1jzf - Revision history

OCA at 07:56, 3 April 2024

2024-04-03T07:56:11Z

←Older revision		Revision as of 07:56, 3 April 2024
Line 3:		Line 3:
	<StructureSection load='1jzf' size='340' side='right'caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1jzf' size='340' side='right'caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JZF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JZF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [https://pdbe.org/1jzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [https://www.ebi.ac.uk/pdbsum/1jzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [https://pdbe.org/1jzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [https://www.ebi.ac.uk/pdbsum/1jzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.	+	[https://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE] Transfers electrons from cytochrome c551 to cytochrome oxidase.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jzf ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jzf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Rates of reduction of Os(III), Ru(III), and Re(I) by Cu(I) in His83-modified Pseudomonas aeruginosa azurins (M-Cu distance approximately 17 A) have been measured in single crystals, where protein conformation and surface solvation are precisely defined by high-resolution X-ray structure determinations: 1.7(8) x 10(6) s(-1) (298 K), 1.8(8) x 10(6) s(-1) (140 K), [Ru(bpy)2(im)(3+)-]; 3.0(15) x 10(6) s(-1) (298 K), [Ru(tpy)(bpy)(3+)-]; 3.0(15) x 10(6) s(-1) (298 K), [Ru(tpy)(phen)(3+)-]; 9.0(50) x 10(2) s(-1) (298 K), [Os(bpy)2(im)(3+)-]; 4.4(20) x 10(6) s(-1) (298 K), [Re(CO)3(phen)(+)] (bpy = 2,2'-bipyridine; im = imidazole; tpy = 2,2':6',2' '-terpyridine; phen = 1,10-phenanthroline). The time constants for electron tunneling in crystals are roughly the same as those measured in solution, indicating very similar protein structures in the two states. High-resolution structures of the oxidized (1.5 A) and reduced (1.4 A) states of Ru(II)(tpy)(phen)(His83)Az establish that very small changes in copper coordination accompany reduction but reveal a shorter axial interaction between copper and the Gly45 peptide carbonyl oxygen [2.6 A for Cu(II)] than had been recognized previously. Although Ru(bpy)2(im)(His83)Az is less solvated in the crystal, the reorganization energy for Cu(I) --> Ru(III) electron transfer falls in the range (0.6-0.8 eV) determined experimentally for the reaction in solution. Our work suggests that outer-sphere protein reorganization is the dominant activation component required for electron tunneling.
-
-	Electron tunneling in single crystals of Pseudomonas aeruginosa azurins.,Crane BR, Di Bilio AJ, Winkler JR, Gray HB J Am Chem Soc. 2001 Nov 28;123(47):11623-31. PMID:11716717<ref>PMID:11716717</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1jzf" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Azurin 3D structures\|Azurin 3D structures]]		*[[Azurin 3D structures\|Azurin 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Bilio, A J.Di~~]]	+	[[Category: Pseudomonas aeruginosa]]
-	[[Category: Crane~~, B R~~]]	+	[[Category: Crane BR]]
-	[[Category: ~~Gray, H B~~]]	+	[[Category: Di Bilio AJ]]
-	[[Category: ~~Winkler, J R~~]]	+	[[Category: Gray HB]]
-	[[Category: ~~Blue-copper]]~~	+	[[Category: Winkler JR]]
-	~~[[Category: Cu2+]]~~	+
-	~~[[Category: Electron transfer]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Ruthenium]]~~	+
-	~~[[Category: Tunneling~~]]	+

OCA at 06:47, 11 August 2021

2021-08-11T06:47:10Z

←Older revision		Revision as of 06:47, 11 August 2021
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	<StructureSection load='1jzf' size='340' side='right'caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1jzf' size='340' side='right'caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1JZF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JZF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [~~http~~://pdbe.org/1jzf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1jzf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [https://pdbe.org/1jzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [https://www.ebi.ac.uk/pdbsum/1jzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.	+	[[https://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:14, 6 November 2019

2019-11-06T09:14:53Z

←Older revision		Revision as of 09:14, 6 November 2019
Line 1:		Line 1:

	==Pseudomonas aeruginosa Oxidized Azurin(Cu2+) Ru(tpy)(phen)(His83)==		==Pseudomonas aeruginosa Oxidized Azurin(Cu2+) Ru(tpy)(phen)(His83)==
-	<StructureSection load='1jzf' size='340' side='right' caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='1jzf' size='340' side='right'caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZF FirstGlance]. <br>
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1jzf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1jzf" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Azurin 3D structures\|Azurin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Bilio, A J.Di]]		[[Category: Bilio, A J.Di]]
	[[Category: Crane, B R]]		[[Category: Crane, B R]]

OCA at 08:52, 17 January 2018

2018-01-17T08:52:26Z

←Older revision		Revision as of 08:52, 17 January 2018
Line 1:		Line 1:
		+
	==Pseudomonas aeruginosa Oxidized Azurin(Cu2+) Ru(tpy)(phen)(His83)==		==Pseudomonas aeruginosa Oxidized Azurin(Cu2+) Ru(tpy)(phen)(His83)==
	<StructureSection load='1jzf' size='340' side='right' caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1jzf' size='340' side='right' caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [http://pdbe.org/1jzf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [http://www.ebi.ac.uk/pdbsum/1jzf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [http://pdbe.org/1jzf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [http://www.ebi.ac.uk/pdbsum/1jzf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1jzf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/1jzf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/1jzf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1jzf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1jzf" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Azurin\|Azurin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:05, 9 February 2016

2016-02-09T11:05:11Z

←Older revision		Revision as of 11:05, 9 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jzf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 21:41, 10 September 2015

2015-09-10T21:41:21Z

←Older revision		Revision as of 21:41, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1jzf' size='340' side='right' caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1jzf' size='340' side='right' caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_aeruginosa Pseudomonas aeruginosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [http://www.ebi.ac.uk/pdbsum/1jzf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [http://pdbe.org/1jzf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [http://www.ebi.ac.uk/pdbsum/1jzf PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1jzf" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas aeruginosa]]
	[[Category: Bilio, A J.Di]]		[[Category: Bilio, A J.Di]]
	[[Category: Crane, B R]]		[[Category: Crane, B R]]

OCA at 06:28, 25 December 2014

2014-12-25T06:28:13Z

←Older revision		Revision as of 06:28, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [http://www.ebi.ac.uk/pdbsum/1jzf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [http://www.ebi.ac.uk/pdbsum/1jzf PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/AZUR_PSEAE AZUR_PSEAE]] Transfers electrons from cytochrome c551 to cytochrome oxidase.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: Bilio, A J.Di.]]	+	[[Category: Bilio, A J.Di]]
-	[[Category: Crane, B R.]]	+	[[Category: Crane, B R]]
-	[[Category: Gray, H B.]]	+	[[Category: Gray, H B]]
-	[[Category: Winkler, J R.]]	+	[[Category: Winkler, J R]]
	[[Category: Blue-copper]]		[[Category: Blue-copper]]
	[[Category: Cu2+]]		[[Category: Cu2+]]

OCA at 14:07, 28 September 2014

2014-09-28T14:07:41Z

←Older revision		Revision as of 14:07, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1jzf.~~png~~\|~~left~~\|200px]]	+	==Pseudomonas aeruginosa Oxidized Azurin(Cu2+) Ru(tpy)(phen)(His83)==
		+	<StructureSection load='1jzf' size='340' side='right' caption='[[1jzf]], [[Resolution\|resolution]] 1.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1jzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1JZF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=IME:TETRA(IMIDAZOLE)DIAQUACOPPER+(II)'>IME</scene>, <scene name='pdbligand=RTB:(2,2 6,2-TERPYRIDINE)-(1,10-PHENANTHROLINE)+RUTHENIUM+(II)'>RTB</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1jze\|1jze]], [[1jzg\|1jzg]], [[1jzh\|1jzh]], [[1jzi\|1jzi]], [[1jzj\|1jzj]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1jzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jzf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1jzf RCSB], [http://www.ebi.ac.uk/pdbsum/1jzf PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jz/1jzf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Rates of reduction of Os(III), Ru(III), and Re(I) by Cu(I) in His83-modified Pseudomonas aeruginosa azurins (M-Cu distance approximately 17 A) have been measured in single crystals, where protein conformation and surface solvation are precisely defined by high-resolution X-ray structure determinations: 1.7(8) x 10(6) s(-1) (298 K), 1.8(8) x 10(6) s(-1) (140 K), [Ru(bpy)2(im)(3+)-]; 3.0(15) x 10(6) s(-1) (298 K), [Ru(tpy)(bpy)(3+)-]; 3.0(15) x 10(6) s(-1) (298 K), [Ru(tpy)(phen)(3+)-]; 9.0(50) x 10(2) s(-1) (298 K), [Os(bpy)2(im)(3+)-]; 4.4(20) x 10(6) s(-1) (298 K), [Re(CO)3(phen)(+)] (bpy = 2,2'-bipyridine; im = imidazole; tpy = 2,2':6',2' '-terpyridine; phen = 1,10-phenanthroline). The time constants for electron tunneling in crystals are roughly the same as those measured in solution, indicating very similar protein structures in the two states. High-resolution structures of the oxidized (1.5 A) and reduced (1.4 A) states of Ru(II)(tpy)(phen)(His83)Az establish that very small changes in copper coordination accompany reduction but reveal a shorter axial interaction between copper and the Gly45 peptide carbonyl oxygen [2.6 A for Cu(II)] than had been recognized previously. Although Ru(bpy)2(im)(His83)Az is less solvated in the crystal, the reorganization energy for Cu(I) --> Ru(III) electron transfer falls in the range (0.6-0.8 eV) determined experimentally for the reaction in solution. Our work suggests that outer-sphere protein reorganization is the dominant activation component required for electron tunneling.

-	~~{{STRUCTURE_1jzf\| PDB=1jzf \| SCENE= }}~~	+	Electron tunneling in single crystals of Pseudomonas aeruginosa azurins.,Crane BR, Di Bilio AJ, Winkler JR, Gray HB J Am Chem Soc. 2001 Nov 28;123(47):11623-31. PMID:11716717<ref>PMID:11716717</ref>

-	~~===Pseudomonas aeruginosa Oxidized Azurin(Cu2+) Ru(tpy)(phen)(His83)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_11716717}}~~	+	==See Also==
-		+	*[[Azurin\|Azurin]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~1jzf~~]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:011716717<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Bilio, A J.Di.]]		[[Category: Bilio, A J.Di.]]

OCA: Protected "1jzf" [edit=sysop:move=sysop]

2012-12-05T11:29:04Z

Protected "1jzf" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:29, 5 December 2012

OCA at 11:29, 5 December 2012

2012-12-05T11:29:02Z

←Older revision		Revision as of 11:29, 5 December 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1jzf.png\|left\|200px]]		[[Image:1jzf.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1jzf", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1jzf\| PDB=1jzf \| SCENE= }}		{{STRUCTURE_1jzf\| PDB=1jzf \| SCENE= }}

	===Pseudomonas aeruginosa Oxidized Azurin(Cu2+) Ru(tpy)(phen)(His83)===		===Pseudomonas aeruginosa Oxidized Azurin(Cu2+) Ru(tpy)(phen)(His83)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11716717}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11716717 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11716717}}		{{ABSTRACT_PUBMED_11716717}}

	==About this Structure==		==About this Structure==
-	~~1JZF~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA].	+	[[1jzf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JZF OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11716717~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011716717</ref><references group="xtra"/>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Bilio, A J.Di.]]		[[Category: Bilio, A J.Di.]]
Line 32:		Line 20:
	[[Category: Cu2+]]		[[Category: Cu2+]]
	[[Category: Electron transfer]]		[[Category: Electron transfer]]
		+	[[Category: Electron transport]]
	[[Category: Ruthenium]]		[[Category: Ruthenium]]
	[[Category: Tunneling]]		[[Category: Tunneling]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 09:22:05 2009''