1rfj - Revision history

OCA at 13:29, 13 March 2024

2024-03-13T13:29:24Z

←Older revision		Revision as of 13:29, 13 March 2024
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	<StructureSection load='1rfj' size='340' side='right'caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1rfj' size='340' side='right'caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Potato Potato~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=MPD:(4S)-~~2~~-METHYL-2,4-PENTANEDIOL'>MPD</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Potato])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [https://pdbe.org/1rfj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [https://www.ebi.ac.uk/pdbsum/1rfj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rfj ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [~~http~~://pdbe.org/1rfj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1rfj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1rfj ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CALM5_SOLTU CALM5_SOLTU] Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rfj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rfj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The crystal structure of a potato calmodulin (PCM6) was solved by molecular replacement and refined to a crystallographic R factor of 22.8% (R(free) = 25.0%) using X-ray diffraction data in the resolution range 8.0-2.0 A. This is the first report of the three-dimensional structure of a plant Ca(2+)-calmodulin. PCM6 crystallizes in a crystal form that belongs to space group P2(1)2(1)2(1), which is different to that of most other calmodulin crystals. The main structural difference between PCM6 and the other calmodulins is in the central helix region and appears to be caused by crystal packing. The surface properties of PCM6 molecules were compared with those of animal calmodulins, which provided an explanation for the unique crystal-packing state of PCM6.
-
-	Structure of potato calmodulin PCM6: the first report of the three-dimensional structure of a plant calmodulin.,Yun CH, Bai J, Sun DY, Cui DF, Chang WR, Liang DC Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1214-9. Epub 2004, Jun 22. PMID:15213382<ref>PMID:15213382</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1rfj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Calmodulin 3D structures\|Calmodulin 3D structures]]		*[[Calmodulin 3D structures\|Calmodulin 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Potato~~]]	+	[[Category: Solanum tuberosum]]
-	[[Category: Chang~~, W R~~]]	+	[[Category: Chang WR]]
-	[[Category: Liang~~, D C~~]]	+	[[Category: Liang DC]]
-	[[Category: Yun~~, C H]]~~	+	[[Category: Yun CH]]
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: Pcm6]]~~	+
-	~~[[Category: Plant calmodulin~~]]	+

OCA at 13:25, 16 December 2020

2020-12-16T13:25:21Z

←Older revision		Revision as of 13:25, 16 December 2020
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	==Crystal Structure of Potato Calmodulin PCM6==		==Crystal Structure of Potato Calmodulin PCM6==
-	<StructureSection load='1rfj' size='340' side='right' caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1rfj' size='340' side='right'caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Potato])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Potato])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://pdbe.org/1rfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rfj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://pdbe.org/1rfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rfj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/1rfj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/1rfj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 28:		Line 28:
	</div>		</div>
	<div class="pdbe-citations 1rfj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1rfj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Calmodulin 3D structures\|Calmodulin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Potato]]		[[Category: Potato]]
	[[Category: Chang, W R]]		[[Category: Chang, W R]]

OCA at 11:42, 12 October 2017

2017-10-12T11:42:44Z

←Older revision		Revision as of 11:42, 12 October 2017
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		+
	==Crystal Structure of Potato Calmodulin PCM6==		==Crystal Structure of Potato Calmodulin PCM6==
	<StructureSection load='1rfj' size='340' side='right' caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1rfj' size='340' side='right' caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Potato])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Potato])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://pdbe.org/1rfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://pdbe.org/1rfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1rfj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</div>		</div>
	<div class="pdbe-citations 1rfj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1rfj" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Calmodulin\|Calmodulin]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 04:47, 8 February 2016

2016-02-08T04:47:48Z

←Older revision		Revision as of 04:47, 8 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rfj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 08:01, 10 September 2015

2015-09-10T08:01:15Z

←Older revision		Revision as of 08:01, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1rfj' size='340' side='right' caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1rfj' size='340' side='right' caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Solanum_tuberosum Solanum tuberosum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 ~~Solanum tuberosum~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Potato])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://pdbe.org/1rfj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1rfj" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Solanum tuberosum~~]]	+	[[Category: Potato]]
	[[Category: Chang, W R]]		[[Category: Chang, W R]]
	[[Category: Liang, D C]]		[[Category: Liang, D C]]

OCA at 08:17, 6 January 2015

2015-01-06T08:17:53Z

←Older revision		Revision as of 08:17, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Solanum tuberosum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Solanum tuberosum])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
-	[[Category: Chang, W R.]]	+	[[Category: Chang, W R]]
-	[[Category: Liang, D C.]]	+	[[Category: Liang, D C]]
-	[[Category: Yun, C H.]]	+	[[Category: Yun, C H]]
	[[Category: Metal binding protein]]		[[Category: Metal binding protein]]
	[[Category: Pcm6]]		[[Category: Pcm6]]
	[[Category: Plant calmodulin]]		[[Category: Plant calmodulin]]

OCA at 22:59, 28 September 2014

2014-09-28T22:59:47Z

←Older revision		Revision as of 22:59, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1rfj.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of Potato Calmodulin PCM6==
		+	<StructureSection load='1rfj' size='340' side='right' caption='[[1rfj]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1rfj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1RFJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[3cln\|3cln]], [[4cln\|4cln]], [[1osa\|1osa]], [[1exr\|1exr]], [[1clm\|1clm]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PCM6 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4113 Solanum tuberosum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1rfj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rfj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1rfj RCSB], [http://www.ebi.ac.uk/pdbsum/1rfj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rf/1rfj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of a potato calmodulin (PCM6) was solved by molecular replacement and refined to a crystallographic R factor of 22.8% (R(free) = 25.0%) using X-ray diffraction data in the resolution range 8.0-2.0 A. This is the first report of the three-dimensional structure of a plant Ca(2+)-calmodulin. PCM6 crystallizes in a crystal form that belongs to space group P2(1)2(1)2(1), which is different to that of most other calmodulin crystals. The main structural difference between PCM6 and the other calmodulins is in the central helix region and appears to be caused by crystal packing. The surface properties of PCM6 molecules were compared with those of animal calmodulins, which provided an explanation for the unique crystal-packing state of PCM6.

-	~~{{STRUCTURE_1rfj\| PDB=1rfj \| SCENE= }}~~	+	Structure of potato calmodulin PCM6: the first report of the three-dimensional structure of a plant calmodulin.,Yun CH, Bai J, Sun DY, Cui DF, Chang WR, Liang DC Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1214-9. Epub 2004, Jun 22. PMID:15213382<ref>PMID:15213382</ref>

-	~~===Crystal Structure~~ of ~~Potato Calmodulin PCM6===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15213382}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1rfj]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Solanum_tuberosum Solanum tuberosum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA].~~	+

	==See Also==		==See Also==
	*[[Calmodulin\|Calmodulin]]		*[[Calmodulin\|Calmodulin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015213382<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
	[[Category: Chang, W R.]]		[[Category: Chang, W R.]]

OCA at 08:58, 20 October 2012

2012-10-20T08:58:06Z

←Older revision		Revision as of 08:58, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1rfj]] is a 1 chain structure ~~of [[Calmodulin]]~~ with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA].	+	[[1rfj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RFJ OCA].

	==See Also==		==See Also==

OCA at 21:21, 25 July 2012

2012-07-25T21:21:20Z

←Older revision		Revision as of 21:21, 25 July 2012
Line 1:		Line 1:
	[[Image:1rfj.png\|left\|200px]]		[[Image:1rfj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1rfj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1rfj\| PDB=1rfj \| SCENE= }}		{{STRUCTURE_1rfj\| PDB=1rfj \| SCENE= }}

	===Crystal Structure of Potato Calmodulin PCM6===		===Crystal Structure of Potato Calmodulin PCM6===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15213382}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15213382 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15213382}}		{{ABSTRACT_PUBMED_15213382}}

Line 22:		Line 11:

	==See Also==		==See Also==
-	*[[Calmodulin]]	+	*[[Calmodulin\|Calmodulin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15213382~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015213382</ref><references group="xtra"/>
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
	[[Category: Chang, W R.]]		[[Category: Chang, W R.]]
	[[Category: Liang, D C.]]		[[Category: Liang, D C.]]
	[[Category: Yun, C H.]]		[[Category: Yun, C H.]]
-	[[Category: Crystal structure]]
	[[Category: Metal binding protein]]		[[Category: Metal binding protein]]
	[[Category: Pcm6]]		[[Category: Pcm6]]
	[[Category: Plant calmodulin]]		[[Category: Plant calmodulin]]

OCA: Protected "1rfj" [edit=sysop:move=sysop]

2010-12-27T01:48:47Z

Protected "1rfj" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:48, 27 December 2010