1r0j - Revision history

OCA at 07:23, 25 October 2023

2023-10-25T07:23:56Z

←Older revision		Revision as of 07:23, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='1r0j' size='340' side='right'caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1r0j' size='340' side='right'caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R0J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R0J FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [https://pdbe.org/1r0j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [https://www.ebi.ac.uk/pdbsum/1r0j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r0j ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [https://pdbe.org/1r0j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [https://www.ebi.ac.uk/pdbsum/1r0j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r0j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.	+	[https://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1r0j" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1r0j" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Rubredoxin 3D structures\|Rubredoxin 3D structures]]
		+	*[[Rubredoxin PDB structures\|Rubredoxin PDB structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Large Structures]]
-	[[Category: Cross, M]]
-	[[Category: Guss, J M]]
-	[[Category: Maher, M]]
-	[[Category: Wedd, A G]]
-	[[Category: Wilce, M C.J]]
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
-	[[Category: ~~Electron transport~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Iron-sulfur~~]]	+	[[Category: Cross M]]
-	[[Category: ~~Rubredoxin~~]]	+	[[Category: Guss JM]]
		+	[[Category: Maher M]]
		+	[[Category: Wedd AG]]
		+	[[Category: Wilce MCJ]]

OCA at 10:06, 15 September 2021

2021-09-15T10:06:56Z

←Older revision		Revision as of 10:06, 15 September 2021
Line 3:		Line 3:
	<StructureSection load='1r0j' size='340' side='right'caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1r0j' size='340' side='right'caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1R0J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R0J FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [~~http~~://pdbe.org/1r0j PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1r0j PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1r0j ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [https://pdbe.org/1r0j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [https://www.ebi.ac.uk/pdbsum/1r0j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r0j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.	+	[[https://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 11:15, 4 December 2019

2019-12-04T11:15:58Z

←Older revision		Revision as of 11:15, 4 December 2019
Line 1:		Line 1:

	==nickel-substituted rubredoxin==		==nickel-substituted rubredoxin==
-	<StructureSection load='1r0j' size='340' side='right' caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1r0j' size='340' side='right'caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R0J FirstGlance]. <br>		<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R0J FirstGlance]. <br>
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Cross, M]]		[[Category: Cross, M]]
	[[Category: Guss, J M]]		[[Category: Guss, J M]]

OCA at 07:41, 28 February 2018

2018-02-28T07:41:03Z

←Older revision		Revision as of 07:41, 28 February 2018
Line 1:		Line 1:
		+
	==nickel-substituted rubredoxin==		==nickel-substituted rubredoxin==
	<StructureSection load='1r0j' size='340' side='right' caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1r0j' size='340' side='right' caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [http://pdbe.org/1r0j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [http://www.ebi.ac.uk/pdbsum/1r0j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [http://pdbe.org/1r0j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [http://www.ebi.ac.uk/pdbsum/1r0j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1r0j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r0/1r0j_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r0/1r0j_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r0j ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 15:52, 11 September 2015

2015-09-11T15:52:03Z

←Older revision		Revision as of 15:52, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1r0j' size='340' side='right' caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1r0j' size='340' side='right' caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_pasteurianum Clostridium pasteurianum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R0J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_pasteurianus"_(winogradsky_1895)_lehmann_and_neumann_1907 "bacillus pasteurianus" (winogradsky 1895) lehmann and neumann 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R0J FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [http://www.ebi.ac.uk/pdbsum/1r0j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [http://pdbe.org/1r0j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [http://www.ebi.ac.uk/pdbsum/1r0j PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1r0j" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Clostridium pasteurianum]]
	[[Category: Cross, M]]		[[Category: Cross, M]]
	[[Category: Guss, J M]]		[[Category: Guss, J M]]
Line 37:		Line 37:
	[[Category: Wedd, A G]]		[[Category: Wedd, A G]]
	[[Category: Wilce, M C.J]]		[[Category: Wilce, M C.J]]
		+	[[Category: Clostridium pasteurianum]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Iron-sulfur]]		[[Category: Iron-sulfur]]
	[[Category: Rubredoxin]]		[[Category: Rubredoxin]]

OCA at 18:38, 25 December 2014

2014-12-25T18:38:00Z

←Older revision		Revision as of 18:38, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R0J FirstGlance]. <br>		<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R0J FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [http://www.ebi.ac.uk/pdbsum/1r0j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [http://www.ebi.ac.uk/pdbsum/1r0j PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RUBR_CLOPA RUBR_CLOPA]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
-	[[Category: Cross, M.]]	+	[[Category: Cross, M]]
-	[[Category: Guss, J M.]]	+	[[Category: Guss, J M]]
-	[[Category: Maher, M.]]	+	[[Category: Maher, M]]
-	[[Category: Wedd, A G.]]	+	[[Category: Wedd, A G]]
-	[[Category: Wilce, M C.J~~.]]~~	+	[[Category: Wilce, M C.J]]
-	~~[[Category: Clostridium pasteurianum~~]]	+
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Iron-sulfur]]		[[Category: Iron-sulfur]]
	[[Category: Rubredoxin]]		[[Category: Rubredoxin]]

OCA at 17:19, 29 September 2014

2014-09-29T17:19:32Z

←Older revision		Revision as of 17:19, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1r0j.~~png~~\|~~left~~\|200px]]	+	==nickel-substituted rubredoxin==
		+	<StructureSection load='1r0j' size='340' side='right' caption='[[1r0j]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1r0j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R0J FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1r0f\|1r0f]], [[1r0g\|1r0g]], [[1r0h\|1r0h]], [[1r0i\|1r0i]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r0j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1r0j RCSB], [http://www.ebi.ac.uk/pdbsum/1r0j PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r0/1r0j_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Five different metal-substituted forms of Clostridium pasteurianum rubredoxin have been prepared and crystallized. The single Fe atom present in the Fe(S-Cys)(4) site of the native form of the protein was exchanged in turn for Co, Ni, Ga, Cd and Hg. All five forms of rubredoxin crystallized in space group R3 and were isomorphous with the native protein. The Co-, Ni- and Ga-substituted proteins exhibited metal sites with geometries similar to that of the Fe form (effective D(2d) local symmetry), as did the Cd and Hg proteins, but with a significant expansion of the metal-sulfur bond lengths. A knowledge of these structures contributes to a molecular understanding of the function of this simple iron-sulfur electron-transport protein.

-	~~{{STRUCTURE_1r0j\| PDB=1r0j \| SCENE= }}~~	+	Metal-substituted derivatives of the rubredoxin from Clostridium pasteurianum.,Maher M, Cross M, Wilce MC, Guss JM, Wedd AG Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):298-303. Epub 2004, Jan 23. PMID:14747706<ref>PMID:14747706</ref>

-	~~===nickel-substituted rubredoxin===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_14747706}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1r0j]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:014747706<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
	[[Category: Cross, M.]]		[[Category: Cross, M.]]

OCA: Protected "1r0j" [edit=sysop:move=sysop]

2013-01-04T10:08:20Z

Protected "1r0j" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:08, 4 January 2013

OCA at 10:08, 4 January 2013

2013-01-04T10:08:15Z

←Older revision		Revision as of 10:08, 4 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1r0j.png\|left\|200px]]		[[Image:1r0j.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1r0j", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1r0j\| PDB=1r0j \| SCENE= }}		{{STRUCTURE_1r0j\| PDB=1r0j \| SCENE= }}

	===nickel-substituted rubredoxin===		===nickel-substituted rubredoxin===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_14747706}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 14747706 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_14747706}}		{{ABSTRACT_PUBMED_14747706}}

	==About this Structure==		==About this Structure==
-	~~1R0J~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA].	+	[[1r0j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14747706~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014747706</ref><references group="xtra"/>
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
	[[Category: Cross, M.]]		[[Category: Cross, M.]]
Line 31:		Line 19:
	[[Category: Wilce, M C.J.]]		[[Category: Wilce, M C.J.]]
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
		+	[[Category: Electron transport]]
	[[Category: Iron-sulfur]]		[[Category: Iron-sulfur]]
	[[Category: Rubredoxin]]		[[Category: Rubredoxin]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:44:13 2009''

OCA at 00:44, 18 February 2009

2009-02-18T00:44:15Z

←Older revision		Revision as of 00:44, 18 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1R0J is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA].	+	1R0J is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_pasteurianum Clostridium pasteurianum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R0J OCA].

	==Reference==		==Reference==
-	Metal-substituted derivatives of the rubredoxin from Clostridium pasteurianum., Maher M, Cross M, Wilce MC, Guss JM, Wedd AG, Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):298-303. Epub 2004, Jan 23. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/14747706 14747706]~~	+	<ref group="xtra">PMID:14747706</ref><references group="xtra"/>
	[[Category: Clostridium pasteurianum]]		[[Category: Clostridium pasteurianum]]
-	[[Category: Single protein]]
	[[Category: Cross, M.]]		[[Category: Cross, M.]]
	[[Category: Guss, J M.]]		[[Category: Guss, J M.]]
Line 35:		Line 34:
	[[Category: Rubredoxin]]		[[Category: Rubredoxin]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 09~~:21:~~17 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 02:44:13 2009''