1dcr - Revision history

OCA at 05:56, 9 August 2023

2023-08-09T05:56:25Z

←Older revision		Revision as of 05:56, 9 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DCR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DCR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [https://pdbe.org/1dcr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [https://www.ebi.ac.uk/pdbsum/1dcr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dcr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [https://pdbe.org/1dcr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [https://www.ebi.ac.uk/pdbsum/1dcr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dcr ProSAT]</span></td></tr>
	</table>		</table>

OCA at 10:36, 14 December 2022

2022-12-14T10:36:10Z

←Older revision		Revision as of 10:36, 14 December 2022
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DCR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DCR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:~~MAGNESIUM+ION~~'>MG</scene>, <scene name='pdbligand=NA:~~SODIUM~~+ION'>NA</scene>, <scene name='pdbligand=~~SPM~~:~~SPERMINE~~'>~~SPM~~</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~BRU~~:~~5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE~~'>~~BRU~~</scene~~></td></tr>~~	+
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1d9r\|1d9r]], [[1d8x\|1d8x]]</div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [https://pdbe.org/1dcr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [https://www.ebi.ac.uk/pdbsum/1dcr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dcr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [https://pdbe.org/1dcr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [https://www.ebi.ac.uk/pdbsum/1dcr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dcr ProSAT]</span></td></tr>
	</table>		</table>
Line 23:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Gao, Y G]]	+	[[Category: Gao Y-G]]
-	[[Category: Joachimiak, A]]	+	[[Category: Joachimiak A]]
-	[[Category: Robinson, H]]	+	[[Category: Robinson H]]
-	[[Category: Sanishvili, R]]	+	[[Category: Sanishvili R]]
-	[[Category: Wang~~, A H.~~J]]	+	[[Category: Wang AH-J]]
-	~~[[Category: Deoxyribonucleic acid]]~~	+
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Ga mismatch]]~~	+
-	~~[[Category: Tandem ga base pair~~]]	+

OCA at 18:24, 10 March 2021

2021-03-10T18:24:46Z

←Older revision		Revision as of 18:24, 10 March 2021
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	<StructureSection load='1dcr' size='340' side='right'caption='[[1dcr]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1dcr' size='340' side='right'caption='[[1dcr]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1DCR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DCR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d9r\|1d9r]], [[1d8x\|1d8x]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1d9r\|1d9r]], [[1d8x\|1d8x]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [~~http~~://pdbe.org/1dcr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1dcr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1dcr ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [https://pdbe.org/1dcr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [https://www.ebi.ac.uk/pdbsum/1dcr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dcr ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:56, 5 June 2019

2019-06-05T23:56:41Z

←Older revision		Revision as of 23:56, 5 June 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS==		==CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS==
-	<StructureSection load='1dcr' size='340' side='right' caption='[[1dcr]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='1dcr' size='340' side='right'caption='[[1dcr]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DCR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DCR FirstGlance]. <br>
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Gao, Y G]]		[[Category: Gao, Y G]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 04:02, 30 August 2017

2017-08-30T04:02:00Z

←Older revision		Revision as of 04:02, 30 August 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS==		==CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS==
	<StructureSection load='1dcr' size='340' side='right' caption='[[1dcr]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1dcr' size='340' side='right' caption='[[1dcr]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d9r\|1d9r]], [[1d8x\|1d8x]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d9r\|1d9r]], [[1d8x\|1d8x]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [http://pdbe.org/1dcr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [http://www.ebi.ac.uk/pdbsum/1dcr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [http://pdbe.org/1dcr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [http://www.ebi.ac.uk/pdbsum/1dcr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1dcr ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 18:42, 10 September 2015

2015-09-10T18:42:11Z

←Older revision		Revision as of 18:42, 10 September 2015
Line 6:		Line 6:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d9r\|1d9r]], [[1d8x\|1d8x]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d9r\|1d9r]], [[1d8x\|1d8x]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [http://www.ebi.ac.uk/pdbsum/1dcr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [http://pdbe.org/1dcr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [http://www.ebi.ac.uk/pdbsum/1dcr PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1dcr" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 21:20, 22 December 2014

2014-12-22T21:20:39Z

←Older revision		Revision as of 21:20, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DCR FirstGlance]. <br>		<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DCR FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d9r\|1d9r]], [[1d8x\|1d8x]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d9r\|1d9r]], [[1d8x\|1d8x]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [http://www.ebi.ac.uk/pdbsum/1dcr PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [http://www.ebi.ac.uk/pdbsum/1dcr PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Gao, Y G.]]	+	[[Category: Gao, Y G]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Robinson, H.]]	+	[[Category: Robinson, H]]
-	[[Category: Sanishvili, R.]]	+	[[Category: Sanishvili, R]]
-	[[Category: Wang, A H.J.]]	+	[[Category: Wang, A H.J]]
	[[Category: Deoxyribonucleic acid]]		[[Category: Deoxyribonucleic acid]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Ga mismatch]]		[[Category: Ga mismatch]]
	[[Category: Tandem ga base pair]]		[[Category: Tandem ga base pair]]

OCA at 06:28, 4 September 2014

2014-09-04T06:28:56Z

←Older revision		Revision as of 06:28, 4 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1dcr.~~png~~\|~~left~~\|~~200px~~]]	+	==CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS==
		+	<StructureSection load='1dcr' size='340' side='right' caption='[[1dcr]], [[Resolution\|resolution]] 1.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1DCR FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=BRU:5-BROMO-2-DEOXYURIDINE-5-MONOPHOSPHATE'>BRU</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1d9r\|1d9r]], [[1d8x\|1d8x]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1dcr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dcr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1dcr RCSB], [http://www.ebi.ac.uk/pdbsum/1dcr PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	G x A mismatched base pairs are frequently found in nucleic acids. Human centromere DNA sequences contain unusual repeating motifs, e.g. , (GAATG)n x (CATTC)n found in the human chromosome. The purine-rich strand of this repeating pentamer sequence forms duplex and hairpin structures with unusual stability. The high stability of these structures is contributed by the "sheared" G x A base pairs which present a novel recognition surface for ligands and proteins. We have solved the crystal structure, by the multiple-wavelength anomalous diffraction (MAD) method of d(CCGAATGAGG) in which the centromere core sequence motif GAATG is embedded. Three crystal forms were refined to near-atomic resolution. The structures reveal the detailed conformation of tandem G x A base pairs whose unique hydrogen-bonding surface has interesting interactions with bases, hydrated magnesium ions, cobalt(III)hexaammine, spermine, and water molecules. The results are relevant in understanding the structure associated with human centromere sequence in particular and G x A base pairs in nucleic acids (including RNA, like ribozyme) in general.

-	~~{{STRUCTURE_1dcr\| PDB=1dcr \| SCENE= }}~~	+	Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution.,Gao YG, Robinson H, Sanishvili R, Joachimiak A, Wang AH Biochemistry. 1999 Dec 14;38(50):16452-60. PMID:10600106<ref>PMID:10600106</ref>

-	~~===CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10600106}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1dcr]] is~~ a ~~2 chain structure~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=1DCR OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:010600106<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Gao, Y G.]]		[[Category: Gao, Y G.]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]

OCA: Protected "1dcr" [edit=sysop:move=sysop]

2012-10-21T20:28:00Z

Protected "1dcr" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:28, 21 October 2012

OCA at 20:27, 21 October 2012

2012-10-21T20:27:58Z

←Older revision		Revision as of 20:27, 21 October 2012
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-	{{Seed}}
	[[Image:1dcr.png\|left\|200px]]		[[Image:1dcr.png\|left\|200px]]

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	{{STRUCTURE_1dcr\| PDB=1dcr \| SCENE= }}		{{STRUCTURE_1dcr\| PDB=1dcr \| SCENE= }}

	===CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS===		===CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS===

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-	<!--
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	{{ABSTRACT_PUBMED_10600106}}		{{ABSTRACT_PUBMED_10600106}}

	==About this Structure==		==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA].	+	[[1dcr]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DCR OCA].

	==Reference==		==Reference==
-	Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution., Gao YG, Robinson H, Sanishvili R, Joachimiak A, Wang AH, Biochemistry. 1999 Dec 14;38(50):16452-60. PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~10600106 10600106]~~	+	<ref group="xtra">PMID:010600106</ref><references group="xtra"/>
	[[Category: Gao, Y G.]]		[[Category: Gao, Y G.]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]
Line 30:		Line 18:
	[[Category: Wang, A H.J.]]		[[Category: Wang, A H.J.]]
	[[Category: Deoxyribonucleic acid]]		[[Category: Deoxyribonucleic acid]]
		+	[[Category: Dna]]
	[[Category: Ga mismatch]]		[[Category: Ga mismatch]]
	[[Category: Tandem ga base pair]]		[[Category: Tandem ga base pair]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 22:50:07 2008''