1gtn - Revision history

OCA at 12:06, 13 December 2023

2023-12-13T12:06:06Z

←Older revision		Revision as of 12:06, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='1gtn' size='340' side='right'caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1gtn' size='340' side='right'caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_12980 Atcc 12980~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GTN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [https://pdbe.org/1gtn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [https://www.ebi.ac.uk/pdbsum/1gtn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gtn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [https://pdbe.org/1gtn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [https://www.ebi.ac.uk/pdbsum/1gtn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gtn ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/MTRB_GEOSE MTRB_GEOSE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 12980~~]]	+	[[Category: Geobacillus stearothermophilus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Antson~~, A A~~]]	+	[[Category: Antson AA]]
-	[[Category: Gollnick, P]]	+	[[Category: Gollnick P]]
-	[[Category: Hopcroft~~, N H~~]]	+	[[Category: Hopcroft NH]]
-	[[Category: Wendt~~, A L]]~~	+	[[Category: Wendt AL]]
-	~~[[Category: Rna binding protein-rna complex]]~~	+
-	~~[[Category: Rna-binding protein]]~~	+
-	~~[[Category: Transcription attenuation]]~~	+
-	~~[[Category: Trp rna~~]]	+

OCA at 11:28, 28 July 2021

2021-07-28T11:28:24Z

←Older revision		Revision as of 11:28, 28 July 2021
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	<StructureSection load='1gtn' size='340' side='right'caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1gtn' size='340' side='right'caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1GTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GTN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [~~http~~://pdbe.org/1gtn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1gtn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1gtn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [https://pdbe.org/1gtn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [https://www.ebi.ac.uk/pdbsum/1gtn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gtn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:36, 23 October 2019

2019-10-23T08:36:12Z

←Older revision		Revision as of 08:36, 23 October 2019
Line 1:		Line 1:

	==Structure of the trp RNA-binding attenuation protein (TRAP) bound to an RNA molecule containing 11 GAGCC repeats==		==Structure of the trp RNA-binding attenuation protein (TRAP) bound to an RNA molecule containing 11 GAGCC repeats==
-	<StructureSection load='1gtn' size='340' side='right' caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='1gtn' size='340' side='right'caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GTN FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GTN FirstGlance]. <br>
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1gtn" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1gtn" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Tryptophan RNA-binding attenuation protein\|Tryptophan RNA-binding attenuation protein]]
	== References ==		== References ==
	<references/>		<references/>
Line 32:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 12980]]		[[Category: Atcc 12980]]
		+	[[Category: Large Structures]]
	[[Category: Antson, A A]]		[[Category: Antson, A A]]
	[[Category: Gollnick, P]]		[[Category: Gollnick, P]]

OCA at 06:22, 3 January 2018

2018-01-03T06:22:42Z

←Older revision		Revision as of 06:22, 3 January 2018
Line 1:		Line 1:
-	==~~STRUCTURE OF THE TRP~~ RNA-~~BINDING ATTENUATION PROTEIN~~ (TRAP) ~~BOUND TO AN~~ RNA ~~MOLECULE CONTAINING~~ 11 GAGCC ~~REPEATS~~==	+
		+	==Structure of the trp RNA-binding attenuation protein (TRAP) bound to an RNA molecule containing 11 GAGCC repeats==
	<StructureSection load='1gtn' size='340' side='right' caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1gtn' size='340' side='right' caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [http://pdbe.org/1gtn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [http://www.ebi.ac.uk/pdbsum/1gtn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [http://pdbe.org/1gtn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [http://www.ebi.ac.uk/pdbsum/1gtn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1gtn ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gt/1gtn_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gt/1gtn_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1gtn" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1gtn" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Tryptophan RNA-binding attenuation protein\|Tryptophan RNA-binding attenuation protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 23:28, 9 February 2016

2016-02-09T23:28:56Z

←Older revision		Revision as of 23:28, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gtn ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 03:06, 11 September 2015

2015-09-11T03:06:49Z

←Older revision		Revision as of 03:06, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1gtn' size='340' side='right' caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='1gtn' size='340' side='right' caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Geobacillus_stearothermophilus Geobacillus stearothermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GTN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GTN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [http://www.ebi.ac.uk/pdbsum/1gtn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [http://pdbe.org/1gtn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [http://www.ebi.ac.uk/pdbsum/1gtn PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1gtn" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geobacillus stearothermophilus~~]]	+	[[Category: Atcc 12980]]
	[[Category: Antson, A A]]		[[Category: Antson, A A]]
	[[Category: Gollnick, P]]		[[Category: Gollnick, P]]

OCA at 23:30, 22 December 2014

2014-12-22T23:30:07Z

←Older revision		Revision as of 23:30, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GTN FirstGlance]. <br>		<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GTN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [http://www.ebi.ac.uk/pdbsum/1gtn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [http://www.ebi.ac.uk/pdbsum/1gtn PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Geobacillus stearothermophilus]]		[[Category: Geobacillus stearothermophilus]]
-	[[Category: Antson, A A.]]	+	[[Category: Antson, A A]]
-	[[Category: Gollnick, P.]]	+	[[Category: Gollnick, P]]
-	[[Category: Hopcroft, N H.]]	+	[[Category: Hopcroft, N H]]
-	[[Category: Wendt, A L.]]	+	[[Category: Wendt, A L]]
	[[Category: Rna binding protein-rna complex]]		[[Category: Rna binding protein-rna complex]]
	[[Category: Rna-binding protein]]		[[Category: Rna-binding protein]]
	[[Category: Transcription attenuation]]		[[Category: Transcription attenuation]]
	[[Category: Trp rna]]		[[Category: Trp rna]]

OCA at 11:07, 3 October 2014

2014-10-03T11:07:50Z

←Older revision		Revision as of 11:07, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1gtn\| PDB=1gtn \| SCENE= }}~~	+	==STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO AN RNA MOLECULE CONTAINING 11 GAGCC REPEATS==
-	===STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO AN RNA MOLECULE CONTAINING 11 GAGCC REPEATS===	+	<StructureSection load='1gtn' size='340' side='right' caption='[[1gtn]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~{{ABSTRACT_PUBMED_11914485}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1gtn]] is a 23 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GTN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1GTN FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRP:TRYPTOPHAN'>TRP</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1c9s\|1c9s]], [[1gtf\|1gtf]], [[1qaw\|1qaw]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1gtn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gtn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1gtn RCSB], [http://www.ebi.ac.uk/pdbsum/1gtn PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gt/1gtn_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The trp RNA-binding attenuation protein (TRAP) regulates expression of the tryptophan biosynthetic genes in bacilli by binding to the leader region of the nascent trp operon mRNA. When activated by binding tryptophan, the 11-subunit circular TRAP molecule binds to a target sequence consisting of 11 (G/U)AG repeats, separated by two or three variable 'spacer' nucleotides. Reported here are two crystal structures of TRAP bound to RNAs containing 11 GAG repeats separated by UU and CC spacer nucleotides, determined at 1.75 and 2.50 A resolution, respectively. These show the spacer regions of the RNA molecules to be highly flexible, making no direct hydrogen-bonding contacts with the protein. Comparison of these structures with the previous structure of TRAP bound to (GAGAU)(10)GAG RNA, in which the spacer nucleotides stack with each other close to the protein surface, shows that the RNA can adopt different conformations depending on the sequence of the spacer regions. This gives insight into the structural basis of the specificity of TRAP and into the mechanism of binding.

-	~~==About this Structure==~~	+	Specificity of TRAP-RNA interactions: crystal structures of two complexes with different RNA sequences.,Hopcroft NH, Wendt AL, Gollnick P, Antson AA Acta Crystallogr D Biol Crystallogr. 2002 Apr;58(Pt 4):615-21. Epub 2002, Mar 22. PMID:11914485<ref>PMID:11914485</ref>
-	~~[[1gtn]] is a 23 chain structure~~ with ~~sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http~~:~~//oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=1GTN OCA].~~	+

-	==~~Reference~~==	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~<ref group~~=~~"xtra">PMID:011914485</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	</div>
		+
		+	==See Also==
		+	*[[Tryptophan RNA-binding attenuation protein\|Tryptophan RNA-binding attenuation protein]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Geobacillus stearothermophilus]]		[[Category: Geobacillus stearothermophilus]]
	[[Category: Antson, A A.]]		[[Category: Antson, A A.]]

OCA at 10:47, 16 April 2014

2014-04-16T10:47:16Z

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-	[[Image:1gtn.png\|left\|200px]]
-
-	<!--
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	{{STRUCTURE_1gtn\| PDB=1gtn \| SCENE= }}		{{STRUCTURE_1gtn\| PDB=1gtn \| SCENE= }}
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	===STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO AN RNA MOLECULE CONTAINING 11 GAGCC REPEATS===		===STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO AN RNA MOLECULE CONTAINING 11 GAGCC REPEATS===
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	==Reference==		==Reference==
-	<ref group="xtra">PMID:011914485</ref><~~ref~~ group="xtra"~~>PMID:010499579<~~/~~ref~~><references ~~group="xtra"~~/>	+	<ref group="xtra">PMID:011914485</ref><references group="xtra"/><references/>
	[[Category: Geobacillus stearothermophilus]]		[[Category: Geobacillus stearothermophilus]]
	[[Category: Antson, A A.]]		[[Category: Antson, A A.]]

OCA at 05:17, 24 August 2011

2011-08-24T05:17:55Z

←Older revision		Revision as of 05:17, 24 August 2011
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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11914485~~</ref><ref group="xtra">PMID:~~10499579~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011914485</ref><ref group="xtra">PMID:010499579</ref><references group="xtra"/>
	[[Category: Geobacillus stearothermophilus]]		[[Category: Geobacillus stearothermophilus]]
	[[Category: Antson, A A.]]		[[Category: Antson, A A.]]
Line 28:		Line 28:
	[[Category: Hopcroft, N H.]]		[[Category: Hopcroft, N H.]]
	[[Category: Wendt, A L.]]		[[Category: Wendt, A L.]]
-	[[Category: Rna binding protein/rna]]	+	[[Category: Rna binding protein-rna complex]]
	[[Category: Rna-binding protein]]		[[Category: Rna-binding protein]]
	[[Category: Transcription attenuation]]		[[Category: Transcription attenuation]]
	[[Category: Trp rna]]		[[Category: Trp rna]]