1ls8 - Revision history

OCA at 08:27, 10 April 2024

2024-04-10T08:27:03Z

←Older revision		Revision as of 08:27, 10 April 2024
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	==NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH==		==NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH==
-	<StructureSection load='1ls8' size='340' side='right'caption='[[1ls8~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='1ls8' size='340' side='right'caption='[[1ls8]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bommo Bommo~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [https://pdbe.org/1ls8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ls8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ls8 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [https://pdbe.org/1ls8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ls8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ls8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PBP_BOMMO PBP_BOMMO]] This major soluble protein in olfactory sensilla of male moths serves to solubilize the extremely hydrophobic pheromone molecules such as bombykol and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.	+	[https://www.uniprot.org/uniprot/PBP_BOMMO PBP_BOMMO] This major soluble protein in olfactory sensilla of male moths serves to solubilize the extremely hydrophobic pheromone molecules such as bombykol and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ls8 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ls8 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The nuclear magnetic resonance structure of the unliganded pheromone-binding protein (PBP) from Bombyx mori at pH above 6.5, BmPBP(B), consists of seven helices with residues 3-8, 16-22, 29-32, 46-59, 70-79, 84-100, and 107-124, and contains the three disulfide bridges 19-54, 50-108, and 97-117. This polypeptide fold encloses a large hydrophobic cavity, with a sufficient volume to accommodate the natural ligand bombykol. The polypeptide folds in free BmPBP(B) and in crystals of a BmPBP-bombykol complex are nearly identical, indicating that the B-form of BmPBP in solution represents the active conformation for ligand binding.
-
-	NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH.,Lee D, Damberger FF, Peng G, Horst R, Guntert P, Nikonova L, Leal WS, Wuthrich K FEBS Lett. 2002 Nov 6;531(2):314-8. PMID:12417333<ref>PMID:12417333</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1ls8" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Odorant binding protein\|Odorant binding protein]]		*[[Odorant binding protein\|Odorant binding protein]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bommo~~]]	+	[[Category: Bombyx mori]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Damberger, F]]	+	[[Category: Damberger F]]
-	[[Category: Guntert, P]]	+	[[Category: Guntert P]]
-	[[Category: Horst, R]]	+	[[Category: Horst R]]
-	[[Category: Leal~~, W S~~]]	+	[[Category: Leal WS]]
-	[[Category: Lee, D]]	+	[[Category: Lee D]]
-	[[Category: Wuthrich, K]]	+	[[Category: Wuthrich K]]
-	~~[[Category: Bmpbp]]~~	+
-	~~[[Category: Bmpbpb]]~~	+
-	~~[[Category: Pheromone binding protein]]~~	+
-	~~[[Category: Solution structure]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 06:48, 18 August 2021

2021-08-18T06:48:38Z

←Older revision		Revision as of 06:48, 18 August 2021
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	<StructureSection load='1ls8' size='340' side='right'caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1ls8' size='340' side='right'caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bommo Bommo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bommo Bommo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [~~http~~://pdbe.org/1ls8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ls8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ls8 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [https://pdbe.org/1ls8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [https://www.ebi.ac.uk/pdbsum/1ls8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ls8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PBP_BOMMO PBP_BOMMO]] This major soluble protein in olfactory sensilla of male moths serves to solubilize the extremely hydrophobic pheromone molecules such as bombykol and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.	+	[[https://www.uniprot.org/uniprot/PBP_BOMMO PBP_BOMMO]] This major soluble protein in olfactory sensilla of male moths serves to solubilize the extremely hydrophobic pheromone molecules such as bombykol and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 12:01, 13 November 2019

2019-11-13T12:01:46Z

←Older revision		Revision as of 12:01, 13 November 2019
Line 1:		Line 1:

	==NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH==		==NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH==
-	<StructureSection load='1ls8' size='340' side='right' caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='1ls8' size='340' side='right'caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>
Line 27:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1ls8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1ls8" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Odorant binding protein\|Odorant binding protein]]
	== References ==		== References ==
	<references/>		<references/>
Line 32:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Bommo]]		[[Category: Bommo]]
		+	[[Category: Large Structures]]
	[[Category: Damberger, F]]		[[Category: Damberger, F]]
	[[Category: Guntert, P]]		[[Category: Guntert, P]]

OCA at 07:40, 31 January 2018

2018-01-31T07:40:06Z

←Older revision		Revision as of 07:40, 31 January 2018
Line 1:		Line 1:
		+
	==NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH==		==NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH==
	<StructureSection load='1ls8' size='340' side='right' caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1ls8' size='340' side='right' caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [http://pdbe.org/1ls8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ls8 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [http://pdbe.org/1ls8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ls8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ls8 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ls/1ls8_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ls/1ls8_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 1ls8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1ls8" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Odorant binding protein\|Odorant binding protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 01:55, 8 February 2016

2016-02-08T01:55:37Z

←Older revision		Revision as of 01:55, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ls8 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:47, 10 September 2015

2015-09-10T06:47:10Z

←Older revision		Revision as of 06:47, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1ls8' size='340' side='right' caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1ls8' size='340' side='right' caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bombyx_mori Bombyx mori~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bommo Bommo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ls8 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [http://pdbe.org/1ls8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ls8 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1ls8" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bombyx mori~~]]	+	[[Category: Bommo]]
	[[Category: Damberger, F]]		[[Category: Damberger, F]]
	[[Category: Guntert, P]]		[[Category: Guntert, P]]

OCA at 11:30, 5 March 2015

2015-03-05T11:30:53Z

←Older revision		Revision as of 11:30, 5 March 2015
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+
		+	==See Also==
		+	*[[Odorant binding protein\|Odorant binding protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 19:42, 24 December 2014

2014-12-24T19:42:40Z

←Older revision		Revision as of 19:42, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ls8 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ls8 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PBP_BOMMO PBP_BOMMO]] This major soluble protein in olfactory sensilla of male moths serves to solubilize the extremely hydrophobic pheromone molecules such as bombykol and to transport pheromone through the aqueous lymph to receptors located on olfactory cilia.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Bombyx mori]]		[[Category: Bombyx mori]]
-	[[Category: Damberger, F.]]	+	[[Category: Damberger, F]]
-	[[Category: Guntert, P.]]	+	[[Category: Guntert, P]]
-	[[Category: Horst, R.]]	+	[[Category: Horst, R]]
-	[[Category: Leal, W S.]]	+	[[Category: Leal, W S]]
-	[[Category: Lee, D.]]	+	[[Category: Lee, D]]
-	[[Category: Wuthrich, K.]]	+	[[Category: Wuthrich, K]]
	[[Category: Bmpbp]]		[[Category: Bmpbp]]
	[[Category: Bmpbpb]]		[[Category: Bmpbpb]]

OCA at 15:21, 28 September 2014

2014-09-28T15:21:28Z

←Older revision		Revision as of 15:21, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1ls8.~~png\|left~~\|200px]]	+	==NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH==
		+	<StructureSection load='1ls8' size='340' side='right' caption='[[1ls8]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1ls8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1LS8 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ls8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ls8 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ls8 RCSB], [http://www.ebi.ac.uk/pdbsum/1ls8 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ls/1ls8_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The nuclear magnetic resonance structure of the unliganded pheromone-binding protein (PBP) from Bombyx mori at pH above 6.5, BmPBP(B), consists of seven helices with residues 3-8, 16-22, 29-32, 46-59, 70-79, 84-100, and 107-124, and contains the three disulfide bridges 19-54, 50-108, and 97-117. This polypeptide fold encloses a large hydrophobic cavity, with a sufficient volume to accommodate the natural ligand bombykol. The polypeptide folds in free BmPBP(B) and in crystals of a BmPBP-bombykol complex are nearly identical, indicating that the B-form of BmPBP in solution represents the active conformation for ligand binding.

-	~~{{STRUCTURE_1ls8\| PDB=1ls8 \| SCENE= }}~~	+	NMR structure of the unliganded Bombyx mori pheromone-binding protein at physiological pH.,Lee D, Damberger FF, Peng G, Horst R, Guntert P, Nikonova L, Leal WS, Wuthrich K FEBS Lett. 2002 Nov 6;531(2):314-8. PMID:12417333<ref>PMID:12417333</ref>

-	~~===NMR structure~~ of the ~~unliganded Bombyx mori pheromone-binding protein at physiological pH===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12417333}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1ls8]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bombyx_mori Bombyx mori]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1LS8 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:012417333<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Bombyx mori]]		[[Category: Bombyx mori]]
	[[Category: Damberger, F.]]		[[Category: Damberger, F.]]

OCA: Protected "1ls8" [edit=sysop:move=sysop]

2012-12-05T19:32:55Z

Protected "1ls8" [edit=sysop:move=sysop]

←Older revision

Revision as of 19:32, 5 December 2012