1u56 - Revision history

OCA at 06:38, 23 August 2023

2023-08-23T06:38:32Z

←Older revision		Revision as of 06:38, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='1u56' size='340' side='right'caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1u56' size='340' side='right'caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~As_1~~.~~2430 As 1~~.~~2430~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1U56 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis Caldanaerobacter subterraneus subsp. tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1U56 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1u4h\|1u4h]], [[1u55\|1u55]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 AS 1.2430])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [https://pdbe.org/1u56 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [https://www.ebi.ac.uk/pdbsum/1u56 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1u56 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [~~http~~://pdbe.org/1u56 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1u56 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1u56 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8RBX6_CALS4 Q8RBX6_CALS4]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~As 1 2430~~]]	+	[[Category: Caldanaerobacter subterraneus subsp. tengcongensis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Boon~~, E M~~]]	+	[[Category: Boon EM]]
-	[[Category: Karow~~, D S~~]]	+	[[Category: Karow DS]]
-	[[Category: Kuriyan, J]]	+	[[Category: Kuriyan J]]
-	[[Category: Marletta~~, M A~~]]	+	[[Category: Marletta MA]]
-	[[Category: Pellicena, P]]	+	[[Category: Pellicena P]]
-	~~[[Category: Chemotaxis]]~~	+
-	~~[[Category: H-nox domain]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Oxygen sensor]]~~	+
-	~~[[Category: Signal transduction]]~~	+
-	~~[[Category: Signaling protein~~]]	+

OCA at 07:21, 30 December 2020

2020-12-30T07:21:21Z

←Older revision		Revision as of 07:21, 30 December 2020
Line 1:		Line 1:

	==Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (Water-ligated, ferric form)==		==Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (Water-ligated, ferric form)==
-	<StructureSection load='1u56' size='340' side='right' caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='1u56' size='340' side='right'caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/As_1.2430 As 1.2430]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1U56 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/As_1.2430 As 1.2430]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1U56 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u4h\|1u4h]], [[1u55\|1u55]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1u4h\|1u4h]], [[1u55\|1u55]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 AS 1.2430])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 AS 1.2430])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://pdbe.org/1u56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u56 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://pdbe.org/1u56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u56 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Chemotaxis protein\|Chemotaxis protein]]	+	*[[Chemotaxis protein 3D structures\|Chemotaxis protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: As 1 2430]]		[[Category: As 1 2430]]
		+	[[Category: Large Structures]]
	[[Category: Boon, E M]]		[[Category: Boon, E M]]
	[[Category: Karow, D S]]		[[Category: Karow, D S]]

OCA at 08:42, 21 March 2018

2018-03-21T08:42:30Z

←Older revision		Revision as of 08:42, 21 March 2018
Line 1:		Line 1:
		+
	==Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (Water-ligated, ferric form)==		==Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (Water-ligated, ferric form)==
	<StructureSection load='1u56' size='340' side='right' caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1u56' size='340' side='right' caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u4h\|1u4h]], [[1u55\|1u55]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u4h\|1u4h]], [[1u55\|1u55]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 AS 1.2430])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 AS 1.2430])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://pdbe.org/1u56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://pdbe.org/1u56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1u56 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u5/1u56_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u5/1u56_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 01:34, 10 February 2016

2016-02-10T01:34:02Z

←Older revision		Revision as of 01:34, 10 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1u56 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 04:03, 11 September 2015

2015-09-11T04:03:16Z

←Older revision		Revision as of 04:03, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1u56' size='340' side='right' caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1u56' size='340' side='right' caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Caldanaerobacter_subterraneus_subsp~~.~~_tengcongensis Caldanaerobacter subterraneus subsp~~. ~~tengcongensis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U56 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/As_1.2430 As 1.2430]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U56 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u4h\|1u4h]], [[1u55\|1u55]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u4h\|1u4h]], [[1u55\|1u55]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 ~~Caldanaerobacter subterraneus subsp~~. ~~tengcongensis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 AS 1.2430])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://pdbe.org/1u56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1u56" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Caldanaerobacter subterraneus subsp. tengcongensis~~]]	+	[[Category: As 1 2430]]
	[[Category: Boon, E M]]		[[Category: Boon, E M]]
	[[Category: Karow, D S]]		[[Category: Karow, D S]]

OCA at 13:40, 6 January 2015

2015-01-06T13:40:10Z

←Older revision		Revision as of 13:40, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis Caldanaerobacter subterraneus subsp. tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U56 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis Caldanaerobacter subterraneus subsp. tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U56 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u4h\|1u4h]], [[1u55\|1u55]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u4h\|1u4h]], [[1u55\|1u55]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 Caldanaerobacter subterraneus subsp. tengcongensis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 Caldanaerobacter subterraneus subsp. tengcongensis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Caldanaerobacter subterraneus subsp. tengcongensis]]		[[Category: Caldanaerobacter subterraneus subsp. tengcongensis]]
-	[[Category: Boon, E M.]]	+	[[Category: Boon, E M]]
-	[[Category: Karow, D S.]]	+	[[Category: Karow, D S]]
-	[[Category: Kuriyan, J.]]	+	[[Category: Kuriyan, J]]
-	[[Category: Marletta, M A.]]	+	[[Category: Marletta, M A]]
-	[[Category: Pellicena, P.]]	+	[[Category: Pellicena, P]]
	[[Category: Chemotaxis]]		[[Category: Chemotaxis]]
	[[Category: H-nox domain]]		[[Category: H-nox domain]]

OCA at 21:54, 29 September 2014

2014-09-29T21:54:24Z

←Older revision		Revision as of 21:54, 29 September 2014
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-	[[~~Image:~~1u56.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (Water-ligated, ferric form)==
		+	<StructureSection load='1u56' size='340' side='right' caption='[[1u56]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis Caldanaerobacter subterraneus subsp. tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1U56 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1u4h\|1u4h]], [[1u55\|1u55]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Tar4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=119072 Caldanaerobacter subterraneus subsp. tengcongensis])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1u56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1u56 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1u56 RCSB], [http://www.ebi.ac.uk/pdbsum/1u56 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/u5/1u56_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Soluble guanylate cyclases are nitric oxide-responsive signaling proteins in which the nitric oxide sensor is a heme-binding domain of unknown structure that we have termed the heme-NO and oxygen binding (H-NOX) domain. H-NOX domains are also found in bacteria, either as isolated domains, or are fused through a membrane-spanning region to methyl-accepting chemotaxis proteins. We have determined the crystal structure of an oxygen-binding H-NOX domain of one such signaling protein from the obligate anaerobe Thermoanaerobacter tengcongensis at 1.77-angstroms resolution, revealing a protein fold unrelated to known structures. Particularly striking is the structure of the protoporphyrin IX group, which is distorted from planarity to an extent not seen before in protein-bound heme groups. Comparison of the structure of the H-NOX domain in two different crystal forms suggests a mechanism whereby alteration in the degree of distortion of the heme group is coupled to changes on the molecular surface of the H-NOX domain and potentially to changes in intermolecular interactions.

-	~~{{STRUCTURE_1u56\| PDB=1u56 \| SCENE= }}~~	+	Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases.,Pellicena P, Karow DS, Boon EM, Marletta MA, Kuriyan J Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12854-9. Epub 2004 Aug 23. PMID:15326296<ref>PMID:15326296</ref>

-	~~===Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (Water-ligated~~, ~~ferric form)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_15326296}}~~	+	==See Also==
-		+	*[[Chemotaxis protein\|Chemotaxis protein]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~1u56~~]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis Caldanaerobacter subterraneus subsp. tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:015326296<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Caldanaerobacter subterraneus subsp. tengcongensis]]		[[Category: Caldanaerobacter subterraneus subsp. tengcongensis]]
	[[Category: Boon, E M.]]		[[Category: Boon, E M.]]

OCA: Protected "1u56" [edit=sysop:move=sysop]

2013-01-05T13:29:16Z

Protected "1u56" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:29, 5 January 2013

OCA at 13:29, 5 January 2013

2013-01-05T13:29:14Z

←Older revision		Revision as of 13:29, 5 January 2013
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-	{{Seed}}
	[[Image:1u56.png\|left\|200px]]		[[Image:1u56.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1u56\| PDB=1u56 \| SCENE= }}		{{STRUCTURE_1u56\| PDB=1u56 \| SCENE= }}

	===Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (Water-ligated, ferric form)===		===Crystal structure of an oxygen binding H-NOX domain related to soluble guanylate cyclases (Water-ligated, ferric form)===

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-	<!--
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	{{ABSTRACT_PUBMED_15326296}}		{{ABSTRACT_PUBMED_15326296}}

	==About this Structure==		==About this Structure==
-	~~1U56~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Thermoanaerobacter_tengcongensis Thermoanaerobacter~~ tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA].	+	[[1u56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Caldanaerobacter_subterraneus_subsp._tengcongensis Caldanaerobacter subterraneus subsp. tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15326296~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015326296</ref><references group="xtra"/>
-	[[Category: ~~Thermoanaerobacter~~ tengcongensis]]	+	[[Category: Caldanaerobacter subterraneus subsp. tengcongensis]]
	[[Category: Boon, E M.]]		[[Category: Boon, E M.]]
	[[Category: Karow, D S.]]		[[Category: Karow, D S.]]
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	[[Category: Oxygen sensor]]		[[Category: Oxygen sensor]]
	[[Category: Signal transduction]]		[[Category: Signal transduction]]
-		+	[[Category: Signaling protein]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Feb 17 14:20:59 2009''~~	+

OCA at 12:21, 17 February 2009

2009-02-17T12:21:01Z

←Older revision		Revision as of 12:21, 17 February 2009
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	==About this Structure==		==About this Structure==
-	1U56 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Thermoanaerobacter_tengcongensis Thermoanaerobacter tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA].	+	1U56 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermoanaerobacter_tengcongensis Thermoanaerobacter tengcongensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1U56 OCA].

	==Reference==		==Reference==
-	Crystal structure of an oxygen-binding heme domain related to soluble guanylate cyclases., Pellicena P, Karow DS, Boon EM, Marletta MA, Kuriyan J, Proc Natl Acad Sci U S A. 2004 Aug 31;101(35):12854-9. Epub 2004 Aug 23. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15326296 15326296]~~	+	<ref group="xtra">PMID:15326296</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Thermoanaerobacter tengcongensis]]		[[Category: Thermoanaerobacter tengcongensis]]
	[[Category: Boon, E M.]]		[[Category: Boon, E M.]]
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	[[Category: Signal transduction]]		[[Category: Signal transduction]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 19~~:44:~~04 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 14:20:59 2009''