1kp4 - Revision history

OCA at 07:16, 25 October 2023

2023-10-25T07:16:43Z

←Older revision		Revision as of 07:16, 25 October 2023
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	<StructureSection load='1kp4' size='340' side='right'caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1kp4' size='340' side='right'caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"actinomyces_violaceus-ruber"_(sic)_waksman_and_curtis_1916 "actinomyces violaceus-ruber" (sic) waksman and curtis 1916~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [https://pdbe.org/1kp4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [https://www.ebi.ac.uk/pdbsum/1kp4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kp4 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [https://pdbe.org/1kp4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [https://www.ebi.ac.uk/pdbsum/1kp4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kp4 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6UV28_STRVN Q6UV28_STRVN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Katsube, Y~~]]	+	[[Category: Streptomyces violaceoruber]]
-	[[Category: ~~Matoba,~~ Y]]	+	[[Category: Katsube Y]]
-	[[Category: ~~Sugiyama, M~~]]	+	[[Category: Matoba Y]]
-	[[Category: ~~Calcium ion]]~~	+	[[Category: Sugiyama M]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Phospholipase a2]]~~	+
-	~~[[Category: Prokaryote~~]]	+

OCA at 08:49, 21 April 2021

2021-04-21T08:49:32Z

←Older revision		Revision as of 08:49, 21 April 2021
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	<StructureSection load='1kp4' size='340' side='right'caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1kp4' size='340' side='right'caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"actinomyces_violaceus-ruber"_(sic)_waksman_and_curtis_1916 "actinomyces violaceus-ruber" (sic) waksman and curtis 1916]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_violaceus-ruber"_(sic)_waksman_and_curtis_1916 "actinomyces violaceus-ruber" (sic) waksman and curtis 1916]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [~~http~~://pdbe.org/1kp4 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1kp4 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1kp4 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [https://pdbe.org/1kp4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [https://www.ebi.ac.uk/pdbsum/1kp4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kp4 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	==See Also==		==See Also==
-	*[[Phospholipase A2\|Phospholipase A2]]	+	*[[Phospholipase A2 3D structures\|Phospholipase A2 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:36, 17 July 2019

2019-07-17T13:36:43Z

←Older revision		Revision as of 13:36, 17 July 2019
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	==CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2==		==CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2==
-	<StructureSection load='1kp4' size='340' side='right' caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='1kp4' size='340' side='right'caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_violaceus-ruber"_(sic)_waksman_and_curtis_1916 "actinomyces violaceus-ruber" (sic) waksman and curtis 1916]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_violaceus-ruber"_(sic)_waksman_and_curtis_1916 "actinomyces violaceus-ruber" (sic) waksman and curtis 1916]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kp/1kp4_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kp/1kp4_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 35:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Katsube, Y]]		[[Category: Katsube, Y]]
	[[Category: Matoba, Y]]		[[Category: Matoba, Y]]

OCA at 07:25, 11 October 2017

2017-10-11T07:25:50Z

←Older revision		Revision as of 07:25, 11 October 2017
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		+
	==CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2==		==CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2==
	<StructureSection load='1kp4' size='340' side='right' caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1kp4' size='340' side='right' caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>
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	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [http://pdbe.org/1kp4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [http://www.ebi.ac.uk/pdbsum/1kp4 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [http://pdbe.org/1kp4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [http://www.ebi.ac.uk/pdbsum/1kp4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1kp4 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kp4 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 08:48, 11 September 2015

2015-09-11T08:48:26Z

←Older revision		Revision as of 08:48, 11 September 2015
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	<StructureSection load='1kp4' size='340' side='right' caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1kp4' size='340' side='right' caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptomyces_violaceoruber Streptomyces violaceoruber~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_violaceus-ruber"_(sic)_waksman_and_curtis_1916 "actinomyces violaceus-ruber" (sic) waksman and curtis 1916]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [http://www.ebi.ac.uk/pdbsum/1kp4 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [http://pdbe.org/1kp4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [http://www.ebi.ac.uk/pdbsum/1kp4 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1kp4" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Streptomyces violaceoruber]]
	[[Category: Katsube, Y]]		[[Category: Katsube, Y]]
	[[Category: Matoba, Y]]		[[Category: Matoba, Y]]

OCA at 17:03, 5 January 2015

2015-01-05T17:03:18Z

←Older revision		Revision as of 17:03, 5 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [http://www.ebi.ac.uk/pdbsum/1kp4 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [http://www.ebi.ac.uk/pdbsum/1kp4 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Streptomyces violaceoruber]]		[[Category: Streptomyces violaceoruber]]
-	[[Category: Katsube, Y.]]	+	[[Category: Katsube, Y]]
-	[[Category: Matoba, Y.]]	+	[[Category: Matoba, Y]]
-	[[Category: Sugiyama, M.]]	+	[[Category: Sugiyama, M]]
	[[Category: Calcium ion]]		[[Category: Calcium ion]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Phospholipase a2]]		[[Category: Phospholipase a2]]
	[[Category: Prokaryote]]		[[Category: Prokaryote]]

OCA at 16:15, 28 September 2014

2014-09-28T16:15:16Z

←Older revision		Revision as of 16:15, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1kp4.~~png~~\|~~left~~\|200px]]	+	==CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2==
		+	<StructureSection load='1kp4' size='340' side='right' caption='[[1kp4]], [[Resolution\|resolution]] 1.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1kp4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1KP4 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1faz\|1faz]], [[1it4\|1it4]], [[1it5\|1it5]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phospholipase_A(2) Phospholipase A(2)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.4 3.1.1.4] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1kp4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kp4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1kp4 RCSB], [http://www.ebi.ac.uk/pdbsum/1kp4 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kp/1kp4_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In this study, the x-ray crystal structures of the calcium-free and calcium-bound forms of phospholipase A(2) (PLA(2)), produced extracellularly by Streptomyces violaceoruber, were determined by using the multiple isomorphous replacement and molecular replacement methods, respectively. The former and latter structures were refined to an R-factor of 18.8% at a 1.4-A resolution and an R-factor of 15.0% at a 1.6-A resolution, respectively. The overall structure of the prokaryotic PLA(2) exhibits a novel folding topology that demonstrates that it is completely distinct from those of eukaryotic PLA(2)s, which have been already determined by x-ray and NMR analyses. Furthermore, the coordination geometry of the calcium(II) ion apparently deviated from that of eukaryotic PLA(2)s. Regardless of the evolutionary divergence, the catalytic mechanism including the calcium(II) ion on secreted PLA(2) seems to be conserved between prokaryotic and eukaryotic cells. Demonstrating that the overall structure determined by x-ray analysis is almost the same as that determined by NMR analysis is useful to discuss the catalytic mechanism at the molecular level of the bacterial PLA(2).

-	~~{{STRUCTURE_1kp4\| PDB=1kp4 \| SCENE= }}~~	+	The crystal structure of prokaryotic phospholipase A2.,Matoba Y, Katsube Y, Sugiyama M J Biol Chem. 2002 May 31;277(22):20059-69. Epub 2002 Mar 15. PMID:11897785<ref>PMID:11897785</ref>

-	~~===CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_11897785}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1kp4]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA].~~	+

	==See Also==		==See Also==
	*[[Phospholipase A2\|Phospholipase A2]]		*[[Phospholipase A2\|Phospholipase A2]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:011897785<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Streptomyces violaceoruber]]		[[Category: Streptomyces violaceoruber]]
	[[Category: Katsube, Y.]]		[[Category: Katsube, Y.]]

OCA at 17:35, 20 October 2012

2012-10-20T17:35:51Z

←Older revision		Revision as of 17:35, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1kp4]] is a 1 chain structure ~~of [[Phospholipase A2]]~~ with sequence from [http://en.wikipedia.org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA].	+	[[1kp4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA].

	==See Also==		==See Also==

OCA: Protected "1kp4" [edit=sysop:move=sysop]

2012-07-27T01:26:07Z

Protected "1kp4" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:26, 27 July 2012

OCA at 01:26, 27 July 2012

2012-07-27T01:26:05Z

←Older revision		Revision as of 01:26, 27 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1kp4.png\|left\|200px]]		[[Image:1kp4.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1kp4", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1kp4\| PDB=1kp4 \| SCENE= }}		{{STRUCTURE_1kp4\| PDB=1kp4 \| SCENE= }}

	===CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2===		===CALCIUM-BOUND FORM OF PROKARYOTIC PHOSPHOLIPASE A2===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_11897785}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 11897785 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_11897785}}		{{ABSTRACT_PUBMED_11897785}}

	==About this Structure==		==About this Structure==
-	~~1KP4~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA].	+	[[1kp4]] is a 1 chain structure of [[Phospholipase A2]] with sequence from [http://en.wikipedia.org/wiki/Streptomyces_violaceoruber Streptomyces violaceoruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KP4 OCA].
		+
		+	==See Also==
		+	*[[Phospholipase A2\|Phospholipase A2]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~11897785~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:011897785</ref><references group="xtra"/>
	[[Category: Streptomyces violaceoruber]]		[[Category: Streptomyces violaceoruber]]
	[[Category: Katsube, Y.]]		[[Category: Katsube, Y.]]
Line 29:		Line 20:
	[[Category: Sugiyama, M.]]		[[Category: Sugiyama, M.]]
	[[Category: Calcium ion]]		[[Category: Calcium ion]]
		+	[[Category: Hydrolase]]
	[[Category: Phospholipase a2]]		[[Category: Phospholipase a2]]
	[[Category: Prokaryote]]		[[Category: Prokaryote]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 18:11:41 2009''