1l3a - Revision history

OCA at 07:29, 14 February 2024

2024-02-14T07:29:47Z

←Older revision		Revision as of 07:29, 14 February 2024
Line 3:		Line 3:
	<StructureSection load='1l3a' size='340' side='right'caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1l3a' size='340' side='right'caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Potato Potato~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L3A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L3A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [https://pdbe.org/1l3a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [https://www.ebi.ac.uk/pdbsum/1l3a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3a ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [https://pdbe.org/1l3a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [https://www.ebi.ac.uk/pdbsum/1l3a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3a ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/WHY1_SOLTU WHY1_SOLTU]] Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression.<ref>PMID:10948264</ref> <ref>PMID:12080340</ref> <ref>PMID:14960277</ref>	+	[https://www.uniprot.org/uniprot/WHY1_SOLTU WHY1_SOLTU] Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression.<ref>PMID:10948264</ref> <ref>PMID:12080340</ref> <ref>PMID:14960277</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l3a ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l3a ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The crystal structure of p24, the single-stranded DNA (ssDNA) binding subunit of the plant defense transcription factor PBF-2, has been determined to 2.3 A resolution. p24 is representative of a novel family of ubiquitous plant-specific proteins that we refer to as the Whirly family because of their quaternary structure. PBF-2 is composed of four p24 molecules that interact through a helix-loop-helix motif. This interaction produces a central pore, with beta-strands radiating outwards, resulting in a whirligig appearance to the quaternary structure. The noncrystallographic C(4) symmetry arrangement of p24 subunits is novel for ssDNA binding proteins and may explain the binding specificity of PBF-2. This structural arrangement also supports the role of PBF-2 in binding melted promoter regions to modulate gene expression.
-
-	A new family of plant transcription factors displays a novel ssDNA-binding surface.,Desveaux D, Allard J, Brisson N, Sygusch J Nat Struct Biol. 2002 Jul;9(7):512-7. PMID:12080340<ref>PMID:12080340</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1l3a" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Potato~~]]	+	[[Category: Solanum tuberosum]]
-	[[Category: Allard, J]]	+	[[Category: Allard J]]
-	[[Category: Brisson, N]]	+	[[Category: Brisson N]]
-	[[Category: Desveaux, D]]	+	[[Category: Desveaux D]]
-	[[Category: Sygusch, J]]	+	[[Category: Sygusch J]]
-	~~[[Category: Cyclic c4 symmetry]]~~	+
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Pbf-2]]~~	+
-	~~[[Category: Plant]]~~	+
-	~~[[Category: Single strand dna binding protein]]~~	+
-	~~[[Category: Transcriptionnal activator]]~~	+
-	~~[[Category: Whirly~~]]	+

OCA at 05:52, 28 April 2021

2021-04-28T05:52:02Z

←Older revision		Revision as of 05:52, 28 April 2021
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	<StructureSection load='1l3a' size='340' side='right'caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1l3a' size='340' side='right'caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1L3A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L3A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [~~http~~://pdbe.org/1l3a PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1l3a PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3a ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [https://pdbe.org/1l3a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [https://www.ebi.ac.uk/pdbsum/1l3a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3a ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/WHY1_SOLTU WHY1_SOLTU]] Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression.<ref>PMID:10948264</ref> <ref>PMID:12080340</ref> <ref>PMID:14960277</ref>	+	[[https://www.uniprot.org/uniprot/WHY1_SOLTU WHY1_SOLTU]] Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression.<ref>PMID:10948264</ref> <ref>PMID:12080340</ref> <ref>PMID:14960277</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 09:38, 24 July 2019

2019-07-24T09:38:13Z

←Older revision		Revision as of 09:38, 24 July 2019
Line 1:		Line 1:

	==Structure of the plant transcriptional regulator PBF-2==		==Structure of the plant transcriptional regulator PBF-2==
-	<StructureSection load='1l3a' size='340' side='right' caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='1l3a' size='340' side='right'caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>		<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l3/1l3a_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l3/1l3a_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Potato]]		[[Category: Potato]]
	[[Category: Allard, J]]		[[Category: Allard, J]]

OCA at 10:56, 18 October 2017

2017-10-18T10:56:03Z

←Older revision		Revision as of 10:56, 18 October 2017
Line 1:		Line 1:
		+
	==Structure of the plant transcriptional regulator PBF-2==		==Structure of the plant transcriptional regulator PBF-2==
	<StructureSection load='1l3a' size='340' side='right' caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1l3a' size='340' side='right' caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>		<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [http://pdbe.org/1l3a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [http://www.ebi.ac.uk/pdbsum/1l3a PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [http://pdbe.org/1l3a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [http://www.ebi.ac.uk/pdbsum/1l3a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1l3a ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1l3a ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:18, 12 September 2015

2015-09-12T00:18:18Z

←Older revision		Revision as of 00:18, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1l3a' size='340' side='right' caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='1l3a' size='340' side='right' caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Solanum_tuberosum Solanum tuberosum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [http://www.ebi.ac.uk/pdbsum/1l3a PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [http://pdbe.org/1l3a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [http://www.ebi.ac.uk/pdbsum/1l3a PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~Q9LL85_SOLTU Q9LL85_SOLTU~~]] Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression.<ref>PMID:10948264</ref> <ref>PMID:~~14960277~~</ref> <ref>PMID:~~12080340~~</ref>	+	[[http://www.uniprot.org/uniprot/WHY1_SOLTU WHY1_SOLTU]] Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression.<ref>PMID:10948264</ref> <ref>PMID:12080340</ref> <ref>PMID:14960277</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1l3a" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Solanum tuberosum~~]]	+	[[Category: Potato]]
	[[Category: Allard, J]]		[[Category: Allard, J]]
	[[Category: Brisson, N]]		[[Category: Brisson, N]]

OCA at 21:18, 25 December 2014

2014-12-25T21:18:39Z

←Older revision		Revision as of 21:18, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>		<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [http://www.ebi.ac.uk/pdbsum/1l3a PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [http://www.ebi.ac.uk/pdbsum/1l3a PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q9LL85_SOLTU Q9LL85_SOLTU]] Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression.<ref>PMID:10948264</ref> <ref>PMID:14960277</ref> <ref>PMID:12080340</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
-	[[Category: Allard, J.]]	+	[[Category: Allard, J]]
-	[[Category: Brisson, N.]]	+	[[Category: Brisson, N]]
-	[[Category: Desveaux, D.]]	+	[[Category: Desveaux, D]]
-	[[Category: Sygusch, J.]]	+	[[Category: Sygusch, J]]
	[[Category: Cyclic c4 symmetry]]		[[Category: Cyclic c4 symmetry]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]

OCA at 15:50, 28 September 2014

2014-09-28T15:50:35Z

←Older revision		Revision as of 15:50, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1l3a.~~png\|left~~\|200px]]	+	==Structure of the plant transcriptional regulator PBF-2==
		+	<StructureSection load='1l3a' size='340' side='right' caption='[[1l3a]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1L3A FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1l3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l3a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1l3a RCSB], [http://www.ebi.ac.uk/pdbsum/1l3a PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/l3/1l3a_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of p24, the single-stranded DNA (ssDNA) binding subunit of the plant defense transcription factor PBF-2, has been determined to 2.3 A resolution. p24 is representative of a novel family of ubiquitous plant-specific proteins that we refer to as the Whirly family because of their quaternary structure. PBF-2 is composed of four p24 molecules that interact through a helix-loop-helix motif. This interaction produces a central pore, with beta-strands radiating outwards, resulting in a whirligig appearance to the quaternary structure. The noncrystallographic C(4) symmetry arrangement of p24 subunits is novel for ssDNA binding proteins and may explain the binding specificity of PBF-2. This structural arrangement also supports the role of PBF-2 in binding melted promoter regions to modulate gene expression.

-	~~{{STRUCTURE_1l3a\| PDB=1l3a \| SCENE= }}~~	+	A new family of plant transcription factors displays a novel ssDNA-binding surface.,Desveaux D, Allard J, Brisson N, Sygusch J Nat Struct Biol. 2002 Jul;9(7):512-7. PMID:12080340<ref>PMID:12080340</ref>

-	~~===Structure~~ of the ~~plant transcriptional regulator PBF-2===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12080340}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1l3a]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Solanum_tuberosum Solanum tuberosum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:012080340<~~/~~ref~~><~~ref group="xtra">PMID:020551348</ref><references group="xtra"~~/>	+
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
	[[Category: Allard, J.]]		[[Category: Allard, J.]]

OCA: Protected "1l3a" [edit=sysop:move=sysop]

2012-12-05T20:28:13Z

Protected "1l3a" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:28, 5 December 2012

OCA at 20:28, 5 December 2012

2012-12-05T20:28:10Z

←Older revision		Revision as of 20:28, 5 December 2012
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-	{{Seed}}
	[[Image:1l3a.png\|left\|200px]]		[[Image:1l3a.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1l3a", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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-	-->
	{{STRUCTURE_1l3a\| PDB=1l3a \| SCENE= }}		{{STRUCTURE_1l3a\| PDB=1l3a \| SCENE= }}

	===Structure of the plant transcriptional regulator PBF-2===		===Structure of the plant transcriptional regulator PBF-2===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12080340}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 12080340 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_12080340}}		{{ABSTRACT_PUBMED_12080340}}

	==About this Structure==		==About this Structure==
-	~~1L3A~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA].	+	[[1l3a]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12080340~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012080340</ref><ref group="xtra">PMID:020551348</ref><references group="xtra"/>
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
	[[Category: Allard, J.]]		[[Category: Allard, J.]]
Line 30:		Line 18:
	[[Category: Sygusch, J.]]		[[Category: Sygusch, J.]]
	[[Category: Cyclic c4 symmetry]]		[[Category: Cyclic c4 symmetry]]
		+	[[Category: Dna binding protein]]
	[[Category: Pbf-2]]		[[Category: Pbf-2]]
	[[Category: Plant]]		[[Category: Plant]]
Line 35:		Line 24:
	[[Category: Transcriptionnal activator]]		[[Category: Transcriptionnal activator]]
	[[Category: Whirly]]		[[Category: Whirly]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 07:54:35 2009''

OCA at 05:54, 18 February 2009

2009-02-18T05:54:35Z

←Older revision		Revision as of 05:54, 18 February 2009
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	==About this Structure==		==About this Structure==
-	1L3A is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA].	+	1L3A is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L3A OCA].

	==Reference==		==Reference==
-	~~A new family of plant transcription factors displays a novel ssDNA-binding surface., Desveaux D, Allard J, Brisson N, Sygusch J, Nat Struct Biol. 2002 Jul;9(7):512-7.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/12080340 12080340]~~	+	<ref group="xtra">PMID:12080340</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
	[[Category: Allard, J.]]		[[Category: Allard, J.]]
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	[[Category: Whirly]]		[[Category: Whirly]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed ~~Jul 2 11~~:36:~~25 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 07:54:35 2009''