1tav - Revision history

OCA at 09:24, 29 September 2021

2021-09-29T09:24:49Z

←Older revision		Revision as of 09:24, 29 September 2021
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	<StructureSection load='1tav' size='340' side='right'caption='[[1tav]]' scene=''>		<StructureSection load='1tav' size='340' side='right'caption='[[1tav]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TAV FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TAV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tav FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1tav PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tav ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tav FirstGlance], [https://www.ebi.ac.uk/pdbsum/1tav PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tav ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 13:58, 18 December 2019

2019-12-18T13:58:18Z

←Older revision		Revision as of 13:58, 18 December 2019
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	==LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)==		==LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)==
-	<StructureSection load='1tav' size='340' side='right' caption='[[1tav]]' scene=''>	+	<StructureSection load='1tav' size='340' side='right'caption='[[1tav]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TAV FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TAV FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Aikens, C L]]		[[Category: Aikens, C L]]
	[[Category: Laederach, A T]]		[[Category: Laederach, A T]]
	[[Category: Reilly, P J]]		[[Category: Reilly, P J]]

OCA at 07:41, 14 March 2018

2018-03-14T07:41:43Z

←Older revision		Revision as of 07:41, 14 March 2018
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TAV FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TAV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tav FirstGlance], [http://www.ebi.ac.uk/pdbsum/1tav PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tav FirstGlance], [http://www.ebi.ac.uk/pdbsum/1tav PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tav ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:55, 11 February 2016

2016-02-11T09:55:20Z

←Older revision		Revision as of 09:55, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)==		==LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)==
	<StructureSection load='1tav' size='340' side='right' caption='[[1tav]]' scene=''>		<StructureSection load='1tav' size='340' side='right' caption='[[1tav]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Aikens, C L]]		[[Category: Aikens, C L]]
	[[Category: Laederach, A T]]		[[Category: Laederach, A T]]
	[[Category: Reilly, P J]]		[[Category: Reilly, P J]]

OCA at 07:43, 11 September 2015

2015-09-11T07:43:28Z

←Older revision		Revision as of 07:43, 11 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1tav" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:01, 6 January 2015

2015-01-06T07:01:28Z

←Older revision		Revision as of 07:01, 6 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TAV FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TAV FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tav FirstGlance], [http://www.ebi.ac.uk/pdbsum/1tav PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tav FirstGlance], [http://www.ebi.ac.uk/pdbsum/1tav PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 22:21, 28 September 2014

2014-09-28T22:21:45Z

←Older revision		Revision as of 22:21, 28 September 2014
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-	~~{{Theoretical_model}}~~	+	==LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)==
		+	<StructureSection load='1tav' size='340' side='right' caption='[[1tav]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TAV FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tav FirstGlance], [http://www.ebi.ac.uk/pdbsum/1tav PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The automated docking program AutoDock was used to dock nine phosphatidic acids (PAs), six phosphatidylcholines, five phosphatidylethanolamines, four phosphatidylglycerols, one phosphatidylinositol and two phosphatidylserines, which have two identical saturated fatty acid residues with an even numbers of carbon atoms, onto the active site of Streptomyces sp. PMF phospholipase D (PLD). Two PAs with one double bond on the fatty acid chain linked to the C2 of the glycerol residue were also docked. In general, binding energies become progressively more negative as fatty acid residues become longer. When these residues are of sufficient length, one is coiled against a hydrophobic cliff in a well that also holds the glycerol and phosphate residues and the head group, while the other generally is bound by a hydrophobic surface outside the well. Phosphatidylcholines have the only head group that is firmly bound by the active site, giving a possible structural explanation for the low selectivity of Streptomyces PLD for other phospholipid substrates.

-	~~[[Image~~:~~1tav~~.~~png\|left\|200px]]~~	+	Visualizing complexes of phospholipids with Streptomyces phospholipase D by automated docking.,Aikens CL, Laederach A, Reilly PJ Proteins. 2004 Oct 1;57(1):27-35. PMID:15326592<ref>PMID:15326592</ref>

-	~~{{STRUCTURE_1tav\| PDB=1tav \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_15326592}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:015326592<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Aikens, C L]]		[[Category: Aikens, C L]]
	[[Category: Laederach, A T]]		[[Category: Laederach, A T]]
	[[Category: Reilly, P J]]		[[Category: Reilly, P J]]

OCA: Protected "1tav" [edit=sysop:move=sysop]

2012-10-21T08:58:47Z

Protected "1tav" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:58, 21 October 2012

OCA at 08:58, 21 October 2012

2012-10-21T08:58:42Z

←Older revision		Revision as of 08:58, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1tav.png\|left\|200px]]		[[Image:1tav.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1tav", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1tav\| PDB=1tav \| SCENE= }}		{{STRUCTURE_1tav\| PDB=1tav \| SCENE= }}

	===LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)===		===LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15326592}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15326592 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15326592}}		{{ABSTRACT_PUBMED_15326592}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TAV OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15326592~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015326592</ref><references group="xtra"/>
	[[Category: Aikens, C L]]		[[Category: Aikens, C L]]
	[[Category: Laederach, A T]]		[[Category: Laederach, A T]]
	[[Category: Reilly, P J]]		[[Category: Reilly, P J]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:23:05 2010''

OCA at 04:23, 8 April 2010

2010-04-08T04:23:06Z

←Older revision		Revision as of 04:23, 8 April 2010
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-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1tav.png\|left\|200px]]

-	The ~~entry 1TAV is a Theoretical Model titled 'Ligand P2I complexed with Phospholipase D~~ (~~1F0I~~)'.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1tav", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1tav\| PDB=1tav \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===LIGAND P2I COMPLEXED WITH PHOSPHOLIPASE D (1F0I)===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:53:~~41 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_15326592}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 15326592 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_15326592}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TAV OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:15326592</ref><references group="xtra"/>
		+	[[Category: Aikens, C L]]
		+	[[Category: Laederach, A T]]
		+	[[Category: Reilly, P J]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 07:23:05 2010''