1j1h - Revision history

OCA at 23:40, 27 December 2023

2023-12-27T23:40:34Z

←Older revision		Revision as of 23:40, 27 December 2023
Line 1:		Line 1:

	==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus==		==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus==
-	<StructureSection load='1j1h' size='340' side='right'caption='[[1j1h~~]], [[NMR_Ensembles_of_Models \| 11 NMR models~~]]' scene=''>	+	<StructureSection load='1j1h' size='340' side='right'caption='[[1j1h]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J1H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J1H FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [https://pdbe.org/1j1h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [https://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1h ProSAT], [https://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [https://pdbe.org/1j1h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [https://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1h ProSAT], [https://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/SSRP_THET8 SSRP_THET8]] Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes (By similarity).	+	[https://www.uniprot.org/uniprot/SSRP_THET8 SSRP_THET8] Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fujii, M]]	+	[[Category: Thermus thermophilus]]
-	[[Category: Hatanaka, H]]	+	[[Category: Fujii M]]
-	[[Category: Hosoi, H]]	+	[[Category: Hatanaka H]]
-	[[Category: Inoue, Y]]	+	[[Category: Hosoi H]]
-	[[Category: Kawai, G]]	+	[[Category: Inoue Y]]
-	[[Category: Kuramitsu, S]]	+	[[Category: Kawai G]]
-	[[Category: Nameki, N]]	+	[[Category: Kuramitsu S]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Nameki N]]
-	[[Category: Shibata, T]]	+	[[Category: Shibata T]]
-	[[Category: Shirouzu, M]]	+	[[Category: Shirouzu M]]
-	[[Category: Someya, T]]	+	[[Category: Someya T]]
-	[[Category: Suzuki, S]]	+	[[Category: Suzuki S]]
-	[[Category: Terada, T]]	+	[[Category: Terada T]]
-	[[Category: Yokoyama, S]]	+	[[Category: Yokoyama S]]
-	~~[[Category: Ob fold]]~~	+
-	~~[[Category: Rna binding protein]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Smpb]]~~	+
-	~~[[Category: Ssra associated protein~~]]	+

OCA at 11:09, 4 August 2021

2021-08-04T11:09:15Z

←Older revision		Revision as of 11:09, 4 August 2021
Line 3:		Line 3:
	<StructureSection load='1j1h' size='340' side='right'caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='1j1h' size='340' side='right'caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1J1H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1J1H FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [~~http~~://pdbe.org/1j1h PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1h ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [https://pdbe.org/1j1h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [https://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1h ProSAT], [https://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/SSRP_THET8 SSRP_THET8]] Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes (By similarity).	+	[[https://www.uniprot.org/uniprot/SSRP_THET8 SSRP_THET8]] Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 10:05, 30 October 2019

2019-10-30T10:05:01Z

←Older revision		Revision as of 10:05, 30 October 2019
Line 1:		Line 1:

	==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus==		==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus==
-	<StructureSection load='1j1h' size='340' side='right' caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>	+	<StructureSection load='1j1h' size='340' side='right'caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>		<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
		+	[[Category: Large Structures]]
	[[Category: Fujii, M]]		[[Category: Fujii, M]]
	[[Category: Hatanaka, H]]		[[Category: Hatanaka, H]]

OCA at 08:51, 17 January 2018

2018-01-17T08:51:16Z

←Older revision		Revision as of 08:51, 17 January 2018
Line 1:		Line 1:
		+
	==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus==		==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus==
	<StructureSection load='1j1h' size='340' side='right' caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='1j1h' size='340' side='right' caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>		<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [http://pdbe.org/1j1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [http://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [http://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [http://pdbe.org/1j1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [http://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1j1h ProSAT], [http://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1h_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1h_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 16:27, 8 February 2016

2016-02-08T16:27:51Z

←Older revision		Revision as of 16:27, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j1h ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 13:23, 10 September 2015

2015-09-10T13:23:22Z

←Older revision		Revision as of 13:23, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1j1h' size='340' side='right' caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='1j1h' size='340' side='right' caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [http://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [http://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [http://pdbe.org/1j1h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [http://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [http://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1j1h" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermus thermophilus~~]]	+	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Fujii, M]]		[[Category: Fujii, M]]
	[[Category: Hatanaka, H]]		[[Category: Hatanaka, H]]

OCA at 00:38, 25 December 2014

2014-12-25T00:38:29Z

←Older revision		Revision as of 00:38, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>		<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [http://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [http://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [http://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [http://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SSRP_THET8 SSRP_THET8]] Binds specifically to the SsrA RNA (tmRNA) and is required for stable association of SsrA with ribosomes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Fujii, M.]]	+	[[Category: Fujii, M]]
-	[[Category: Hatanaka, H.]]	+	[[Category: Hatanaka, H]]
-	[[Category: Hosoi, H.]]	+	[[Category: Hosoi, H]]
-	[[Category: Inoue, Y.]]	+	[[Category: Inoue, Y]]
-	[[Category: Kawai, G.]]	+	[[Category: Kawai, G]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: Nameki, N.]]	+	[[Category: Nameki, N]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Shibata, T.]]	+	[[Category: Shibata, T]]
-	[[Category: Shirouzu, M.]]	+	[[Category: Shirouzu, M]]
-	[[Category: Someya, T.]]	+	[[Category: Someya, T]]
-	[[Category: Suzuki, S.]]	+	[[Category: Suzuki, S]]
-	[[Category: Terada, T.]]	+	[[Category: Terada, T]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Ob fold]]		[[Category: Ob fold]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rna binding protein]]		[[Category: Rna binding protein]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Smpb]]		[[Category: Smpb]]
	[[Category: Ssra associated protein]]		[[Category: Ssra associated protein]]
-	[[Category: Structural genomic]]

OCA at 11:49, 28 September 2014

2014-09-28T11:49:18Z

←Older revision		Revision as of 11:49, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1j1h.~~png\|left~~\|200px]]	+	==Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus==
		+	<StructureSection load='1j1h' size='340' side='right' caption='[[1j1h]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J1H FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j1h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j1h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j1h RCSB], [http://www.ebi.ac.uk/pdbsum/1j1h PDBsum], [http://www.topsan.org/Proteins/RSGI/1j1h TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j1/1j1h_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Small protein B (SmpB) is required for trans-translation, binding specifically to tmRNA. We show here the solution structure of SmpB from an extremely thermophilic bacterium, Thermus thermophilus HB8, determined by heteronuclear nuclear magnetic resonance methods. The core of the protein consists of an antiparallel beta-barrel twisted up from eight beta-strands, each end of which is capped with the second or third helix, and the first helix is located beside the barrel. Its C-terminal sequence (20 residues), which is rich in basic residues, shows a poorly structured form, as often seen in isolated ribosomal proteins. The results are discussed in relation to the oligonucleotide binding fold.

-	~~{{STRUCTURE_1j1h\| PDB=1j1h \| SCENE= }}~~	+	Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus.,Someya T, Nameki N, Hosoi H, Suzuki S, Hatanaka H, Fujii M, Terada T, Shirouzu M, Inoue Y, Shibata T, Kuramitsu S, Yokoyama S, Kawai G FEBS Lett. 2003 Jan 30;535(1-3):94-100. PMID:12560085<ref>PMID:12560085</ref>

-	~~===Solution structure of a tmRNA-binding protein~~, ~~SmpB, from Thermus thermophilus===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12560085}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1j1h]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thermus_thermophilus Thermus thermophilus]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:012560085<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Fujii, M.]]		[[Category: Fujii, M.]]

OCA: Protected "1j1h" [edit=sysop:move=sysop]

2012-11-28T15:07:07Z

Protected "1j1h" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:07, 28 November 2012

OCA at 15:07, 28 November 2012

2012-11-28T15:07:02Z

←Older revision		Revision as of 15:07, 28 November 2012
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-	{{Seed}}
	[[Image:1j1h.png\|left\|200px]]		[[Image:1j1h.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1j1h\| PDB=1j1h \| SCENE= }}		{{STRUCTURE_1j1h\| PDB=1j1h \| SCENE= }}

	===Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus===		===Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12560085}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 12560085 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_12560085}}		{{ABSTRACT_PUBMED_12560085}}

	==About this Structure==		==About this Structure==
-	~~1J1H~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA].	+	[[1j1h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J1H OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12560085~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012560085</ref><references group="xtra"/>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Fujii, M.]]		[[Category: Fujii, M.]]
Line 41:		Line 29:
	[[Category: Ob fold]]		[[Category: Ob fold]]
	[[Category: Riken structural genomics/proteomics initiative]]		[[Category: Riken structural genomics/proteomics initiative]]
		+	[[Category: Rna binding protein]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Smpb]]		[[Category: Smpb]]
	[[Category: Ssra associated protein]]		[[Category: Ssra associated protein]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 00:26:25 2009''