1hz5 - Revision history

OCA at 06:18, 9 August 2023

2023-08-09T06:18:09Z

←Older revision		Revision as of 06:18, 9 August 2023
Line 3:		Line 3:
	<StructureSection load='1hz5' size='340' side='right'caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1hz5' size='340' side='right'caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Finm2 Finm2~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Finegoldia_magna_ATCC_29328 Finegoldia magna ATCC 29328]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1hz6\|1hz6]], [[2ptl\|2ptl]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [https://pdbe.org/1hz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [https://www.ebi.ac.uk/pdbsum/1hz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hz5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [https://pdbe.org/1hz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [https://www.ebi.ac.uk/pdbsum/1hz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hz5 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q51912_FINMA Q51912_FINMA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Finm2~~]]	+	[[Category: Finegoldia magna ATCC 29328]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Baker, D]]	+	[[Category: Baker D]]
-	[[Category: Kim~~, D E~~]]	+	[[Category: Kim DE]]
-	[[Category: Neill~~, J W.O~~]]	+	[[Category: O'Neill JW]]
-	[[Category: Zhang~~, K Y.J]]~~	+	[[Category: Zhang KYJ]]
-	~~[[Category: Binds kappa light chain of immunoglobulin]]~~	+
-	~~[[Category: Four stranded beta-sheet with central alpha helix]]~~	+
-	~~[[Category: Protein binding]]~~	+
-	~~[[Category: Zinc coordinated histag~~]]	+

OCA at 10:55, 4 August 2021

2021-08-04T10:55:08Z

←Older revision		Revision as of 10:55, 4 August 2021
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	<StructureSection load='1hz5' size='340' side='right'caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1hz5' size='340' side='right'caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Finm2 Finm2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Finm2 Finm2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1hz6\|1hz6]], [[2ptl\|2ptl]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1hz6\|1hz6]], [[2ptl\|2ptl]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [~~http~~://pdbe.org/1hz5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1hz5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1hz5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [https://pdbe.org/1hz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [https://www.ebi.ac.uk/pdbsum/1hz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hz5 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 10:34, 30 October 2019

2019-10-30T10:34:16Z

←Older revision		Revision as of 10:34, 30 October 2019
Line 1:		Line 1:

	==CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION==		==CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION==
-	<StructureSection load='1hz5' size='340' side='right' caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1hz5' size='340' side='right'caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Finm2 Finm2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Finm2 Finm2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Finm2]]		[[Category: Finm2]]
		+	[[Category: Large Structures]]
	[[Category: Baker, D]]		[[Category: Baker, D]]
	[[Category: Kim, D E]]		[[Category: Kim, D E]]

OCA at 09:34, 10 January 2018

2018-01-10T09:34:34Z

←Older revision		Revision as of 09:34, 10 January 2018
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION==		==CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION==
	<StructureSection load='1hz5' size='340' side='right' caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1hz5' size='340' side='right' caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1hz6\|1hz6]], [[2ptl\|2ptl]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1hz6\|1hz6]], [[2ptl\|2ptl]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [http://pdbe.org/1hz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1hz5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [http://pdbe.org/1hz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1hz5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1hz5 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hz/1hz5_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hz/1hz5_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 21:19, 9 February 2016

2016-02-09T21:19:21Z

←Older revision		Revision as of 21:19, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hz5 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:08, 11 September 2015

2015-09-11T02:08:11Z

←Older revision		Revision as of 02:08, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1hz5' size='340' side='right' caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1hz5' size='340' side='right' caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Finegoldia_magna_atcc_29328 Finegoldia magna atcc 29328~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Finm2 Finm2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1hz6\|1hz6]], [[2ptl\|2ptl]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1hz6\|1hz6]], [[2ptl\|2ptl]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1hz5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [http://pdbe.org/1hz5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1hz5 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1hz5" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Finegoldia magna atcc 29328~~]]	+	[[Category: Finm2]]
	[[Category: Baker, D]]		[[Category: Baker, D]]
	[[Category: Kim, D E]]		[[Category: Kim, D E]]

OCA at 09:50, 2 January 2015

2015-01-02T09:50:32Z

←Older revision		Revision as of 09:50, 2 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Finegoldia_magna_atcc_29328 Finegoldia magna atcc 29328]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Finegoldia_magna_atcc_29328 Finegoldia magna atcc 29328]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1hz6\|1hz6]], [[2ptl\|2ptl]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1hz6\|1hz6]], [[2ptl\|2ptl]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1hz5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1hz5 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Finegoldia magna atcc 29328]]		[[Category: Finegoldia magna atcc 29328]]
-	[[Category: Baker, D.]]	+	[[Category: Baker, D]]
-	[[Category: Kim, D E.]]	+	[[Category: Kim, D E]]
-	[[Category: Neill, J W.O.]]	+	[[Category: Neill, J W.O]]
-	[[Category: Zhang, K Y.J.]]	+	[[Category: Zhang, K Y.J]]
	[[Category: Binds kappa light chain of immunoglobulin]]		[[Category: Binds kappa light chain of immunoglobulin]]
	[[Category: Four stranded beta-sheet with central alpha helix]]		[[Category: Four stranded beta-sheet with central alpha helix]]
	[[Category: Protein binding]]		[[Category: Protein binding]]
	[[Category: Zinc coordinated histag]]		[[Category: Zinc coordinated histag]]

OCA at 12:18, 28 September 2014

2014-09-28T12:18:18Z

←Older revision		Revision as of 12:18, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1hz5.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION==
		+	<StructureSection load='1hz5' size='340' side='right' caption='[[1hz5]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1hz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Finegoldia_magna_atcc_29328 Finegoldia magna atcc 29328]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1HZ5 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1hz6\|1hz6]], [[2ptl\|2ptl]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1hz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1hz5 RCSB], [http://www.ebi.ac.uk/pdbsum/1hz5 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hz/1hz5_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The three-dimensional structure of a tryptophan-containing variant of the IgG-binding B1 domain of protein L has been solved in two crystal forms to 1.7 and 1.8 A resolution. In one of the crystal forms, the entire N-terminal histidine-tag region was immobilized through the coordination of zinc ions and its structural conformation along with the zinc coordination scheme were determined. However, the ordering of the histidine tag by zinc does not affect the overall structure of the rest of the protein. Structural comparisons of the tryptophan-containing variant with an NMR-derived wild-type structure, which contains a tyrosine at position 47, reveals a common fold, although the overall backbone root-mean-square difference is 1.5 A. The Y47W substitution only caused local rearrangement of several side chains, the most prominent of which is the rotation of the Tyr34 side chain, resulting in a 6 A displacement of its hydroxyl group. A small methyl-sized cavity bounded by beta-strands 1, 2 and 4 and the alpha-helix was found in the structures of the Y47W-substituted protein L B1 domain. This cavity may be created as the result of subsequent side-chain rearrangements caused by the Y47W substitution. These high-resolution structures of the tryptophan-containing variant provide a reference frame for the analysis of thermodynamic and kinetic data derived from a series of mutational studies of the protein L B1 domain.

-	~~{{STRUCTURE_1hz5\| PDB=1hz5 \| SCENE= }}~~	+	Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution.,O'Neill JW, Kim DE, Baker D, Zhang KY Acta Crystallogr D Biol Crystallogr. 2001 Apr;57(Pt 4):480-7. PMID:11264576<ref>PMID:11264576</ref>

-	~~===CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS~~, ~~WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11264576}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1hz5]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Finegoldia_magna_atcc_29328 Finegoldia magna atcc 29328]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:011264576<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Finegoldia magna atcc 29328]]		[[Category: Finegoldia magna atcc 29328]]
	[[Category: Baker, D.]]		[[Category: Baker, D.]]

OCA: Protected "1hz5" [edit=sysop:move=sysop]

2012-11-21T16:22:37Z

Protected "1hz5" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:22, 21 November 2012

OCA at 16:22, 21 November 2012

2012-11-21T16:22:35Z

←Older revision		Revision as of 16:22, 21 November 2012
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-	{{Seed}}
	[[Image:1hz5.png\|left\|200px]]		[[Image:1hz5.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1hz5\| PDB=1hz5 \| SCENE= }}		{{STRUCTURE_1hz5\| PDB=1hz5 \| SCENE= }}

	===CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION===		===CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS, WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11264576}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11264576 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11264576}}		{{ABSTRACT_PUBMED_11264576}}

	==About this Structure==		==About this Structure==
-	~~1HZ5~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Finegoldia_magna~~ Finegoldia magna]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA].	+	[[1hz5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Finegoldia_magna_atcc_29328 Finegoldia magna atcc 29328]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ5 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11264576~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011264576</ref><references group="xtra"/>
-	[[Category: Finegoldia magna]]	+	[[Category: Finegoldia magna atcc 29328]]
	[[Category: Baker, D.]]		[[Category: Baker, D.]]
	[[Category: Kim, D E.]]		[[Category: Kim, D E.]]
Line 31:		Line 19:
	[[Category: Binds kappa light chain of immunoglobulin]]		[[Category: Binds kappa light chain of immunoglobulin]]
	[[Category: Four stranded beta-sheet with central alpha helix]]		[[Category: Four stranded beta-sheet with central alpha helix]]
		+	[[Category: Protein binding]]
	[[Category: Zinc coordinated histag]]		[[Category: Zinc coordinated histag]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:49:49 2009''