1r91 - Revision history

OCA at 10:09, 15 September 2021

2021-09-15T10:09:53Z

←Older revision		Revision as of 10:09, 15 September 2021
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	<StructureSection load='1r91' size='340' side='right'caption='[[1r91]]' scene=''>		<StructureSection load='1r91' size='340' side='right'caption='[[1r91]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1R91 FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R91 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1r91 FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1r91 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1r91 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r91 FirstGlance], [https://www.ebi.ac.uk/pdbsum/1r91 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r91 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:48, 4 December 2019

2019-12-04T11:48:46Z

←Older revision		Revision as of 11:48, 4 December 2019
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	==3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP (1TYF)==		==3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP (1TYF)==
-	<StructureSection load='1r91' size='340' side='right' caption='[[1r91]]' scene=''>	+	<StructureSection load='1r91' size='340' side='right'caption='[[1r91]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R91 FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R91 FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Cai, Y]]		[[Category: Cai, Y]]
	[[Category: Friso, G]]		[[Category: Friso, G]]

OCA at 08:12, 28 February 2018

2018-02-28T08:12:29Z

←Older revision		Revision as of 08:12, 28 February 2018
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R91 FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R91 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r91 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r91 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r91 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r91 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1r91 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:46, 11 February 2016

2016-02-11T09:46:35Z

←Older revision		Revision as of 09:46, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP (1TYF)==		==3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP (1TYF)==
	<StructureSection load='1r91' size='340' side='right' caption='[[1r91]]' scene=''>		<StructureSection load='1r91' size='340' side='right' caption='[[1r91]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Cai, Y]]		[[Category: Cai, Y]]
	[[Category: Friso, G]]		[[Category: Friso, G]]

OCA at 21:16, 11 September 2015

2015-09-11T21:16:39Z

←Older revision		Revision as of 21:16, 11 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1r91" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 08:27, 6 January 2015

2015-01-06T08:27:13Z

←Older revision		Revision as of 08:27, 6 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R91 FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R91 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r91 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r91 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r91 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r91 PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 20:38, 28 September 2014

2014-09-28T20:38:50Z

←Older revision		Revision as of 20:38, 28 September 2014
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-	~~{{Theoretical_model}}~~	+	==3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP (1TYF)==
		+	<StructureSection load='1r91' size='340' side='right' caption='[[1r91]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1R91 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1r91 FirstGlance], [http://www.ebi.ac.uk/pdbsum/1r91 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Tetradecameric Clp protease core complexes in non-photosynthetic plastids of roots, flower petals, and in chloroplasts of leaves of Arabidopsis thaliana were purified based on native mass and isoelectric point and identified by mass spectrometry. The stoichiometry between the subunits was determined. The protease complex consisted of one to three copies of five different serine-type protease Clp proteins (ClpP1,3-6) and four non-proteolytic ClpR proteins (ClpR1-4). Three-dimensional homology modeling showed that the ClpP/R proteins fit well together in a tetradecameric complex and also indicated unique contributions for each protein. Lateral exit gates for proteolysis products are proposed. In addition, ClpS1,2, unique to land plants, tightly interacted with this core complex, with one copy of each per complex. The three-dimensional modeling show that they do fit well on the axial sites of the ClpPR cores. In contrast to plastids, plant mitochondria contained a single approximately 320-kDa homo-tetradecameric ClpP2 complex, without association of ClpR or ClpS proteins. It is surprising that the Clp core composition appears identical in all three plastid types, despite the remarkable differences in plastid proteome composition. This suggests that regulation of plastid proteolysis by the Clp machinery is not through differential regulation of ClpP/R/S gene expression, but rather through substrate recognition mechanisms and regulated interaction of chaperone-like molecules (ClpS1,2 and others) to the ClpP/R core.

-	~~[[Image~~:~~1r91~~.~~png\|left\|200px]]~~	+	Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications.,Peltier JB, Ripoll DR, Friso G, Rudella A, Cai Y, Ytterberg J, Giacomelli L, Pillardy J, van Wijk KJ J Biol Chem. 2004 Feb 6;279(6):4768-81. Epub 2003 Oct 30. PMID:14593120<ref>PMID:14593120</ref>

-	~~{{STRUCTURE_1r91\| PDB=1r91 \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~===3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA~~, ~~USING THE CRYSTAL STRUCTURE OF E~~. ~~COLI CLPP (1TYF)===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_14593120}}~~	+	__TOC__
-		+	</StructureSection>
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:014593120<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Cai, Y]]		[[Category: Cai, Y]]
	[[Category: Friso, G]]		[[Category: Friso, G]]

OCA: Protected "1r91" [edit=sysop:move=sysop]

2012-10-21T10:02:54Z

Protected "1r91" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:02, 21 October 2012

OCA at 10:02, 21 October 2012

2012-10-21T10:02:49Z

←Older revision		Revision as of 10:02, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1r91.png\|left\|200px]]		[[Image:1r91.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1r91", creates the "Structure Box" on the page.
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	{{STRUCTURE_1r91\| PDB=1r91 \| SCENE= }}		{{STRUCTURE_1r91\| PDB=1r91 \| SCENE= }}

	===3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP (1TYF)===		===3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP (1TYF)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_14593120}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 14593120 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_14593120}}		{{ABSTRACT_PUBMED_14593120}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R91 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14593120~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014593120</ref><references group="xtra"/>
	[[Category: Cai, Y]]		[[Category: Cai, Y]]
	[[Category: Friso, G]]		[[Category: Friso, G]]
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	[[Category: Van Wijk, K J]]		[[Category: Van Wijk, K J]]
	[[Category: Ytterberg, J]]		[[Category: Ytterberg, J]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 09:27:30 2010''

OCA at 06:27, 8 April 2010

2010-04-08T06:27:31Z

←Older revision		Revision as of 06:27, 8 April 2010
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-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1r91.png\|left\|200px]]

-	The ~~entry 1R91 is a Theoretical Model titled '3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA~~, ~~USING THE CRYSTAL STRUCTURE OF E~~. ~~COLI CLPP~~ (~~1TYF~~)'.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1r91", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1r91\| PDB=1r91 \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===3D STRUCTURE PREDICTION OF CLPP4 PROTEASE FROM ARABIDOPSIS THALIANA, USING THE CRYSTAL STRUCTURE OF E. COLI CLPP (1TYF)===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30~~ 09:53:~~04 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_14593120}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 14593120 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_14593120}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R91 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:14593120</ref><references group="xtra"/>
		+	[[Category: Cai, Y]]
		+	[[Category: Friso, G]]
		+	[[Category: Giacomelli, L]]
		+	[[Category: Peltier, J B]]
		+	[[Category: Pillardy, J]]
		+	[[Category: Ripoll, D R]]
		+	[[Category: Rudella, A]]
		+	[[Category: Van Wijk, K J]]
		+	[[Category: Ytterberg, J]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 09:27:30 2010''