1q4r - Revision history

OCA at 06:01, 17 April 2024

2024-04-17T06:01:09Z

←Older revision		Revision as of 06:01, 17 April 2024
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	<StructureSection load='1q4r' size='340' side='right'caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1q4r' size='340' side='right'caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[1nwj\|1nwj]]~~</~~div~~>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [https://pdbe.org/1q4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [https://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q4r ProSAT], [https://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [~~http~~://pdbe.org/1q4r PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1q4r ProSAT], [~~http~~://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/POP3_ARATH POP3_ARATH]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Arath]]
-	[[Category: Large Structures]]
-	[[Category: Bingman, C A]]
-	[[Category: Structural genomic]]
-	[[Category: Johnson, K A]]
-	[[Category: Phillips, G N]]
-	[[Category: Smith, D W]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: ~~Cesg~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~PSI, Protein structure initiative~~]]	+	[[Category: Bingman CA]]
-	[[Category: ~~Unknown function~~]]	+	[[Category: Johnson KA]]
		+	[[Category: Phillips Jr GN]]
		+	[[Category: Smith DW]]

OCA at 07:43, 9 December 2020

2020-12-09T07:43:16Z

←Older revision		Revision as of 07:43, 9 December 2020
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	==Gene Product of At3g17210 from Arabidopsis Thaliana==		==Gene Product of At3g17210 from Arabidopsis Thaliana==
-	<StructureSection load='1q4r' size='340' side='right' caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='1q4r' size='340' side='right'caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1nwj\|1nwj]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1nwj\|1nwj]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://pdbe.org/1q4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q4r ProSAT], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://pdbe.org/1q4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q4r ProSAT], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 14:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q4/1q4r_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q4/1q4r_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Arath]]		[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 10:20, 12 October 2017

2017-10-12T10:20:23Z

←Older revision		Revision as of 10:20, 12 October 2017
Line 1:		Line 1:
		+
	==Gene Product of At3g17210 from Arabidopsis Thaliana==		==Gene Product of At3g17210 from Arabidopsis Thaliana==
	<StructureSection load='1q4r' size='340' side='right' caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1q4r' size='340' side='right' caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 7:		Line 8:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1nwj\|1nwj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1nwj\|1nwj]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://pdbe.org/1q4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://pdbe.org/1q4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1q4r ProSAT], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 17:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q4r ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 00:24, 12 September 2015

2015-09-12T00:24:06Z

←Older revision		Revision as of 00:24, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1q4r' size='340' side='right' caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1q4r' size='340' side='right' caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arabidopsis_thaliana Arabidopsis thaliana~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1nwj\|1nwj]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1nwj\|1nwj]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ~~Arabidopsis thaliana~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://pdbe.org/1q4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arabidopsis thaliana~~]]	+	[[Category: Arath]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
Line 27:		Line 27:
	[[Category: Phillips, G N]]		[[Category: Phillips, G N]]
	[[Category: Smith, D W]]		[[Category: Smith, D W]]
		+	[[Category: Arabidopsis thaliana]]
	[[Category: Cesg]]		[[Category: Cesg]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 21:22, 25 December 2014

2014-12-25T21:22:44Z

←Older revision		Revision as of 21:22, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>		<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1nwj\|1nwj]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1nwj\|1nwj]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Bingman, C A.]]	+	[[Category: Bingman, C A]]
-	[[Category: ~~CESG, Center for Eukaryotic~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Johnson, K A.]]	+	[[Category: Johnson, K A]]
-	[[Category: Phillips, G N.]]	+	[[Category: Phillips, G N]]
-	[[Category: Smith, D W~~.]]~~	+	[[Category: Smith, D W]]
-	~~[[Category: Arabidopsis thaliana]]~~	+
-	~~[[Category: Center for eukaryotic structural genomic~~]]	+
	[[Category: Cesg]]		[[Category: Cesg]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 16:18, 29 September 2014

2014-09-29T16:18:46Z

←Older revision		Revision as of 16:18, 29 September 2014
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-	~~[[Image:1q4r.png\|left\|200px]]~~	+	==Gene Product of At3g17210 from Arabidopsis Thaliana==
-		+	<StructureSection load='1q4r' size='340' side='right' caption='[[1q4r]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~{{STRUCTURE_1q4r\| PDB=1q4r \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Q4R FirstGlance]. <br>
-	===Gene Product of At3g17210 from Arabidopsis Thaliana===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1nwj\|1nwj]]</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At3g17210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1q4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q4r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1q4r RCSB], [http://www.ebi.ac.uk/pdbsum/1q4r PDBsum], [http://www.topsan.org/Proteins/CESG/1q4r TOPSAN]</span></td></tr>
-		+	<table>
-	==~~Reference~~==	+	== Evolutionary Conservation ==
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~015326607~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q4/1q4r_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Bingman, C A.]]		[[Category: Bingman, C A.]]

OCA: Protected "1q4r" [edit=sysop:move=sysop]

2013-01-02T09:48:33Z

Protected "1q4r" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:48, 2 January 2013

OCA at 09:48, 2 January 2013

2013-01-02T09:48:29Z

←Older revision		Revision as of 09:48, 2 January 2013
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-	{{Seed}}
	[[Image:1q4r.png\|left\|200px]]		[[Image:1q4r.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1q4r", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1q4r\| PDB=1q4r \| SCENE= }}		{{STRUCTURE_1q4r\| PDB=1q4r \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1Q4R~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA].	+	[[1q4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15326607~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015326607</ref><references group="xtra"/>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Bingman, C A.]]		[[Category: Bingman, C A.]]
	[[Category: CESG, Center for Eukaryotic Structural Genomics.]]		[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
	[[Category: Johnson, K A.]]		[[Category: Johnson, K A.]]
-	[[Category: ~~Jr.~~, G N~~.Phillips~~.]]	+	[[Category: Phillips, G N.]]
	[[Category: Smith, D W.]]		[[Category: Smith, D W.]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 08:00:21 2009''

OCA at 06:00, 18 February 2009

2009-02-18T06:00:22Z

←Older revision		Revision as of 06:00, 18 February 2009
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	==About this Structure==		==About this Structure==
-	1Q4R is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA].	+	1Q4R is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q4R OCA].

	==Reference==		==Reference==
-	Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana., Bingman CA, Johnson KA, Peterson FC, Frederick RO, Zhao Q, Thao S, Fox BG, Volkman BF, Jeon WB, Smith DW, Newman CS, Ulrich EL, Hegeman A, Sussman MR, Markley JL, Phillips GN Jr, Proteins. 2004 Oct 1;57(1):218-20. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15326607 15326607]~~	+	<ref group="xtra">PMID:15326607</ref><references group="xtra"/>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Single protein]]
	[[Category: Bingman, C A.]]		[[Category: Bingman, C A.]]
	[[Category: CESG, Center for Eukaryotic Structural Genomics.]]		[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
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	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Jul 6 12~~:01:~~56 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 08:00:21 2009''

OCA at 09:01, 6 July 2008

2008-07-06T09:01:56Z

←Older revision		Revision as of 09:01, 6 July 2008
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-	[[Image:1q4r.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1q4r.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1q4r\| PDB=1q4r \| SCENE= }}		{{STRUCTURE_1q4r\| PDB=1q4r \| SCENE= }}

-	~~'''~~Gene Product of At3g17210 from Arabidopsis Thaliana~~'''~~	+	===Gene Product of At3g17210 from Arabidopsis Thaliana===


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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May~~ ~~3 05~~:51:54 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 6 12:01:56 2008''