1fdm - Revision history

OCA at 08:28, 22 May 2024

2024-05-22T08:28:35Z

←Older revision		Revision as of 08:28, 22 May 2024
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	</div>		</div>
	<div class="pdbe-citations 1fdm" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1fdm" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 18:35, 29 November 2023

2023-11-29T18:35:16Z

←Older revision		Revision as of 18:35, 29 November 2023
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	==FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES==		==FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES==
-	<StructureSection load='1fdm' size='340' side='right'caption='[[1fdm~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='1fdm' size='340' side='right'caption='[[1fdm]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FDM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FDM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [https://pdbe.org/1fdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [https://www.ebi.ac.uk/pdbsum/1fdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fdm ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [https://pdbe.org/1fdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [https://www.ebi.ac.uk/pdbsum/1fdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fdm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CAPSD_BPFD CAPSD_BPFD]] Self assembles to form a helical capsid wrapping up the viral genomic DNA. The capsid displays a filamentous structure with a length of 760-1950 nm and a width of 6-8 nm. The virion assembly and budding take place at the host inner membrane (By similarity).	+	[https://www.uniprot.org/uniprot/CAPSD_BPFD CAPSD_BPFD] Self assembles to form a helical capsid wrapping up the viral genomic DNA. The capsid displays a filamentous structure with a length of 760-1950 nm and a width of 6-8 nm. The virion assembly and budding take place at the host inner membrane (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 24:
	[[Category: Enterobacteria phage fd]]		[[Category: Enterobacteria phage fd]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Almeida~~, F C.L~~]]	+	[[Category: Almeida FCL]]
-	[[Category: Opella~~, S J]]~~	+	[[Category: Opella SJ]]
-	~~[[Category: Coat protein]]~~	+
-	~~[[Category: Fd coat protein]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Micelle]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 07:03, 24 March 2021

2021-03-24T07:03:32Z

←Older revision		Revision as of 07:03, 24 March 2021
Line 3:		Line 3:
	<StructureSection load='1fdm' size='340' side='right'caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1fdm' size='340' side='right'caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1FDM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FDM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [~~http~~://pdbe.org/1fdm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1fdm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1fdm ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [https://pdbe.org/1fdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [https://www.ebi.ac.uk/pdbsum/1fdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fdm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CAPSD_BPFD CAPSD_BPFD]] Self assembles to form a helical capsid wrapping up the viral genomic DNA. The capsid displays a filamentous structure with a length of 760-1950 nm and a width of 6-8 nm. The virion assembly and budding take place at the host inner membrane (By similarity).	+	[[https://www.uniprot.org/uniprot/CAPSD_BPFD CAPSD_BPFD]] Self assembles to form a helical capsid wrapping up the viral genomic DNA. The capsid displays a filamentous structure with a length of 760-1950 nm and a width of 6-8 nm. The virion assembly and budding take place at the host inner membrane (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 07:03, 19 June 2019

2019-06-19T07:03:29Z

←Older revision		Revision as of 07:03, 19 June 2019
Line 1:		Line 1:

	==FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES==		==FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES==
-	<StructureSection load='1fdm' size='340' side='right' caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='1fdm' size='340' side='right'caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage fd]]		[[Category: Enterobacteria phage fd]]
		+	[[Category: Large Structures]]
	[[Category: Almeida, F C.L]]		[[Category: Almeida, F C.L]]
	[[Category: Opella, S J]]		[[Category: Opella, S J]]

OCA at 10:54, 13 September 2017

2017-09-13T10:54:09Z

←Older revision		Revision as of 10:54, 13 September 2017
Line 1:		Line 1:
		+
	==FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES==		==FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES==
	<StructureSection load='1fdm' size='340' side='right' caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1fdm' size='340' side='right' caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bpfd Bpfd~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://pdbe.org/1fdm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://pdbe.org/1fdm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1fdm ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bpfd~~]]	+	[[Category: Enterobacteria phage fd]]
	[[Category: Almeida, F C.L]]		[[Category: Almeida, F C.L]]
	[[Category: Opella, S J]]		[[Category: Opella, S J]]

OCA at 12:05, 11 September 2015

2015-09-11T12:05:01Z

←Older revision		Revision as of 12:05, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1fdm' size='340' side='right' caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1fdm' size='340' side='right' caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_fd Enterobacteria phage fd~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpfd Bpfd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://pdbe.org/1fdm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~COATB_BPFD COATB_BPFD~~]] Self assembles to form a helical capsid wrapping up the viral genomic DNA. The capsid displays a filamentous structure with a length of 760-1950 nm and a width of 6-8 nm. The virion assembly and budding take place at the host inner membrane (By similarity).	+	[[http://www.uniprot.org/uniprot/CAPSD_BPFD CAPSD_BPFD]] Self assembles to form a helical capsid wrapping up the viral genomic DNA. The capsid displays a filamentous structure with a length of 760-1950 nm and a width of 6-8 nm. The virion assembly and budding take place at the host inner membrane (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 15:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1fdm" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Enterobacteria phage fd~~]]	+	[[Category: Bpfd]]
	[[Category: Almeida, F C.L]]		[[Category: Almeida, F C.L]]
	[[Category: Opella, S J]]		[[Category: Opella, S J]]

OCA at 16:13, 25 December 2014

2014-12-25T16:13:16Z

←Older revision		Revision as of 16:13, 25 December 2014
Line 5:		Line 5:
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/COATB_BPFD COATB_BPFD]] Self assembles to form a helical capsid wrapping up the viral genomic DNA. The capsid displays a filamentous structure with a length of 760-1950 nm and a width of 6-8 nm. The virion assembly and budding take place at the host inner membrane (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 20:21, 22 December 2014

2014-12-22T20:21:05Z

←Older revision		Revision as of 20:21, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 18:		Line 18:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage fd]]		[[Category: Enterobacteria phage fd]]
-	[[Category: Almeida, F C.L.]]	+	[[Category: Almeida, F C.L]]
-	[[Category: Opella, S J.]]	+	[[Category: Opella, S J]]
	[[Category: Coat protein]]		[[Category: Coat protein]]
	[[Category: Fd coat protein]]		[[Category: Fd coat protein]]

OCA at 10:12, 28 September 2014

2014-09-28T10:12:30Z

←Older revision		Revision as of 10:12, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1fdm.~~png\|left\|200px~~]]	+	==FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES==
		+	<StructureSection load='1fdm' size='340' side='right' caption='[[1fdm]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1fdm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1FDM FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1fdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fdm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1fdm RCSB], [http://www.ebi.ac.uk/pdbsum/1fdm PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	By performing multidimensional solution NMR experiments on micelle samples it was possible to determine the structure of the membrane-bound form of fd coat protein based on short-range distance and dihedral angle constraints using distance geometry and simulated annealing calculations. Its dynamics were described by 15N relaxation measurements (T1, T2, heteronuclear nuclear Overhauser enhancement (NOE)) fitted with the Lipari-Szabo model-free formalism adapted for the transmembrane and in-plane helices of a membrane protein. The overall correlation time of the protein in micelles was found to be approximately 9 ns, and the local motion of each backbone N-H vector was described by an order parameter and an effective correlation time. The 50 residue protein has an amphipathic alpha-helix (residues 7 to 16) and a hydrophobic alpha-helix (residues 27 to 44), which were found to be approximately perpendicular on the basis of NOEs in the residues that connect the two helices. The residues connecting the helices are of particular interest in membrane proteins, and in this case the loop consists of two turns. The relaxation data show the presence of an extra motion in the amphipathic alpha-helix on the nanosecond timescale and additional flexibility of several residues in the loop connecting the two helices.

-	~~{{STRUCTURE_1fdm\| PDB=1fdm \| SCENE= }}~~	+	fd coat protein structure in membrane environments: structural dynamics of the loop between the hydrophobic trans-membrane helix and the amphipathic in-plane helix.,Almeida FC, Opella SJ J Mol Biol. 1997 Jul 18;270(3):481-95. PMID:9237913<ref>PMID:9237913</ref>

-	~~===FD MAJOR COAT PROTEIN IN SDS MICELLES~~, ~~NMR, 20 STRUCTURES===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-		+	== References ==
-	==~~About this Structure~~==	+	<references/>
-	~~[[1fdm]] is a 1 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Enterobacteria_phage_fd Enterobacteria phage fd]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FDM OCA].~~	+	__TOC__
		+	</StructureSection>
	[[Category: Enterobacteria phage fd]]		[[Category: Enterobacteria phage fd]]
	[[Category: Almeida, F C.L.]]		[[Category: Almeida, F C.L.]]

OCA: Protected "1fdm" [edit=sysop:move=sysop]

2012-11-14T07:39:23Z

Protected "1fdm" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:39, 14 November 2012