

function _setFileState() {

  set allowEmbeddedScripts false;
  set autoBond true;
  set appendNew true;
  set appletProxy "";
  set applySymmetryToBonds false;
  set bondRadiusMilliAngstroms 150;
  set bondTolerance 0.45;
  set defaultLattice {0.0 0.0 0.0};
  set defaultLoadScript "";
  set defaultVDW Jmol;
  set forceAutoBond false;
  set loadFormat "http://www.rcsb.org/pdb/files/%FILE.pdb";
  set minBondDistance 0.4;
  set pdbSequential false;
  set pdbGetHeader false;
  set percentVdwAtom 20;
  set smartAromatic true;
  load /*file*/"C:/Users/Lera/Downloads/3ET3.pdb.gz";

}

function _setVariableState() {

   set defaultanglelabel "%VALUE %UNITS";
   set defaultcolorscheme "jmol";
   set defaultdistancelabel "%VALUE %UNITS";
   set defaultdrawarrowscale 0.5;
   set defaultlattice "{0.0 0.0 0.0}";
   set defaultloadscript "";
   set defaulttorsionlabel "%VALUE %UNITS";
   set defaulttranslucent 0.5;
   set defaultvdw "Jmol";
  set allowembeddedscripts true;
  set allowkeystrokes false;
  set allowrotateselected false;
  set appletproxy "";
  set applysymmetrytobonds false;
  set atompicking true;
  set atomtypes "";
  set autobond true;
  set autofps false;
  set autoloadorientation false;
  set axes window;
  set axesmode 0;
  set axesscale 2.0;
  set bondmodeor false;
  set bondpicking false;
  set bondradiusmilliangstroms 150;
  set bondtolerance 0.45;
  set cartoonrockets false;
  set chaincasesensitive false;
  set dataseparator "~~~";
  set delaymaximumms 0;
  set dipolescale 1.0;
  set disablepopupmenu false;
  set displaycellparameters true;
  set dotdensity 3;
  set dotsselectedonly false;
  set dotsurface true;
  set dragselected false;
  set drawhover false;
  set drawpicking false;
  set dynamicmeasurements false;
  set ellipsoidarcs false;
  set ellipsoidaxes false;
  set ellipsoidaxisdiameter 0.02;
  set ellipsoidball true;
  set ellipsoiddotcount 200;
  set ellipsoiddots false;
  set ellipsoidfill false;
  set fontcaching true;
  set forceautobond false;
  set greyscalerendering false;
  set hbondsangleminimum 90.0;
  set hbondsbackbone false;
  set hbondsdistancemaximum 3.25;
  set hbondssolid false;
  set helixstep 1;
  set helppath "http://chemapps.stolaf.edu/jmol/docs/index.htm";
  set hermitelevel 0;
  set hidenameinpopup false;
  set hidenavigationpoint false;
  set highresolution false;
  set historylevel 0;
  set hoverdelay 0.5;
  set imagestate true;
  set isosurfacepropertysmoothing true;
  set justifymeasurements false;
  set loadatomdatatolerance 0.01;
  set loadformat "http://www.rcsb.org/pdb/files/%FILE.pdb";
  set measureallmodels false;
  set measurementlabels true;
  set messagestylechime false;
  set minbonddistance 0.4;
  set navigatesurface false;
  set navigationperiodic false;
  set navigationspeed 5.0;
  set pdbgetheader false;
  set pdbsequential false;
  set percentvdwatom 20;
  set pickingspinrate 10;
  set picklabel "";
  set pointgroupdistancetolerance 0.2;
  set pointgrouplineartolerance 8.0;
  set propertyatomnumbercolumncount 0;
  set propertyatomnumberfield 0;
  set propertycolorscheme "roygb";
  set propertydatacolumncount 0;
  set propertydatafield 0;
  set quaternionframe "p";
  set rangeselected false;
  set ribbonaspectratio 16;
  set ribbonborder false;
  set rocketbarrels false;
  set selectallmodels true;
  set selecthetero true;
  set selecthydrogen true;
  set sheetsmoothing 1.0;
  set showhiddenselectionhalos false;
  set showhydrogens true;
  set showkeystrokes true;
  set showmeasurements true;
  set showmultiplebonds true;
  set shownavigationpointalways false;
  set smartaromatic true;
  set solventprobe false;
  set solventproberadius 1.2;
  set ssbondsbackbone false;
  set stereodegrees -5.0;
  set strandcountformeshribbon 7;
  set strandcountforstrands 5;
  set testflag1 false;
  set testflag2 false;
  set testflag3 false;
  set testflag4 false;
  set tracealpha true;
  set useminimizationthread true;
  set usenumberlocalization true;
  set vectorscale 1.0;
  set vibrationperiod 0.5;
  set vibrationscale 0.5;
  set wireframerotation false;
  set zoomlarge true;

#user-defined variables; 
  @site_1 ({497:515 529:534 555:571 830:839 865:876 1149:1167 1184:1192 1838:1847 1872:1879 2034:2045 2399 2434});
  @site_ac1 ({497:515 529:534 555:571 830:839 865:876 1149:1167 1184:1192 1838:1847 1872:1879 2034:2045 2399 2434});
  site_ac1 = ["[ILE]281:A", "[PHE]282:A", "[CYS]285:A", "[ARG]288:A", "[SER]289:A", "[HIS]323:A", "[TYR]327:A", "[PHE]363:A", "[MET]364:A", "[LYS]367:A", "[HIS]449:A", "[LEU]453:A", "[TYR]473:A", "[HOH]627:A", "[HOH]662:A"];
  site_list = ["site_AC1"];

# label defaults;
  select none;
  color label none;
  background label none;
  set labelOffset 4 4;
  set labelAlignment left;
  set labelPointer off;
  font label 13.0 SansSerif Plain;

}

function _setModelState() {

  select ({2223:2249});
  color atoms opaque [x00ffff];
  select ({0:2222 2250:2466});
  color atoms opaque [x8a2be2];
  select ({0:2466});
  Spacefill 0.0;
  select BONDS ({0:2287});
  wireframe 0.0;

  measures delete;
  select *; set measures nanometers;
  font measures 15.0 SansSerif Plain;
  select measures ({null});

  select ({0:2222});
  Ribbons on;

  isosurface delete resolution 0 solvent 0 translucent;# ({336:343 386:393 497:515 525:543 555:571 588:592 830:839 857:876 892:899 956:962 971:984 1022:1029 1037:1047 1057:1075 1126:1136 1149:1176 1184:1192 1807:1821 1838:1847 1864:1879 1967:1974 2000:2007 2017:2025 2034:2045}) ({2250:2466})# ID="isosurface1"# MODEL({0});
  isosurface ID "isosurface1" fill noMesh noDots notFrontOnly frontlit;
  color isosurface opaque [xffa500];

  boundBox off;

  unitcell off;

  hover "%U";

  frank on;
  font frank 16.0 SansSerif Bold;
  set fontScaling false;

}

function _setPerspectiveState() {
  set perspectiveModel 11;
  set scaleAngstromsPerInch 0.0;
  set perspectiveDepth true;
  set visualRange 5.0;
  set cameraDepth 3.0;
  boundbox corners {8.962997 4.1360016 50.843002} {61.429 65.05701 96.34801} # volume = 145446.81;
  center {35.196 34.596504 73.595505};
  moveto 0.0 { -748 477 461 32.61} 100.0 0.21 0.27 {35.196 34.596504 73.595505} 35.77759 {0.0 0.0 0.0} -44.389008 106.86626 0.0;;
  slab 100;depth 0;
  set spinX 0; set spinY 30; set spinZ 0; set spinFps 30;  set navX 0; set navY 0; set navZ 0; set navFps 10;
}

function _setSelectionState() {
  select ({336:343 386:393 497:515 525:543 555:571 588:592 830:839 857:876 892:899 956:962 971:984 1022:1029 1037:1047 1057:1075 1126:1136 1149:1176 1184:1192 1807:1821 1838:1847 1864:1879 1967:1974 2000:2007 2017:2025 2034:2045});
  set hideNotSelected false;
}

function _setState() {
  initialize;
  set refreshing false;
  _setWindowState;
  _setFileState;
  _setVariableState;
  _setModelState;
  _setPerspectiveState;
  _setSelectionState;
  set refreshing true;
  set antialiasDisplay false;
  set antialiasTranslucent true;
  set antialiasImages true;
}

_setState;