1ql3 - Revision history

OCA at 06:04, 17 April 2024

2024-04-17T06:04:22Z

←Older revision		Revision as of 06:04, 17 April 2024
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	<StructureSection load='1ql3' size='340' side='right'caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='1ql3' size='340' side='right'caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_17741 Atcc 17741~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=HEC:HEME+C'>HEC</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.4Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1ql4\|1ql4]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [https://pdbe.org/1ql3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ql3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ql3 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [https://pdbe.org/1ql3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ql3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ql3 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CY552_PARDE CY552_PARDE]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ql3 ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ql3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The crystal structure of the soluble domain of the membrane bound cytochrome c(552) (cytochrome c(552)') from Paracoccus denitrificans was determined using the multiwavelength anomalous diffraction technique and refined at 1.5 A resolution for the oxidized and at 1. 4 A for the reduced state. This is the first high-resolution crystal structure of a cytochrome c at low ionic strength in both redox states. The atomic model allowed for a detailed assessment of the structural properties including the secondary structure, the heme geometry and interactions, and the redox-coupled structural changes. In general, the structure has the same features as that of known eukaryotic cytochromes c. However, the surface properties are very different. Cytochrome c(552)' has a large strongly negatively charged surface part and a smaller positively charged area around the solvent-exposed heme atoms. One of the internal water molecules conserved in all structures of eukaryotic cytochromes c is also present in this bacterial cytochrome c. It contributes to the interactions between the side-chain of Arg36 and the heme propionate connected to pyrrole ring A. Reduction of the oxidized crystals does not influence the conformation of cytochrome c(552)' in contrast to eukaryotic cytochromes c. The oxidized cytochrome c(552)', especially the region of amino acid residues 40 to 56, appears to be more flexible than the reduced one.
-
-	Structure of the soluble domain of cytochrome c(552) from Paracoccus denitrificans in the oxidized and reduced states.,Harrenga A, Reincke B, Ruterjans H, Ludwig B, Michel H J Mol Biol. 2000 Jan 21;295(3):667-78. PMID:10623555<ref>PMID:10623555</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1ql3" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
-	*[[~~Nitrite~~ reductase ~~3D structures~~\|~~Nitrite~~ reductase ~~3D structures~~]]	+	*[[Cytochrome c nitrite reductase\|Cytochrome c nitrite reductase]]
-	~~== References ==~~	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 17741]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Harrenga, A]]	+	[[Category: Paracoccus denitrificans]]
-	[[Category: Ludwig, B]]	+	[[Category: Harrenga A]]
-	[[Category: Michel, H]]	+	[[Category: Ludwig B]]
-	[[Category: Reincke, B]]	+	[[Category: Michel H]]
-	[[Category: Rueterjans, H]]	+	[[Category: Reincke B]]
-	~~[[Category: Electron transfer]]~~	+	[[Category: Rueterjans H]]
-	~~[[Category: Reduced~~]]	+

OCA at 06:02, 28 April 2021

2021-04-28T06:02:57Z

←Older revision		Revision as of 06:02, 28 April 2021
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	<StructureSection load='1ql3' size='340' side='right'caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='1ql3' size='340' side='right'caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_17741 Atcc 17741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_17741 Atcc 17741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ql4\|1ql4]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ql4\|1ql4]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [~~http~~://pdbe.org/1ql3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ql3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ql3 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [https://pdbe.org/1ql3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [https://www.ebi.ac.uk/pdbsum/1ql3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ql3 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	==See Also==		==See Also==
-	*[[Nitrite reductase\|Nitrite reductase]]	+	*[[Nitrite reductase 3D structures\|Nitrite reductase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:59, 24 July 2019

2019-07-24T06:59:21Z

←Older revision		Revision as of 06:59, 24 July 2019
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	==Structure of the soluble domain of cytochrome c552 from Paracoccus denitrificans in the reduced state==		==Structure of the soluble domain of cytochrome c552 from Paracoccus denitrificans in the reduced state==
-	<StructureSection load='1ql3' size='340' side='right' caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>	+	<StructureSection load='1ql3' size='340' side='right'caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_17741 Atcc 17741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_17741 Atcc 17741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Atcc 17741]]		[[Category: Atcc 17741]]
		+	[[Category: Large Structures]]
	[[Category: Harrenga, A]]		[[Category: Harrenga, A]]
	[[Category: Ludwig, B]]		[[Category: Ludwig, B]]

OCA at 08:10, 28 February 2018

2018-02-28T08:10:06Z

←Older revision		Revision as of 08:10, 28 February 2018
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-	==~~STRUCTURE OF THE SOLUBLE DOMAIN OF CYTOCHROME C552 FROM PARACOCCUS DENITRIFICANS IN THE REDUCED STATE~~==	+
		+	==Structure of the soluble domain of cytochrome c552 from Paracoccus denitrificans in the reduced state==
	<StructureSection load='1ql3' size='340' side='right' caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='1ql3' size='340' side='right' caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
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	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ql4\|1ql4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ql4\|1ql4]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [http://pdbe.org/1ql3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ql3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [http://pdbe.org/1ql3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ql3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ql3 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/1ql3_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/1ql3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	==See Also==		==See Also==
-	*[[~~Nitric~~ reductase\|~~Nitric~~ reductase]]	+	*[[Nitrite reductase\|Nitrite reductase]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:43, 8 February 2016

2016-02-08T06:43:57Z

←Older revision		Revision as of 06:43, 8 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ql3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 08:55, 10 September 2015

2015-09-10T08:55:06Z

←Older revision		Revision as of 08:55, 10 September 2015
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	<StructureSection load='1ql3' size='340' side='right' caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>		<StructureSection load='1ql3' size='340' side='right' caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Paracoccus_denitrificans Paracoccus denitrificans~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_17741 Atcc 17741]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ql4\|1ql4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ql4\|1ql4]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ql3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [http://pdbe.org/1ql3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ql3 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1ql3" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Paracoccus denitrificans~~]]	+	[[Category: Atcc 17741]]
	[[Category: Harrenga, A]]		[[Category: Harrenga, A]]
	[[Category: Ludwig, B]]		[[Category: Ludwig, B]]

OCA at 07:27, 6 January 2015

2015-01-06T07:27:35Z

←Older revision		Revision as of 07:27, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ql4\|1ql4]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ql4\|1ql4]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ql3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ql3 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
-	[[Category: Harrenga, A.]]	+	[[Category: Harrenga, A]]
-	[[Category: Ludwig, B.]]	+	[[Category: Ludwig, B]]
-	[[Category: Michel, H.]]	+	[[Category: Michel, H]]
-	[[Category: Reincke, B.]]	+	[[Category: Reincke, B]]
-	[[Category: Rueterjans, H.]]	+	[[Category: Rueterjans, H]]
	[[Category: Electron transfer]]		[[Category: Electron transfer]]
	[[Category: Reduced]]		[[Category: Reduced]]

OCA at 23:34, 28 September 2014

2014-09-28T23:34:43Z

←Older revision		Revision as of 23:34, 28 September 2014
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-	[[~~Image:~~1ql3.~~png~~\|~~left~~\|200px]]	+	==STRUCTURE OF THE SOLUBLE DOMAIN OF CYTOCHROME C552 FROM PARACOCCUS DENITRIFICANS IN THE REDUCED STATE==
		+	<StructureSection load='1ql3' size='340' side='right' caption='[[1ql3]], [[Resolution\|resolution]] 1.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1ql3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1QL3 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ql4\|1ql4]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ql3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ql3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ql3 RCSB], [http://www.ebi.ac.uk/pdbsum/1ql3 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ql/1ql3_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of the soluble domain of the membrane bound cytochrome c(552) (cytochrome c(552)') from Paracoccus denitrificans was determined using the multiwavelength anomalous diffraction technique and refined at 1.5 A resolution for the oxidized and at 1. 4 A for the reduced state. This is the first high-resolution crystal structure of a cytochrome c at low ionic strength in both redox states. The atomic model allowed for a detailed assessment of the structural properties including the secondary structure, the heme geometry and interactions, and the redox-coupled structural changes. In general, the structure has the same features as that of known eukaryotic cytochromes c. However, the surface properties are very different. Cytochrome c(552)' has a large strongly negatively charged surface part and a smaller positively charged area around the solvent-exposed heme atoms. One of the internal water molecules conserved in all structures of eukaryotic cytochromes c is also present in this bacterial cytochrome c. It contributes to the interactions between the side-chain of Arg36 and the heme propionate connected to pyrrole ring A. Reduction of the oxidized crystals does not influence the conformation of cytochrome c(552)' in contrast to eukaryotic cytochromes c. The oxidized cytochrome c(552)', especially the region of amino acid residues 40 to 56, appears to be more flexible than the reduced one.

-	~~{{STRUCTURE_1ql3\| PDB=1ql3 \| SCENE= }}~~	+	Structure of the soluble domain of cytochrome c(552) from Paracoccus denitrificans in the oxidized and reduced states.,Harrenga A, Reincke B, Ruterjans H, Ludwig B, Michel H J Mol Biol. 2000 Jan 21;295(3):667-78. PMID:10623555<ref>PMID:10623555</ref>

-	~~===STRUCTURE OF THE SOLUBLE DOMAIN OF CYTOCHROME C552 FROM PARACOCCUS DENITRIFICANS IN THE REDUCED STATE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10623555}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1ql3]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA].~~	+

	==See Also==		==See Also==
-	*[[~~Cytochrome c~~\|~~Cytochrome c~~]]	+	*[[Nitric reductase\|Nitric reductase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:010623555<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Paracoccus denitrificans]]		[[Category: Paracoccus denitrificans]]
	[[Category: Harrenga, A.]]		[[Category: Harrenga, A.]]

OCA at 09:16, 20 October 2012

2012-10-20T09:16:54Z

←Older revision		Revision as of 09:16, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1ql3]] is a 4 chain structure ~~of [[Cytochrome c]]~~ with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA].	+	[[1ql3]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Paracoccus_denitrificans Paracoccus denitrificans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QL3 OCA].

	==See Also==		==See Also==

OCA: Protected "1ql3" [edit=sysop:move=sysop]

2012-07-25T22:19:53Z

Protected "1ql3" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:19, 25 July 2012