1bbx - Revision history

OCA at 11:36, 22 November 2023

2023-11-22T11:36:03Z

←Older revision		Revision as of 11:36, 22 November 2023
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	==NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE==		==NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE==
-	<StructureSection load='1bbx' size='340' side='right'caption='[[1bbx~~]], [[NMR_Ensembles_of_Models \| 1 NMR models~~]]' scene=''>	+	<StructureSection load='1bbx' size='340' side='right'caption='[[1bbx]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_35091 Atcc 35091~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BBX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BBX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [https://pdbe.org/1bbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [https://www.ebi.ac.uk/pdbsum/1bbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bbx ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [https://pdbe.org/1bbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [https://www.ebi.ac.uk/pdbsum/1bbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bbx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~DN72_SULSO DN72_SULSO~~]~~] Constrain~~ negative DNA supercoils~~; may~~ be involved in maintaining the integrity of ~~their~~ genome at high temperature. Stimulates the Holliday junction cleavage activity of Hjc.<ref>PMID:11709558</ref>	+	[https://www.uniprot.org/uniprot/DN7D_SACS2 DN7D_SACS2] Can constrain negative DNA supercoils. May be involved in maintaining the integrity of the genome at high temperature (By similarity). Stimulates the Holliday junction cleavage activity of Hjc (PubMed:11709558).[UniProtKB:P61990]<ref>PMID:11709558</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 35091]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Agback, P]]	+	[[Category: Saccharolobus solfataricus]]
-	[[Category: Baumann, H]]	+	[[Category: Agback P]]
-	[[Category: Hard, T]]	+	[[Category: Baumann H]]
-	[[Category: Knapp, S]]	+	[[Category: Hard T]]
-	[[Category: Ladenstein, R]]	+	[[Category: Knapp S]]
-	~~[[Category: Dna binding protein-dna complex]]~~	+	[[Category: Ladenstein R]]
-	~~[[Category: Nonspecific protein-dna interaction]]~~	+
-	~~[[Category: Protein-dna interaction~~]]	+

OCA at 10:27, 16 February 2022

2022-02-16T10:27:09Z

←Older revision		Revision as of 10:27, 16 February 2022
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	<StructureSection load='1bbx' size='340' side='right'caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1bbx' size='340' side='right'caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BBX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BBX FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [https://pdbe.org/1bbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [https://www.ebi.ac.uk/pdbsum/1bbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bbx ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [https://pdbe.org/1bbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [https://www.ebi.ac.uk/pdbsum/1bbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bbx ProSAT]</span></td></tr>
	</table>		</table>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc 35091]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Agback, P]]		[[Category: Agback, P]]

OCA at 06:58, 24 February 2021

2021-02-24T06:58:24Z

←Older revision		Revision as of 06:58, 24 February 2021
Line 3:		Line 3:
	<StructureSection load='1bbx' size='340' side='right'caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1bbx' size='340' side='right'caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1BBX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BBX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [~~http~~://pdbe.org/1bbx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1bbx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1bbx ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [https://pdbe.org/1bbx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [https://www.ebi.ac.uk/pdbsum/1bbx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bbx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DN72_SULSO DN72_SULSO]] Constrain negative DNA supercoils; may be involved in maintaining the integrity of their genome at high temperature. Stimulates the Holliday junction cleavage activity of Hjc.<ref>PMID:11709558</ref>	+	[[https://www.uniprot.org/uniprot/DN72_SULSO DN72_SULSO]] Constrain negative DNA supercoils; may be involved in maintaining the integrity of their genome at high temperature. Stimulates the Holliday junction cleavage activity of Hjc.<ref>PMID:11709558</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 08:43, 21 May 2019

2019-05-21T08:43:54Z

←Older revision		Revision as of 08:43, 21 May 2019
Line 1:		Line 1:

	==NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE==		==NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE==
-	<StructureSection load='1bbx' size='340' side='right' caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>	+	<StructureSection load='1bbx' size='340' side='right'caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Agback, P]]		[[Category: Agback, P]]
	[[Category: Baumann, H]]		[[Category: Baumann, H]]

OCA at 06:08, 17 August 2017

2017-08-17T06:08:12Z

←Older revision		Revision as of 06:08, 17 August 2017
Line 1:		Line 1:
		+
	==NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE==		==NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE==
	<StructureSection load='1bbx' size='340' side='right' caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1bbx' size='340' side='right' caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure ~~with sequence from [http://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]~~. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://pdbe.org/1bbx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://pdbe.org/1bbx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1bbx ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 35091]]
	[[Category: Agback, P]]		[[Category: Agback, P]]
	[[Category: Baumann, H]]		[[Category: Baumann, H]]

OCA at 17:42, 10 September 2015

2015-09-10T17:42:39Z

←Older revision		Revision as of 17:42, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1bbx' size='340' side='right' caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>		<StructureSection load='1bbx' size='340' side='right' caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sulfolobus_solfataricus Sulfolobus solfataricus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://pdbe.org/1bbx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1bbx" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Sulfolobus solfataricus~~]]	+	[[Category: Atcc 35091]]
	[[Category: Agback, P]]		[[Category: Agback, P]]
	[[Category: Baumann, H]]		[[Category: Baumann, H]]

OCA at 03:46, 25 December 2014

2014-12-25T03:46:24Z

←Older revision		Revision as of 03:46, 25 December 2014
Line 5:		Line 5:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DN72_SULSO DN72_SULSO]] Constrain negative DNA supercoils; may be involved in maintaining the integrity of their genome at high temperature. Stimulates the Holliday junction cleavage activity of Hjc.<ref>PMID:11709558</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 10:40, 22 December 2014

2014-12-22T10:40:12Z

←Older revision		Revision as of 10:40, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>		<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 18:		Line 18:
	</StructureSection>		</StructureSection>
	[[Category: Sulfolobus solfataricus]]		[[Category: Sulfolobus solfataricus]]
-	[[Category: Agback, P.]]	+	[[Category: Agback, P]]
-	[[Category: Baumann, H.]]	+	[[Category: Baumann, H]]
-	[[Category: Hard, T.]]	+	[[Category: Hard, T]]
-	[[Category: Knapp, S.]]	+	[[Category: Knapp, S]]
-	[[Category: Ladenstein, R.]]	+	[[Category: Ladenstein, R]]
	[[Category: Dna binding protein-dna complex]]		[[Category: Dna binding protein-dna complex]]
	[[Category: Nonspecific protein-dna interaction]]		[[Category: Nonspecific protein-dna interaction]]
	[[Category: Protein-dna interaction]]		[[Category: Protein-dna interaction]]

OCA at 03:15, 7 August 2014

2014-08-07T03:15:05Z

←Older revision		Revision as of 03:15, 7 August 2014
Line 1:		Line 1:
-	[[~~Image~~:1bbx.~~png\|left\|200px~~]]	+	==NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX, NMR, 1 STRUCTURE==
		+	<StructureSection load='1bbx' size='340' side='right' caption='[[1bbx]], [[NMR_Ensembles_of_Models \| 1 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1bbx]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1BBX FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1bbx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bbx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1bbx RCSB], [http://www.ebi.ac.uk/pdbsum/1bbx PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Many biochemical processes, including DNA packing, maintenance and control, rely on non-sequence specific protein-DNA interactions. Nonspecific DNA-binding proteins have evolved to tolerate a wide range of DNA sequences, yet bind with a respectable affinity. The nonspecific binding requirement is in contrast to that imposed on, for example, transcription factors and implies a different structural basis for the biomolecular recognition process. To address this issue, and the mechanism for archaeal DNA packing, we determined the structure of the Sso7d protein from Sulfolobus solfataricus in complex with DNA. Sso7d binds DNA by placing a triple-stranded beta-sheet across the DNA minor groove. The protein is anchored in this position by the insertion of hydrogen bond-donating side chains into the groove and additionally stabilized by electrostatic and non-polar interactions with the DNA backbone. This structure explains how strong binding can be achieved independent of DNA sequence. Sso7d binding also distorts the DNA conformation and introduces significant unwinding of the helix. This effect suggests a mechanism for DNA packing in Sulfolobus based on negative DNA supercoiling.

-	~~{{STRUCTURE_1bbx\| PDB=1bbx \| SCENE= }}~~	+	Architecture of nonspecific protein-DNA interactions in the Sso7d-DNA complex.,Agback P, Baumann H, Knapp S, Ladenstein R, Hard T Nat Struct Biol. 1998 Jul;5(7):579-84. PMID:9665172<ref>PMID:9665172</ref>

-	~~===NON-SPECIFIC PROTEIN-DNA INTERACTIONS IN THE SSO7D-DNA COMPLEX~~, ~~NMR, 1 STRUCTURE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9665172}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[1bbx]] is a 4 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BBX OCA].~~	+	</StructureSection>
	[[Category: Sulfolobus solfataricus]]		[[Category: Sulfolobus solfataricus]]
	[[Category: Agback, P.]]		[[Category: Agback, P.]]

OCA: Protected "1bbx" [edit=sysop:move=sysop]

2012-10-21T14:31:12Z

Protected "1bbx" [edit=sysop:move=sysop]

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Revision as of 14:31, 21 October 2012