1gn9 - Revision history

OCA at 12:00, 13 December 2023

2023-12-13T12:00:48Z

←Older revision		Revision as of 12:00, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='1gn9' size='340' side='right'caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='1gn9' size='340' side='right'caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FSO:IRON/SULFUR/OXYGEN+HYBRID+CLUSTER'>FSO</scene>~~, ~~<scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene>, <scene name='pdbligand=FSO:IRON/SULFUR/OXYGEN+HYBRID+CLUSTER'>FSO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]<~~/b></td><~~td class~~=~~"sblockDat"><div style~~=~~'overflow~~: ~~auto; max-height: 3em;~~'>~~[[1gnl\|1gnl]]~~</~~div~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [https://pdbe.org/1gn9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [https://www.ebi.ac.uk/pdbsum/1gn9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gn9 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [~~http~~://pdbe.org/1gn9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1gn9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1gn9 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/HCP_DESDA HCP_DESDA]] Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O (By similarity).[HAMAP-Rule:MF_00069]	+	[https://www.uniprot.org/uniprot/HCP_DESDA HCP_DESDA] Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O (By similarity).[HAMAP-Rule:MF_00069]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 35:
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bailey, S]]	+	[[Category: Bailey S]]
-	[[Category: Carrondo~~, M A~~]]	+	[[Category: Carrondo MA]]
-	[[Category: Coelho, R]]	+	[[Category: Coelho R]]
-	[[Category: Cooper~~, S J~~]]	+	[[Category: Cooper SJ]]
-	[[Category: Garner~~, D C~~]]	+	[[Category: Garner DC]]
-	[[Category: Hagen~~, W R~~]]	+	[[Category: Hagen WR]]
-	[[Category: Legall, J]]	+	[[Category: Legall J]]
-	[[Category: Lindley, P]]	+	[[Category: Lindley P]]
-	[[Category: Liu~~, M Y~~]]	+	[[Category: Liu MY]]
-	[[Category: Macedo, S]]	+	[[Category: Macedo S]]
-	[[Category: Mitchell~~, E P~~]]	+	[[Category: Mitchell EP]]
-	[[Category: Romao~~, C V~~]]	+	[[Category: Romao CV]]
-	[[Category: Teixeira, M]]	+	[[Category: Teixeira M]]
-	[[Category: Xavier~~, A V]]~~	+	[[Category: Xavier AV]]
-	~~[[Category: Anaerobic desulfovibrio desulfurican]]~~	+
-	~~[[Category: Hybrid cluster]]~~	+
-	~~[[Category: Hybrid cluster protein]]~~	+
-	~~[[Category: Iron anomalous~~]]	+

OCA at 10:43, 24 December 2020

2020-12-24T10:43:21Z

←Older revision		Revision as of 10:43, 24 December 2020
Line 3:		Line 3:
	<StructureSection load='1gn9' size='340' side='right'caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='1gn9' size='340' side='right'caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=FSF:4FE-2S-O+HYBRID+CLUSTER'>FSF</scene~~>, <scene name='pdbligand=FSO:IRON/SULFUR/OXYGEN+HYBRID+CLUSTER'>FSO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FSO:IRON/SULFUR/OXYGEN+HYBRID+CLUSTER'>FSO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gnl\|1gnl]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1gnl\|1gnl]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://pdbe.org/1gn9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gn9 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://pdbe.org/1gn9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gn9 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 11:33, 10 May 2019

2019-05-10T11:33:38Z

←Older revision		Revision as of 11:33, 10 May 2019
Line 1:		Line 1:

	==Hybrid Cluster Protein from Desulfovibrio desulfuricans ATCC 27774 X-ray structure at 2.6A resolution using synchrotron radiation at a wavelength of 1.722A==		==Hybrid Cluster Protein from Desulfovibrio desulfuricans ATCC 27774 X-ray structure at 2.6A resolution using synchrotron radiation at a wavelength of 1.722A==
-	<StructureSection load='1gn9' size='340' side='right' caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>	+	<StructureSection load='1gn9' size='340' side='right'caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
		+	[[Category: Large Structures]]
	[[Category: Bailey, S]]		[[Category: Bailey, S]]
	[[Category: Carrondo, M A]]		[[Category: Carrondo, M A]]

OCA at 07:59, 24 October 2018

2018-10-24T07:59:43Z

←Older revision		Revision as of 07:59, 24 October 2018
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/1gn9_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/1gn9_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 17:21, 18 January 2017

2017-01-18T17:21:28Z

←Older revision		Revision as of 17:21, 18 January 2017
Line 1:		Line 1:
		+
	==Hybrid Cluster Protein from Desulfovibrio desulfuricans ATCC 27774 X-ray structure at 2.6A resolution using synchrotron radiation at a wavelength of 1.722A==		==Hybrid Cluster Protein from Desulfovibrio desulfuricans ATCC 27774 X-ray structure at 2.6A resolution using synchrotron radiation at a wavelength of 1.722A==
	<StructureSection load='1gn9' size='340' side='right' caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='1gn9' size='340' side='right' caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gnl\|1gnl]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gnl\|1gnl]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://pdbe.org/1gn9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gn9 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gn9 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 28:		Line 29:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1gn9" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:34, 15 April 2015

2015-04-15T06:34:49Z

←Older revision		Revision as of 06:34, 15 April 2015
Line 1:		Line 1:
-	==~~HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS~~ ATCC 27774 X-~~RAY STRUCTURE AT~~ 2.6A ~~RESOLUTION USING SYNCHROTRON RADIATION AT A WAVELENGTH OF~~ 1.722A==	+	==Hybrid Cluster Protein from Desulfovibrio desulfuricans ATCC 27774 X-ray structure at 2.6A resolution using synchrotron radiation at a wavelength of 1.722A==
	<StructureSection load='1gn9' size='340' side='right' caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='1gn9' size='340' side='right' caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 34:		Line 34:
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
	[[Category: Bailey, S]]		[[Category: Bailey, S]]
-	[[Category: Carrondo, M]]	+	[[Category: Carrondo, M A]]
	[[Category: Coelho, R]]		[[Category: Coelho, R]]
-	[[Category: Cooper, S]]	+	[[Category: Cooper, S J]]
-	[[Category: Garner, C]]	+	[[Category: Garner, D C]]
-	[[Category: Hagen, W]]	+	[[Category: Hagen, W R]]
	[[Category: Legall, J]]		[[Category: Legall, J]]
	[[Category: Lindley, P]]		[[Category: Lindley, P]]
-	[[Category: Liu, M]]	+	[[Category: Liu, M Y]]
	[[Category: Macedo, S]]		[[Category: Macedo, S]]
-	[[Category: Mitchell, E]]	+	[[Category: Mitchell, E P]]
-	[[Category: Romao, C]]	+	[[Category: Romao, C V]]
	[[Category: Teixeira, M]]		[[Category: Teixeira, M]]
-	[[Category: Xavier, A]]	+	[[Category: Xavier, A V]]
	[[Category: Anaerobic desulfovibrio desulfurican]]		[[Category: Anaerobic desulfovibrio desulfurican]]
	[[Category: Hybrid cluster]]		[[Category: Hybrid cluster]]
	[[Category: Hybrid cluster protein]]		[[Category: Hybrid cluster protein]]
	[[Category: Iron anomalous]]		[[Category: Iron anomalous]]

OCA at 17:53, 25 December 2014

2014-12-25T17:53:10Z

←Older revision		Revision as of 17:53, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/HCP_DESDA HCP_DESDA]] Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O (By similarity).[HAMAP-Rule:MF_00069]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 23:03, 22 December 2014

2014-12-22T23:03:28Z

←Older revision		Revision as of 23:03, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FSF:4FE-2S-O+HYBRID+CLUSTER'>FSF</scene>, <scene name='pdbligand=FSO:IRON/SULFUR/OXYGEN+HYBRID+CLUSTER'>FSO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FSF:4FE-2S-O+HYBRID+CLUSTER'>FSF</scene>, <scene name='pdbligand=FSO:IRON/SULFUR/OXYGEN+HYBRID+CLUSTER'>FSO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gnl\|1gnl]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gnl\|1gnl]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
-	[[Category: Bailey, S.]]	+	[[Category: Bailey, S]]
-	[[Category: Carrondo, M.]]	+	[[Category: Carrondo, M]]
-	[[Category: Coelho, R.]]	+	[[Category: Coelho, R]]
-	[[Category: Cooper, S.]]	+	[[Category: Cooper, S]]
-	[[Category: Garner, C.]]	+	[[Category: Garner, C]]
-	[[Category: Hagen, W.]]	+	[[Category: Hagen, W]]
-	[[Category: Legall, J.]]	+	[[Category: Legall, J]]
-	[[Category: Lindley, P.]]	+	[[Category: Lindley, P]]
-	[[Category: Liu, M.]]	+	[[Category: Liu, M]]
-	[[Category: Macedo, S.]]	+	[[Category: Macedo, S]]
-	[[Category: Mitchell, E.]]	+	[[Category: Mitchell, E]]
-	[[Category: Romao, C.]]	+	[[Category: Romao, C]]
-	[[Category: Teixeira, M.]]	+	[[Category: Teixeira, M]]
-	[[Category: Xavier, A.]]	+	[[Category: Xavier, A]]
	[[Category: Anaerobic desulfovibrio desulfurican]]		[[Category: Anaerobic desulfovibrio desulfurican]]
	[[Category: Hybrid cluster]]		[[Category: Hybrid cluster]]
	[[Category: Hybrid cluster protein]]		[[Category: Hybrid cluster protein]]
	[[Category: Iron anomalous]]		[[Category: Iron anomalous]]

OCA at 12:47, 28 September 2014

2014-09-28T12:47:46Z

←Older revision		Revision as of 12:47, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1gn9.~~png~~\|~~left~~\|200px]]	+	==HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 X-RAY STRUCTURE AT 2.6A RESOLUTION USING SYNCHROTRON RADIATION AT A WAVELENGTH OF 1.722A==
		+	<StructureSection load='1gn9' size='340' side='right' caption='[[1gn9]], [[Resolution\|resolution]] 2.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1gn9]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GN9 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FSF:4FE-2S-O+HYBRID+CLUSTER'>FSF</scene>, <scene name='pdbligand=FSO:IRON/SULFUR/OXYGEN+HYBRID+CLUSTER'>FSO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSS:S-MERCAPTOCYSTEINE'>CSS</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gnl\|1gnl]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gn9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gn9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gn9 RCSB], [http://www.ebi.ac.uk/pdbsum/1gn9 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gn/1gn9_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structures of the hybrid cluster proteins (HCPs) from the sulfate-reducing bacteria Desulfovibrio desulfuricans (ATCC 27774) and Desulfovibrio vulgaris (Hildenborough) have been elucidated at a resolution of 1.25 A using X-ray synchrotron radiation techniques. In the case of the D. desulfuricans protein, protein isolation, purification, crystallization and X-ray data collection were carried out under strict anaerobic conditions, whereas for the D. vulgaris protein the conditions were aerobic. However, both structures are essentially the same, comprising three domains and two iron-sulfur centres. One of these centres situated near the exterior of the molecules in domain 1 is a cubane [4Fe-4S] cluster, whereas the other, located at the interface of the three domains, contains the unusual four-iron cluster initially found in the D. vulgaris protein. Details of the structures and the associated EPR spectroscopy of the D. desulfuricans protein are reported herein. These structures show that the nature of the hybrid cluster, containing both oxygen and sulfur bridges, is independent of the presence of oxygen in the isolation and crystallization procedure and also does not vary significantly with changes in the oxidation state. The structures and amino acid sequences of the HCP are compared with the recently elucidated structure of the catalytic subunit of a carbon monoxide dehydrogenase from Carboxydothermus hydrogenoformans and related dehydrogenases. Electronic supplementary material to this paper can be obtained by using the Springer Link server located at http://dx.doi.org/10.1007/s00775-001-0326-y.

-	~~{{STRUCTURE_1gn9\| PDB=1gn9 \| SCENE= }}~~	+	Hybrid cluster proteins (HCPs) from Desulfovibrio desulfuricans ATCC 27774 and Desulfovibrio vulgaris (Hildenborough): X-ray structures at 1.25 A resolution using synchrotron radiation.,Macedo S, Mitchell EP, Romao CV, Cooper SJ, Coelho R, Liu MY, Xavier AV, LeGall J, Bailey S, Garner DC, Hagen WR, Teixeira M, Carrondo MA, Lindley P J Biol Inorg Chem. 2002 Apr;7(4-5):514-25. Epub 2002 Jan 23. PMID:11941509<ref>PMID:11941509</ref>

-	~~===HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 X-RAY STRUCTURE AT 2.6A RESOLUTION USING SYNCHROTRON RADIATION AT A WAVELENGTH OF 1.722A===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11941509}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1gn9]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Desulfovibrio_desulfuricans Desulfovibrio desulfuricans]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1GN9 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:011941509<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Desulfovibrio desulfuricans]]		[[Category: Desulfovibrio desulfuricans]]
	[[Category: Bailey, S.]]		[[Category: Bailey, S.]]

OCA: Protected "1gn9" [edit=sysop:move=sysop]

2012-11-21T16:05:44Z

Protected "1gn9" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:05, 21 November 2012