1hfj - Revision history

OCA at 11:31, 27 March 2024

2024-03-27T11:31:16Z

←Older revision		Revision as of 11:31, 27 March 2024
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	<StructureSection load='1hfj' size='340' side='right'caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1hfj' size='340' side='right'caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Erwinia_chrysanthemi Erwinia~~ chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Dickeya_chrysanthemi Dickeya chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[3pga\|3pga]], [[1hfk\|1hfk]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [https://pdbe.org/1hfj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [https://www.ebi.ac.uk/pdbsum/1hfj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hfj ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [https://pdbe.org/1hfj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [https://www.ebi.ac.uk/pdbsum/1hfj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hfj ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/ASPG_DICCH ASPG_DICCH]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hfj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hfj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Quasi-enantiomorphic crystals of the Y25F mutant of Escherichia coli L-asparaginase and of the native Erwinia chrysanthemi L-asparaginase were obtained in the hexagonal space groups P6(5)22 and P6(1)22, respectively. The structures of these highly homologous enzymes were solved by molecular replacement and were refined with data extending to 2.2-2.5 A. These structures were compared with each other, as well as with other L-asparaginase structures previously observed with different crystal packing. It is concluded that the observed phenomenon, which is rare, was most likely to have arisen by chance.
-
-	Structures of two highly homologous bacterial L-asparaginases: a case of enantiomorphic space groups.,Jaskolski M, Kozak M, Lubkowski J, Palm G, Wlodawer A Acta Crystallogr D Biol Crystallogr. 2001 Mar;57(Pt 3):369-77. PMID:11223513<ref>PMID:11223513</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1hfj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Asparaginase 3D structures\|Asparaginase 3D structures]]		*[[Asparaginase 3D structures\|Asparaginase 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Asparaginase]]~~	+	[[Category: Dickeya chrysanthemi]]
-	~~[[Category: Erwinia~~ chrysanthemi]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Jaskolski, M]]	+	[[Category: Jaskolski M]]
-	[[Category: Kozak, M]]	+	[[Category: Kozak M]]
-	[[Category: Lubkowski, J]]	+	[[Category: Lubkowski J]]
-	[[Category: Palm~~, G J~~]]	+	[[Category: Palm GJ]]
-	[[Category: Wlodawer, A]]	+	[[Category: Wlodawer A]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 10:25, 17 February 2021

2021-02-17T10:25:52Z

←Older revision		Revision as of 10:25, 17 February 2021
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	<StructureSection load='1hfj' size='340' side='right'caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1hfj' size='340' side='right'caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3pga\|3pga]], [[1hfk\|1hfk]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3pga\|3pga]], [[1hfk\|1hfk]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [~~http~~://pdbe.org/1hfj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1hfj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1hfj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [https://pdbe.org/1hfj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [https://www.ebi.ac.uk/pdbsum/1hfj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hfj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 11:37, 10 May 2019

2019-05-10T11:37:56Z

←Older revision		Revision as of 11:37, 10 May 2019
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	==Asparaginase from Erwinia chrysanthemi, hexagonal form with sulfate==		==Asparaginase from Erwinia chrysanthemi, hexagonal form with sulfate==
-	<StructureSection load='1hfj' size='340' side='right' caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='1hfj' size='340' side='right'caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1hfj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1hfj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Asparaginase 3D structures\|Asparaginase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 37:
	[[Category: Asparaginase]]		[[Category: Asparaginase]]
	[[Category: Erwinia chrysanthemi]]		[[Category: Erwinia chrysanthemi]]
		+	[[Category: Large Structures]]
	[[Category: Jaskolski, M]]		[[Category: Jaskolski, M]]
	[[Category: Kozak, M]]		[[Category: Kozak, M]]

OCA at 09:25, 10 January 2018

2018-01-10T09:25:07Z

←Older revision		Revision as of 09:25, 10 January 2018
Line 1:		Line 1:
-	==~~ASPARAGINASE FROM ERWINIA CHRYSANTHEMI~~, ~~HEXAGONAL FORM WITH SULFATE~~==	+
		+	==Asparaginase from Erwinia chrysanthemi, hexagonal form with sulfate==
	<StructureSection load='1hfj' size='340' side='right' caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1hfj' size='340' side='right' caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Dickeya_chrysanthemi Dickeya~~ chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3pga\|3pga]], [[1hfk\|1hfk]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3pga\|3pga]], [[1hfk\|1hfk]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [http://pdbe.org/1hfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [http://www.ebi.ac.uk/pdbsum/1hfj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [http://pdbe.org/1hfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [http://www.ebi.ac.uk/pdbsum/1hfj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1hfj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/1hfj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/1hfj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 27:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1hfj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1hfj" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Asparaginase\|Asparaginase]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Asparaginase]]		[[Category: Asparaginase]]
-	[[Category: ~~Dickeya~~ chrysanthemi]]	+	[[Category: Erwinia chrysanthemi]]
	[[Category: Jaskolski, M]]		[[Category: Jaskolski, M]]
	[[Category: Kozak, M]]		[[Category: Kozak, M]]

OCA at 08:35, 10 February 2016

2016-02-10T08:35:31Z

←Older revision		Revision as of 08:35, 10 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hfj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:08, 11 September 2015

2015-09-11T07:08:54Z

←Older revision		Revision as of 07:08, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1hfj' size='340' side='right' caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1hfj' size='340' side='right' caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Erwinia_chrysanthemi Erwinia~~ chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Dickeya_chrysanthemi Dickeya chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3pga\|3pga]], [[1hfk\|1hfk]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3pga\|3pga]], [[1hfk\|1hfk]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [http://www.ebi.ac.uk/pdbsum/1hfj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [http://pdbe.org/1hfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [http://www.ebi.ac.uk/pdbsum/1hfj PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1hfj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Asparaginase]]		[[Category: Asparaginase]]
-	[[Category: ~~Erwinia~~ chrysanthemi]]	+	[[Category: Dickeya chrysanthemi]]
	[[Category: Jaskolski, M]]		[[Category: Jaskolski, M]]
	[[Category: Kozak, M]]		[[Category: Kozak, M]]

OCA at 21:30, 22 December 2014

2014-12-22T21:30:22Z

←Older revision		Revision as of 21:30, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3pga\|3pga]], [[1hfk\|1hfk]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3pga\|3pga]], [[1hfk\|1hfk]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [http://www.ebi.ac.uk/pdbsum/1hfj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [http://www.ebi.ac.uk/pdbsum/1hfj PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Asparaginase]]		[[Category: Asparaginase]]
	[[Category: Erwinia chrysanthemi]]		[[Category: Erwinia chrysanthemi]]
-	[[Category: Jaskolski, M.]]	+	[[Category: Jaskolski, M]]
-	[[Category: Kozak, M.]]	+	[[Category: Kozak, M]]
-	[[Category: Lubkowski, J.]]	+	[[Category: Lubkowski, J]]
-	[[Category: Palm, G J.]]	+	[[Category: Palm, G J]]
-	[[Category: Wlodawer, A.]]	+	[[Category: Wlodawer, A]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 10:02, 3 October 2014

2014-10-03T10:02:19Z

←Older revision		Revision as of 10:02, 3 October 2014
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-	~~{{STRUCTURE_1hfj\| PDB=1hfj \| SCENE= }}~~	+	==ASPARAGINASE FROM ERWINIA CHRYSANTHEMI, HEXAGONAL FORM WITH SULFATE==
-	===ASPARAGINASE FROM ERWINIA CHRYSANTHEMI, HEXAGONAL FORM WITH SULFATE===	+	<StructureSection load='1hfj' size='340' side='right' caption='[[1hfj]], [[Resolution\|resolution]] 2.40Å' scene=''>
-	~~{{ABSTRACT_PUBMED_11223513}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HFJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3pga\|3pga]], [[1hfk\|1hfk]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hfj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hfj RCSB], [http://www.ebi.ac.uk/pdbsum/1hfj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hf/1hfj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Quasi-enantiomorphic crystals of the Y25F mutant of Escherichia coli L-asparaginase and of the native Erwinia chrysanthemi L-asparaginase were obtained in the hexagonal space groups P6(5)22 and P6(1)22, respectively. The structures of these highly homologous enzymes were solved by molecular replacement and were refined with data extending to 2.2-2.5 A. These structures were compared with each other, as well as with other L-asparaginase structures previously observed with different crystal packing. It is concluded that the observed phenomenon, which is rare, was most likely to have arisen by chance.

-	~~==About this Structure==~~	+	Structures of two highly homologous bacterial L-asparaginases: a case of enantiomorphic space groups.,Jaskolski M, Kozak M, Lubkowski J, Palm G, Wlodawer A Acta Crystallogr D Biol Crystallogr. 2001 Mar;57(Pt 3):369-77. PMID:11223513<ref>PMID:11223513</ref>
-	~~[[1hfj]] is a 2 chain structure with sequence from [http~~:~~//en~~.~~wikipedia~~.~~org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=1HFJ OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Asparaginase\|Asparaginase]]		*[[Asparaginase\|Asparaginase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:011223513</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Asparaginase]]		[[Category: Asparaginase]]
	[[Category: Erwinia chrysanthemi]]		[[Category: Erwinia chrysanthemi]]

OCA at 10:45, 16 April 2014

2014-04-16T10:45:11Z

←Older revision		Revision as of 10:45, 16 April 2014
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-	[[Image:1hfj.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1hfj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1hfj\| PDB=1hfj \| SCENE= }}		{{STRUCTURE_1hfj\| PDB=1hfj \| SCENE= }}
-
	===ASPARAGINASE FROM ERWINIA CHRYSANTHEMI, HEXAGONAL FORM WITH SULFATE===		===ASPARAGINASE FROM ERWINIA CHRYSANTHEMI, HEXAGONAL FORM WITH SULFATE===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11223513}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11223513 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11223513}}		{{ABSTRACT_PUBMED_11223513}}

	==About this Structure==		==About this Structure==
	[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA].		[[1hfj]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_chrysanthemi Erwinia chrysanthemi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HFJ OCA].
		+
		+	==See Also==
		+	*[[Asparaginase\|Asparaginase]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:011223513</ref><~~ref~~ group="xtra"~~>PMID:008434007<~~/~~ref><ref group="xtra">PMID:008348975</ref~~><references ~~group="xtra"~~/>	+	<ref group="xtra">PMID:011223513</ref><references group="xtra"/><references/>
	[[Category: Asparaginase]]		[[Category: Asparaginase]]
	[[Category: Erwinia chrysanthemi]]		[[Category: Erwinia chrysanthemi]]

OCA at 07:41, 30 October 2011

2011-10-30T07:41:03Z

←Older revision		Revision as of 07:41, 30 October 2011
Line 22:		Line 22:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11223513~~</ref><ref group="xtra">PMID:~~8434007~~</ref><ref group="xtra">PMID:~~8348975~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011223513</ref><ref group="xtra">PMID:008434007</ref><ref group="xtra">PMID:008348975</ref><references group="xtra"/>
	[[Category: Asparaginase]]		[[Category: Asparaginase]]
	[[Category: Erwinia chrysanthemi]]		[[Category: Erwinia chrysanthemi]]
Line 30:		Line 30:
	[[Category: Palm, G J.]]		[[Category: Palm, G J.]]
	[[Category: Wlodawer, A.]]		[[Category: Wlodawer, A.]]
-	[[Category: Amidohydrolase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]