1j3f - Revision history

OCA at 17:53, 8 February 2016

2016-02-08T17:53:55Z

←Older revision		Revision as of 17:53, 8 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1j3f ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:00, 10 September 2015

2015-09-10T14:00:14Z

←Older revision		Revision as of 14:00, 10 September 2015
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	<StructureSection load='1j3f' size='340' side='right' caption='[[1j3f]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='1j3f' size='340' side='right' caption='[[1j3f]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1j3f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Physeter_catodon Physeter catodon~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J3F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1j3f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Phycd Phycd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J3F FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR:CHROMIUM+ION'>CR</scene>, <scene name='pdbligand=CZM:N,N-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE'>CZM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR:CHROMIUM+ION'>CR</scene>, <scene name='pdbligand=CZM:N,N-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE'>CZM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j3f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j3f RCSB], [http://www.ebi.ac.uk/pdbsum/1j3f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j3f OCA], [http://pdbe.org/1j3f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1j3f RCSB], [http://www.ebi.ac.uk/pdbsum/1j3f PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1j3f" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Physeter catodon~~]]	+	[[Category: Phycd]]
	[[Category: Kono, M]]		[[Category: Kono, M]]
	[[Category: Koshiyama, T]]		[[Category: Koshiyama, T]]

OCA at 01:07, 25 December 2014

2014-12-25T01:07:06Z

←Older revision		Revision as of 01:07, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1j3f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J3F FirstGlance]. <br>		<table><tr><td colspan='2'>[[1j3f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J3F FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR:CHROMIUM+ION'>CR</scene>, <scene name='pdbligand=CZM:N,N-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE'>CZM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR:CHROMIUM+ION'>CR</scene>, <scene name='pdbligand=CZM:N,N-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE'>CZM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j3f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j3f RCSB], [http://www.ebi.ac.uk/pdbsum/1j3f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j3f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j3f RCSB], [http://www.ebi.ac.uk/pdbsum/1j3f PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC]] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Physeter catodon]]		[[Category: Physeter catodon]]
-	[[Category: Kono, M.]]	+	[[Category: Kono, M]]
-	[[Category: Koshiyama, T.]]	+	[[Category: Koshiyama, T]]
-	[[Category: Ohashi, M.]]	+	[[Category: Ohashi, M]]
-	[[Category: Suzuki, A.]]	+	[[Category: Suzuki, A]]
-	[[Category: Ueno, T.]]	+	[[Category: Ueno, T]]
-	[[Category: Watanabe, Y.]]	+	[[Category: Watanabe, Y]]
-	[[Category: Yamane, T.]]	+	[[Category: Yamane, T]]
	[[Category: Asymmetric catalysis]]		[[Category: Asymmetric catalysis]]
	[[Category: Chromium]]		[[Category: Chromium]]

OCA at 12:24, 28 September 2014

2014-09-28T12:24:00Z

←Older revision		Revision as of 12:24, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1j3f.~~png\|left~~\|200px]]	+	==Crystal Structure of an Artificial Metalloprotein:Cr(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin==
		+	<StructureSection load='1j3f' size='340' side='right' caption='[[1j3f]], [[Resolution\|resolution]] 1.45Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1j3f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1J3F FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CR:CHROMIUM+ION'>CR</scene>, <scene name='pdbligand=CZM:N,N-BIS-(2-HYDROXY-3-METHYL-BENZYLIDENE)-BENZENE-1,2-DIAMINE'>CZM</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1j3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1j3f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1j3f RCSB], [http://www.ebi.ac.uk/pdbsum/1j3f PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/j3/1j3f_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	New methods for the synthesis of artificial metalloenzymes are important for the construction of novel biocatalysts and biomaterials. Recently, we reported new methodology for the synthesis of artificial metalloenzymes by reconstituting apo-myoglobin with metal complexes (Ohashi, M. et al., Angew Chem., Int. Ed. 2003, 42, 1005-1008). However, it has been difficult to improve their reactivity, since their crystal structures were not available. In this article, we report the crystal structures of M(III)(Schiff base).apo-A71GMbs (M = Cr and Mn). The structures suggest that the position of the metal complex in apo-Mb is regulated by (i) noncovalent interaction between the ligand and surrounding peptides and (ii) the ligation of the metal ion to proximal histidine (His93). In addition, it is proposed that specific interactions of Ile107 with 3- and 3'-substituent groups on the salen ligand control the location of the Schiff base ligand in the active site. On the basis of these results, we have successfully controlled the enantioselectivity in the sulfoxidation of thioanisole by changing the size of substituents at the 3 and 3' positions. This is the first example of an enantioselective enzymatic reaction regulated by the design of metal complex in the protein active site.

-	~~{{STRUCTURE_1j3f\| PDB=1j3f \| SCENE= }}~~	+	Coordinated design of cofactor and active site structures in development of new protein catalysts.,Ueno T, Koshiyama T, Ohashi M, Kondo K, Kono M, Suzuki A, Yamane T, Watanabe Y J Am Chem Soc. 2005 May 11;127(18):6556-62. PMID:15869276<ref>PMID:15869276</ref>

-	~~===Crystal Structure of an Artificial Metalloprotein:Cr(III)(3~~,~~3'-Me2-salophen)/apo-A71G Myoglobin===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15869276}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1j3f]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Physeter_catodon Physeter catodon]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA].~~	+

	==See Also==		==See Also==
	*[[Myoglobin\|Myoglobin]]		*[[Myoglobin\|Myoglobin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015869276<~~/~~ref~~><~~ref group="xtra">PMID:015106972</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Physeter catodon]]		[[Category: Physeter catodon]]
	[[Category: Kono, M.]]		[[Category: Kono, M.]]

OCA at 10:58, 20 October 2012

2012-10-20T10:58:15Z

←Older revision		Revision as of 10:58, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1j3f]] is a 1 chain structure ~~of [[Myoglobin]]~~ with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA].	+	[[1j3f]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA].

	==See Also==		==See Also==

OCA at 03:50, 26 July 2012

2012-07-26T03:50:50Z

←Older revision		Revision as of 03:50, 26 July 2012
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	[[Image:1j3f.png\|left\|200px]]		[[Image:1j3f.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1j3f", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1j3f\| PDB=1j3f \| SCENE= }}		{{STRUCTURE_1j3f\| PDB=1j3f \| SCENE= }}

	===Crystal Structure of an Artificial Metalloprotein:Cr(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin===		===Crystal Structure of an Artificial Metalloprotein:Cr(III)(3,3'-Me2-salophen)/apo-A71G Myoglobin===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15869276}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15869276 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_15869276}}		{{ABSTRACT_PUBMED_15869276}}

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	==See Also==		==See Also==
-	*[[Myoglobin]]	+	*[[Myoglobin\|Myoglobin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15869276~~</ref><ref group="xtra">PMID:~~15106972~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015869276</ref><ref group="xtra">PMID:015106972</ref><references group="xtra"/>
	[[Category: Physeter catodon]]		[[Category: Physeter catodon]]
	[[Category: Kono, M.]]		[[Category: Kono, M.]]
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	[[Category: Crystal]]		[[Category: Crystal]]
	[[Category: Myoglobin]]		[[Category: Myoglobin]]
-	[[Category: Oxygen storage/transport complex]]	+	[[Category: Oxygen storage-transport complex]]
	[[Category: Schiff base]]		[[Category: Schiff base]]

OCA: Protected "1j3f" [edit=sysop:move=sysop]

2010-12-27T00:56:37Z

Protected "1j3f" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:56, 27 December 2010

OCA at 00:56, 27 December 2010

2010-12-27T00:56:36Z

←Older revision		Revision as of 00:56, 27 December 2010
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1j3f.png\|left\|200px]]		[[Image:1j3f.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~1J3F~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA]. ~~Relevant biological numbers for this protein at [http://bionumbers.hms.harvard.edu/search.aspx?log~~=~~y&task~~=~~searchbytrmorg&trm~~=~~%22myoglobin%22&org~~=~~%25 B10NUMB3R5~~]	+	[[1j3f]] is a 1 chain structure of [[Myoglobin]] with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA].
		+
		+	==See Also==
		+	*[[Myoglobin]]

	==Reference==		==Reference==
Line 38:		Line 40:
	[[Category: Oxygen storage/transport complex]]		[[Category: Oxygen storage/transport complex]]
	[[Category: Schiff base]]		[[Category: Schiff base]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon May 25 07:59:46 2009''

OCA at 04:59, 25 May 2009

2009-05-25T04:59:46Z

←Older revision		Revision as of 04:59, 25 May 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1J3F is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA].	+	1J3F is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA]. Relevant biological numbers for this protein at [http://bionumbers.hms.harvard.edu/search.aspx?log=y&task=searchbytrmorg&trm=%22myoglobin%22&org=%25 B10NUMB3R5]

	==Reference==		==Reference==
Line 36:		Line 36:
	[[Category: Crystal]]		[[Category: Crystal]]
	[[Category: Myoglobin]]		[[Category: Myoglobin]]
		+	[[Category: Oxygen storage/transport complex]]
	[[Category: Schiff base]]		[[Category: Schiff base]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Feb 17 00~~:56:06 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon May 25 07:59:46 2009''

OCA at 22:56, 16 February 2009

2009-02-16T22:56:07Z

←Older revision		Revision as of 22:56, 16 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1J3F is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA].	+	1J3F is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1J3F OCA].

	==Reference==		==Reference==
-	Coordinated design of cofactor and active site structures in development of new protein catalysts., Ueno T, Koshiyama T, Ohashi M, Kondo K, Kono M, Suzuki A, Yamane T, Watanabe Y, J Am Chem Soc. 2005 May 11;127(18):6556-62. PMID:~~[http:~~/~~/www.ncbi.nlm.nih.gov/pubmed/15869276 15869276]~~	+	<ref group="xtra">PMID:15869276</ref><ref group="xtra">PMID:15106972</ref><references group="xtra"/>
-		+
-	Crystal structures of artificial metalloproteins: tight binding of FeIII(Schiff-Base) by mutation of Ala71 to Gly in apo-myoglobin., Ueno T, Ohashi M, Kono M, Kondo K, Suzuki A, Yamane T, Watanabe Y, Inorg Chem. 2004 May 3;43(9):2852-8. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15106972 15106972]~~	+
	[[Category: Physeter catodon]]		[[Category: Physeter catodon]]
-	[[Category: Single protein]]
	[[Category: Kono, M.]]		[[Category: Kono, M.]]
	[[Category: Koshiyama, T.]]		[[Category: Koshiyama, T.]]
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	[[Category: Schiff base]]		[[Category: Schiff base]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 05~~:27:~~26 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 00:56:06 2009''