1obo - Revision history

OCA at 12:34, 13 December 2023

2023-12-13T12:34:09Z

←Older revision		Revision as of 12:34, 13 December 2023
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	<StructureSection load='1obo' size='340' side='right'caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1obo' size='340' side='right'caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Anabaena_pcc7119 Anabaena pcc7119~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OBO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7119 Nostoc sp. PCC 7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OBO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1dx9\|1dx9]]~~, ~~[[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [https://pdbe.org/1obo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [https://www.ebi.ac.uk/pdbsum/1obo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1obo ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [https://pdbe.org/1obo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [https://www.ebi.ac.uk/pdbsum/1obo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1obo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~FLAV_NOSS1 FLAV_NOSS1]~~] Low-potential electron donor to a number of redox enzymes.	+	[https://www.uniprot.org/uniprot/FLAV_NOSSO FLAV_NOSSO] Low-potential electron donor to a number of redox enzymes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anabaena pcc7119]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fernandez-Cabrera, C]]	+	[[Category: Nostoc sp. PCC 7119]]
-	[[Category: Irun~~, M P~~]]	+	[[Category: Fernandez-Cabrera C]]
-	[[Category: Ramon, A]]	+	[[Category: Irun MP]]
-	[[Category: Romero, A]]	+	[[Category: Ramon A]]
-	[[Category: Sancho, J]]	+	[[Category: Romero A]]
-	~~[[Category: Electron transfer]]~~	+	[[Category: Sancho J]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Flavoprotein~~]]	+

OCA at 06:00, 28 April 2021

2021-04-28T06:00:33Z

←Older revision		Revision as of 06:00, 28 April 2021
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	<StructureSection load='1obo' size='340' side='right'caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1obo' size='340' side='right'caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Anabaena_pcc7119 Anabaena pcc7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1OBO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anabaena_pcc7119 Anabaena pcc7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OBO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [~~http~~://pdbe.org/1obo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1obo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1obo ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [https://pdbe.org/1obo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [https://www.ebi.ac.uk/pdbsum/1obo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1obo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/FLAV_NOSS1 FLAV_NOSS1]] Low-potential electron donor to a number of redox enzymes.	+	[[https://www.uniprot.org/uniprot/FLAV_NOSS1 FLAV_NOSS1]] Low-potential electron donor to a number of redox enzymes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 06:54, 24 July 2019

2019-07-24T06:54:06Z

←Older revision		Revision as of 06:54, 24 July 2019
Line 1:		Line 1:

	==W57L flavodoxin from Anabaena==		==W57L flavodoxin from Anabaena==
-	<StructureSection load='1obo' size='340' side='right' caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>	+	<StructureSection load='1obo' size='340' side='right'caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_pcc7119 Anabaena pcc7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_pcc7119 Anabaena pcc7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBO FirstGlance]. <br>
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1obo" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1obo" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Flavodoxin 3D structures\|Flavodoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 34:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Anabaena pcc7119]]		[[Category: Anabaena pcc7119]]
		+	[[Category: Large Structures]]
	[[Category: Fernandez-Cabrera, C]]		[[Category: Fernandez-Cabrera, C]]
	[[Category: Irun, M P]]		[[Category: Irun, M P]]

OCA at 07:35, 7 February 2018

2018-02-07T07:35:00Z

←Older revision		Revision as of 07:35, 7 February 2018
Line 1:		Line 1:
-	==W57L ~~FLAVODOXIN FROM ANABAENA~~==	+
		+	==W57L flavodoxin from Anabaena==
	<StructureSection load='1obo' size='340' side='right' caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1obo' size='340' side='right' caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [http://pdbe.org/1obo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [http://www.ebi.ac.uk/pdbsum/1obo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [http://pdbe.org/1obo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [http://www.ebi.ac.uk/pdbsum/1obo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1obo ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/1obo_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/1obo_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1obo" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1obo" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Flavodoxin\|Flavodoxin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 05:13, 9 February 2016

2016-02-09T05:13:06Z

←Older revision		Revision as of 05:13, 9 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1obo ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 18:58, 10 September 2015

2015-09-10T18:58:01Z

←Older revision		Revision as of 18:58, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1obo' size='340' side='right' caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>		<StructureSection load='1obo' size='340' side='right' caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Anabaena_sp.~~ Anabaena ~~sp.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_pcc7119 Anabaena pcc7119]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [http://www.ebi.ac.uk/pdbsum/1obo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [http://pdbe.org/1obo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [http://www.ebi.ac.uk/pdbsum/1obo PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~FLAV_ANASP FLAV_ANASP~~]] Low-potential electron donor to a number of redox enzymes.	+	[[http://www.uniprot.org/uniprot/FLAV_NOSS1 FLAV_NOSS1]] Low-potential electron donor to a number of redox enzymes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1obo" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anabaena sp]]	+	[[Category: Anabaena pcc7119]]
	[[Category: Fernandez-Cabrera, C]]		[[Category: Fernandez-Cabrera, C]]
	[[Category: Irun, M P]]		[[Category: Irun, M P]]

OCA at 04:40, 25 December 2014

2014-12-25T04:40:25Z

←Older revision		Revision as of 04:40, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [http://www.ebi.ac.uk/pdbsum/1obo PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [http://www.ebi.ac.uk/pdbsum/1obo PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FLAV_ANASP FLAV_ANASP]] Low-potential electron donor to a number of redox enzymes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Anabaena sp.]]	+	[[Category: Anabaena sp]]
-	[[Category: Fernandez-Cabrera, C.]]	+	[[Category: Fernandez-Cabrera, C]]
-	[[Category: Irun, M P.]]	+	[[Category: Irun, M P]]
-	[[Category: Ramon, A.]]	+	[[Category: Ramon, A]]
-	[[Category: Romero, A.]]	+	[[Category: Romero, A]]
-	[[Category: Sancho, J.]]	+	[[Category: Sancho, J]]
	[[Category: Electron transfer]]		[[Category: Electron transfer]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]

OCA at 15:16, 28 September 2014

2014-09-28T15:16:49Z

←Older revision		Revision as of 15:16, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1obo.~~png~~\|~~left~~\|200px]]	+	==W57L FLAVODOXIN FROM ANABAENA==
		+	<StructureSection load='1obo' size='340' side='right' caption='[[1obo]], [[Resolution\|resolution]] 1.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1obo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1OBO FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dx9\|1dx9]], [[1flv\|1flv]], [[1ftg\|1ftg]], [[1obv\|1obv]], [[1qhe\|1qhe]], [[1rcf\|1rcf]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1obo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1obo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1obo RCSB], [http://www.ebi.ac.uk/pdbsum/1obo PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ob/1obo_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Molecular recognition begins when two molecules approach and establish interactions of certain strength. The mechanisms of molecular recognition reactions between biological molecules are not well known, and few systems have been analyzed in detail. We investigate here the reaction between an apoprotein and its physiological cofactor (apoflavodoxin and flavin mononucleotide) that binds reversibly to form a non-covalent complex (flavodoxin) involved in electron transfer reactions. We have analyzed the fast binding reactions between the FMN cofactor (and shorter analogs) and wild type (and nine mutant apoflavodoxins where residues interacting with FMN in the final complex have been replaced). The x-ray structures of two such mutants are reported that show the mutations are well tolerated by the protein. From the calculated microscopic binding rate constants we have performed a Phi analysis of the transition state of complex formation that indicates that the binding starts by interaction of the isoalloxazine-fused rings in FMN with residues of its hydrophobic binding site. In contrast, the phosphate in FMN, known to contribute most to the affinity of the final holoflavodoxin complex, is not bound in the transition state complex. Both the effects of ionic strength and of phosphate concentration on the wild type complex rate constant agree with this scenario. As suggested previously by nmr data, it seems that the isoalloxazine-binding site may be substantially open in solution. Interestingly, although FMN is a charged molecule, electrostatic interactions seem not to play a role in directing the binding, unlike what has been reported for other biological complexes. The binding can thus be best described as a hydrophobic encounter at an open binding site.

-	~~{{STRUCTURE_1obo\| PDB=1obo \| SCENE= }}~~	+	How FMN binds to anabaena apoflavodoxin: a hydrophobic encounter at an open binding site.,Lostao A, Daoudi F, Irun MP, Ramon A, Fernandez-Cabrera C, Romero A, Sancho J J Biol Chem. 2003 Jun 27;278(26):24053-61. Epub 2003 Apr 7. PMID:12682068<ref>PMID:12682068</ref>

-	~~===W57L FLAVODOXIN FROM ANABAENA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_12682068}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1obo]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Anabaena_sp~~. ~~Anabaena sp.]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA].~~	+

	==See Also==		==See Also==
	*[[Flavodoxin\|Flavodoxin]]		*[[Flavodoxin\|Flavodoxin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:012682068<~~/~~ref~~><~~ref group="xtra">PMID:008599758</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Anabaena sp.]]		[[Category: Anabaena sp.]]
	[[Category: Fernandez-Cabrera, C.]]		[[Category: Fernandez-Cabrera, C.]]

OCA at 12:45, 20 October 2012

2012-10-20T12:45:44Z

←Older revision		Revision as of 12:45, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1obo]] is a 2 chain structure ~~of [[Flavodoxin]]~~ with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA].	+	[[1obo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OBO OCA].

	==See Also==		==See Also==

OCA at 09:48, 26 July 2012

2012-07-26T09:48:22Z

←Older revision		Revision as of 09:48, 26 July 2012
Line 1:		Line 1:
	[[Image:1obo.png\|left\|200px]]		[[Image:1obo.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1obo", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1obo\| PDB=1obo \| SCENE= }}		{{STRUCTURE_1obo\| PDB=1obo \| SCENE= }}

	===W57L FLAVODOXIN FROM ANABAENA===		===W57L FLAVODOXIN FROM ANABAENA===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_12682068}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 12682068 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_12682068}}		{{ABSTRACT_PUBMED_12682068}}

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	==See Also==		==See Also==
-	*[[Flavodoxin]]	+	*[[Flavodoxin\|Flavodoxin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~12682068~~</ref><ref group="xtra">PMID:~~8599758~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:012682068</ref><ref group="xtra">PMID:008599758</ref><references group="xtra"/>
	[[Category: Anabaena sp.]]		[[Category: Anabaena sp.]]
	[[Category: Fernandez-Cabrera, C.]]		[[Category: Fernandez-Cabrera, C.]]