1tqp - Revision history

OCA at 06:33, 23 August 2023

2023-08-23T06:33:11Z

←Older revision		Revision as of 06:33, 23 August 2023
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	<StructureSection load='1tqp' size='340' side='right'caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1tqp' size='340' side='right'caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arcfu Arcfu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1TQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_DSM_4304 Archaeoglobus fulgidus DSM 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TQP FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ATP:ADENOSINE~~-~~5-TRIPHOSPHATE'>ATP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[1tqi\|1tqi]], [[1tqm\|1tqm]]~~</~~div~~>~~</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [https://pdbe.org/1tqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [https://www.ebi.ac.uk/pdbsum/1tqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tqp ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [~~http~~://pdbe.org/1tqp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1tqp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1tqp ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RIO2_ARCFU RIO2_ARCFU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</div>		</div>
	<div class="pdbe-citations 1tqp" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1tqp" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Serine/threonine protein kinase 3D structures\|Serine/threonine protein kinase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arcfu~~]]	+	[[Category: Archaeoglobus fulgidus DSM 4304]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: LaRonde-LeBlanc, N]]	+	[[Category: LaRonde-LeBlanc N]]
-	[[Category: Wlodawer, A]]	+	[[Category: Wlodawer A]]
-	~~[[Category: Ribosome]]~~	+
-	~~[[Category: Serine kinase~~]]	+

OCA at 11:58, 24 December 2020

2020-12-24T11:58:21Z

←Older revision		Revision as of 11:58, 24 December 2020
Line 1:		Line 1:

	==Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to ATP==		==Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to ATP==
-	<StructureSection load='1tqp' size='340' side='right' caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='1tqp' size='340' side='right'caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1TQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1TQP FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tqi\|1tqi]], [[1tqm\|1tqm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1tqi\|1tqi]], [[1tqm\|1tqm]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://pdbe.org/1tqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tqp ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://pdbe.org/1tqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tqp ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: Arcfu]]		[[Category: Arcfu]]
		+	[[Category: Large Structures]]
	[[Category: LaRonde-LeBlanc, N]]		[[Category: LaRonde-LeBlanc, N]]
	[[Category: Wlodawer, A]]		[[Category: Wlodawer, A]]
	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Serine kinase]]		[[Category: Serine kinase]]

OCA at 08:24, 21 March 2018

2018-03-21T08:24:30Z

←Older revision		Revision as of 08:24, 21 March 2018
Line 1:		Line 1:
		+
	==Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to ATP==		==Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to ATP==
	<StructureSection load='1tqp' size='340' side='right' caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1tqp' size='340' side='right' caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 7:		Line 8:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tqi\|1tqi]], [[1tqm\|1tqm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tqi\|1tqi]], [[1tqm\|1tqm]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://pdbe.org/1tqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://pdbe.org/1tqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1tqp ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tq/1tqp_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tq/1tqp_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 16:16, 9 February 2016

2016-02-09T16:16:55Z

←Older revision		Revision as of 16:16, 9 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tqp ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:56, 10 September 2015

2015-09-10T23:56:44Z

←Older revision		Revision as of 23:56, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1tqp' size='340' side='right' caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1tqp' size='340' side='right' caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Archaeoglobus_fulgidus Archaeoglobus fulgidus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfu Arcfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TQP FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tqi\|1tqi]], [[1tqm\|1tqm]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tqi\|1tqi]], [[1tqm\|1tqm]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~2234 Archaeoglobus fulgidus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224325 ARCFU])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://pdbe.org/1tqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1tqp" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Archaeoglobus fulgidus~~]]	+	[[Category: Arcfu]]
	[[Category: LaRonde-LeBlanc, N]]		[[Category: LaRonde-LeBlanc, N]]
	[[Category: Wlodawer, A]]		[[Category: Wlodawer, A]]
	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Serine kinase]]		[[Category: Serine kinase]]

OCA at 12:17, 6 January 2015

2015-01-06T12:17:34Z

←Older revision		Revision as of 12:17, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TQP FirstGlance]. <br>		<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TQP FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tqi\|1tqi]], [[1tqm\|1tqm]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tqi\|1tqi]], [[1tqm\|1tqm]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 Archaeoglobus fulgidus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 Archaeoglobus fulgidus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Archaeoglobus fulgidus]]		[[Category: Archaeoglobus fulgidus]]
-	[[Category: LaRonde-LeBlanc, N.]]	+	[[Category: LaRonde-LeBlanc, N]]
-	[[Category: Wlodawer, A.]]	+	[[Category: Wlodawer, A]]
	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Serine kinase]]		[[Category: Serine kinase]]

OCA at 19:22, 29 September 2014

2014-09-29T19:22:21Z

←Older revision		Revision as of 19:22, 29 September 2014
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-	[[~~Image:~~1tqp.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to ATP==
		+	<StructureSection load='1tqp' size='340' side='right' caption='[[1tqp]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1tqp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1TQP FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1tqi\|1tqi]], [[1tqm\|1tqm]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIO2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 Archaeoglobus fulgidus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tqp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tqp RCSB], [http://www.ebi.ac.uk/pdbsum/1tqp PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tq/1tqp_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The RIO family of atypical serine/threonine kinases contains two subfamilies, Rio1 and Rio2, highly conserved from archaea to man. Both RIO proteins from Saccharomyces cerevisiae catalyze serine phosphorylation in vitro, and the presence of conserved catalytic residues is required for cell viability. The activity of Rio2 is necessary for rRNA cleavage in 40S ribosomal subunit maturation. We solved the X-ray crystal structure of Archaeoglobus fulgidus Rio2, with and without bound nucleotides, at 2.0 A resolution. The C-terminal RIO domain is indeed structurally homologous to protein kinases, although it differs from known serine kinases in ATP binding and lacks the regions important for substrate binding. Unexpectedly, the N-terminal Rio2-specific domain contains a winged helix fold, seen primarily in DNA-binding proteins. These discoveries have implications in determining the target and function of RIO proteins and define a distinct new family of protein kinases.

-	~~{{STRUCTURE_1tqp\| PDB=1tqp \| SCENE= }}~~	+	Crystal structure of A. fulgidus Rio2 defines a new family of serine protein kinases.,LaRonde-LeBlanc N, Wlodawer A Structure. 2004 Sep;12(9):1585-94. PMID:15341724<ref>PMID:15341724</ref>

-	~~===Crystal Structure~~ of A. ~~fulgidus Rio2 Serine Protein Kinase Bound to ATP===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15341724}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1tqp]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015341724<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Archaeoglobus fulgidus]]		[[Category: Archaeoglobus fulgidus]]
	[[Category: LaRonde-LeBlanc, N.]]		[[Category: LaRonde-LeBlanc, N.]]

OCA: Protected "1tqp" [edit=sysop:move=sysop]

2013-01-05T12:23:21Z

Protected "1tqp" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:23, 5 January 2013

OCA at 12:23, 5 January 2013

2013-01-05T12:23:17Z

←Older revision		Revision as of 12:23, 5 January 2013
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-	{{Seed}}
	[[Image:1tqp.png\|left\|200px]]		[[Image:1tqp.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1tqp\| PDB=1tqp \| SCENE= }}		{{STRUCTURE_1tqp\| PDB=1tqp \| SCENE= }}

	===Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to ATP===		===Crystal Structure of A. fulgidus Rio2 Serine Protein Kinase Bound to ATP===

-
-	<!--
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-	(as it appears on PubMed at http://www.pubmed.gov), where 15341724 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_15341724}}		{{ABSTRACT_PUBMED_15341724}}

	==About this Structure==		==About this Structure==
-	~~1TQP~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Archaeoglobus_fulgidus_dsm_4304~~ Archaeoglobus fulgidus ~~dsm 4304~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA].	+	[[1tqp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15341724~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015341724</ref><references group="xtra"/>
-	[[Category: Archaeoglobus fulgidus ~~dsm 4304~~]]	+	[[Category: Archaeoglobus fulgidus]]
	[[Category: LaRonde-LeBlanc, N.]]		[[Category: LaRonde-LeBlanc, N.]]
	[[Category: Wlodawer, A.]]		[[Category: Wlodawer, A.]]
-	[[Category: ~~Atp~~]]	+	[[Category: Ribosome]]
	[[Category: Serine kinase]]		[[Category: Serine kinase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:07:01 2009''

OCA at 09:07, 17 February 2009

2009-02-17T09:07:02Z

←Older revision		Revision as of 09:07, 17 February 2009
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	==About this Structure==		==About this Structure==
-	1TQP is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA].	+	1TQP is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus_dsm_4304 Archaeoglobus fulgidus dsm 4304]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TQP OCA].

	==Reference==		==Reference==
-	~~Crystal structure of A. fulgidus Rio2 defines a new family of serine protein kinases., LaRonde-LeBlanc N, Wlodawer A, Structure. 2004 Sep;12(9):1585-94.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15341724 15341724]~~	+	<ref group="xtra">PMID:15341724</ref><references group="xtra"/>
	[[Category: Archaeoglobus fulgidus dsm 4304]]		[[Category: Archaeoglobus fulgidus dsm 4304]]
-	[[Category: Single protein]]
	[[Category: LaRonde-LeBlanc, N.]]		[[Category: LaRonde-LeBlanc, N.]]
	[[Category: Wlodawer, A.]]		[[Category: Wlodawer, A.]]
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	[[Category: Serine kinase]]		[[Category: Serine kinase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 15~~:08:~~45 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 11:07:01 2009''