1joe - Revision history

OCA at 07:41, 7 February 2024

2024-02-07T07:41:06Z

←Older revision		Revision as of 07:41, 7 February 2024
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	<StructureSection load='1joe' size='340' side='right'caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1joe' size='340' side='right'caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Haein Haein~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JOE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JOE FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>~~, ~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height~~: ~~3em;~~'>~~[[1j6w\|1j6w]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [https://pdbe.org/1joe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [https://www.ebi.ac.uk/pdbsum/1joe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1joe ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [https://pdbe.org/1joe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [https://www.ebi.ac.uk/pdbsum/1joe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1joe ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/LUXS_HAEIN LUXS_HAEIN]] Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD).	+	[https://www.uniprot.org/uniprot/LUXS_HAEIN LUXS_HAEIN] Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Haein~~]]	+	[[Category: Haemophilus influenzae Rd KW20]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chen~~, C C.H~~]]	+	[[Category: Chen CCH]]
-	[[Category: Eisenstein, E]]	+	[[Category: Eisenstein E]]
-	[[Category: Herzberg, O]]	+	[[Category: Herzberg O]]
-	[[Category: Lehmann, C]]	+	[[Category: Lehmann C]]
-	[[Category: Lim, K]]	+	[[Category: Lim K]]
-	[[Category: Parsons~~, J F]]~~	+	[[Category: Parsons JF]]
-	~~[[Category: S2F, Structure 2.Function Project~~]]	+	[[Category: Tempczyk A]]
-	[[Category: Tempczyk, A]]	+
-	~~[[Category: Hi0491]]~~	+
-	~~[[Category: Lux]]~~	+
-	~~[[Category: S2f]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Structure 2 function project]]~~	+
-	~~[[Category: Twinned crystal~~]]	+

OCA at 06:43, 11 August 2021

2021-08-11T06:43:15Z

←Older revision		Revision as of 06:43, 11 August 2021
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	<StructureSection load='1joe' size='340' side='right'caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1joe' size='340' side='right'caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1JOE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JOE FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1j6w\|1j6w]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1j6w\|1j6w]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [~~http~~://pdbe.org/1joe PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1joe PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1joe ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [https://pdbe.org/1joe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [https://www.ebi.ac.uk/pdbsum/1joe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1joe ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/LUXS_HAEIN LUXS_HAEIN]] Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD).	+	[[https://www.uniprot.org/uniprot/LUXS_HAEIN LUXS_HAEIN]] Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:30, 6 November 2019

2019-11-06T09:30:50Z

←Older revision		Revision as of 09:30, 6 November 2019
Line 1:		Line 1:

	==Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae==		==Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae==
-	<StructureSection load='1joe' size='340' side='right' caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='1joe' size='340' side='right'caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JOE FirstGlance]. <br>		<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JOE FirstGlance]. <br>
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Haein]]		[[Category: Haein]]
		+	[[Category: Large Structures]]
	[[Category: Chen, C C.H]]		[[Category: Chen, C C.H]]
	[[Category: Eisenstein, E]]		[[Category: Eisenstein, E]]

OCA at 09:05, 17 January 2018

2018-01-17T09:05:41Z

←Older revision		Revision as of 09:05, 17 January 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae==		==Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae==
	<StructureSection load='1joe' size='340' side='right' caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1joe' size='340' side='right' caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1j6w\|1j6w]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1j6w\|1j6w]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [http://pdbe.org/1joe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [http://www.ebi.ac.uk/pdbsum/1joe PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [http://pdbe.org/1joe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [http://www.ebi.ac.uk/pdbsum/1joe PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1joe ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jo/1joe_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jo/1joe_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 17:08, 8 February 2016

2016-02-08T17:08:01Z

←Older revision		Revision as of 17:08, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1joe ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 13:40, 10 September 2015

2015-09-10T13:40:34Z

←Older revision		Revision as of 13:40, 10 September 2015
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	<StructureSection load='1joe' size='340' side='right' caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1joe' size='340' side='right' caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Haemophilus_influenzae_rd_kw20 Haemophilus influenzae rd kw20~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JOE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JOE FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1j6w\|1j6w]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1j6w\|1j6w]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [http://www.ebi.ac.uk/pdbsum/1joe PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [http://pdbe.org/1joe PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [http://www.ebi.ac.uk/pdbsum/1joe PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Haemophilus influenzae rd kw20~~]]	+	[[Category: Haein]]
	[[Category: Chen, C C.H]]		[[Category: Chen, C C.H]]
	[[Category: Eisenstein, E]]		[[Category: Eisenstein, E]]

OCA at 00:53, 25 December 2014

2014-12-25T00:53:19Z

←Older revision		Revision as of 00:53, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae_rd_kw20 Haemophilus influenzae rd kw20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JOE FirstGlance]. <br>		<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae_rd_kw20 Haemophilus influenzae rd kw20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JOE FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1j6w\|1j6w]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1j6w\|1j6w]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [http://www.ebi.ac.uk/pdbsum/1joe PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [http://www.ebi.ac.uk/pdbsum/1joe PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LUXS_HAEIN LUXS_HAEIN]] Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Haemophilus influenzae rd kw20]]		[[Category: Haemophilus influenzae rd kw20]]
-	[[Category: Chen, C C.H.]]	+	[[Category: Chen, C C.H]]
-	[[Category: Eisenstein, E.]]	+	[[Category: Eisenstein, E]]
-	[[Category: Herzberg, O.]]	+	[[Category: Herzberg, O]]
-	[[Category: Lehmann, C.]]	+	[[Category: Lehmann, C]]
-	[[Category: Lim, K.]]	+	[[Category: Lim, K]]
-	[[Category: Parsons, J F.]]	+	[[Category: Parsons, J F]]
-	[[Category: S2F, Structure 2.Function Project.]]	+	[[Category: S2F, Structure 2.Function Project]]
-	[[Category: Tempczyk, A.]]	+	[[Category: Tempczyk, A]]
	[[Category: Hi0491]]		[[Category: Hi0491]]
	[[Category: Lux]]		[[Category: Lux]]

OCA at 12:05, 28 September 2014

2014-09-28T12:05:07Z

←Older revision		Revision as of 12:05, 28 September 2014
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-	~~[[Image:1joe.png\|left\|200px]]~~	+	==Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae==
-		+	<StructureSection load='1joe' size='340' side='right' caption='[[1joe]], [[Resolution\|resolution]] 2.40Å' scene=''>
-	~~{{STRUCTURE_1joe\| PDB=1joe \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae_rd_kw20 Haemophilus influenzae rd kw20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JOE FirstGlance]. <br>
-	===Crystal Structure of Autoinducer-2 Production Protein (LuxS) from Heamophilus influenzae===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HG:MERCURY+(II)+ION'>HG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1j6w\|1j6w]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1joe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1joe OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1joe RCSB], [http://www.ebi.ac.uk/pdbsum/1joe PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae_rd_kw20 Haemophilus influenzae rd kw20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jo/1joe_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Haemophilus influenzae rd kw20]]		[[Category: Haemophilus influenzae rd kw20]]
	[[Category: Chen, C C.H.]]		[[Category: Chen, C C.H.]]

OCA: Protected "1joe" [edit=sysop:move=sysop]

2012-12-05T11:17:47Z

Protected "1joe" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:17, 5 December 2012

OCA at 11:17, 5 December 2012

2012-12-05T11:17:44Z

←Older revision		Revision as of 11:17, 5 December 2012
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-	{{Seed}}
	[[Image:1joe.png\|left\|200px]]		[[Image:1joe.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1joe", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1joe\| PDB=1joe \| SCENE= }}		{{STRUCTURE_1joe\| PDB=1joe \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1JOE~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Haemophilus_influenzae~~ Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA].	+	[[1joe]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae_rd_kw20 Haemophilus influenzae rd kw20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JOE OCA].
-	[[Category: Haemophilus influenzae]]	+	[[Category: Haemophilus influenzae rd kw20]]
	[[Category: Chen, C C.H.]]		[[Category: Chen, C C.H.]]
	[[Category: Eisenstein, E.]]		[[Category: Eisenstein, E.]]
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	[[Category: Lux]]		[[Category: Lux]]
	[[Category: S2f]]		[[Category: S2f]]
		+	[[Category: Signaling protein]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Structure 2 function project]]		[[Category: Structure 2 function project]]
	[[Category: Twinned crystal]]		[[Category: Twinned crystal]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 00:40:14 2009''