1uil - Revision history

OCA at 23:54, 27 December 2023

2023-12-27T23:54:13Z

←Older revision		Revision as of 23:54, 27 December 2023
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	==Double-stranded RNA-binding motif of Hypothetical protein BAB28848==		==Double-stranded RNA-binding motif of Hypothetical protein BAB28848==
-	<StructureSection load='1uil' size='340' side='right'caption='[[1uil~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='1uil' size='340' side='right'caption='[[1uil]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Lk3_transgenic_mice Lk3 transgenic mice~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UIL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UIL FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>RIKEN cDNA 2810480H04 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~10090 LK3 transgenic mice])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [https://pdbe.org/1uil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [https://www.ebi.ac.uk/pdbsum/1uil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uil ProSAT], [https://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [https://pdbe.org/1uil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [https://www.ebi.ac.uk/pdbsum/1uil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uil ProSAT], [https://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DHX9_MOUSE DHX9_MOUSE]] Component of the CRD-mediated complex that promotes MYC mRNA stability. Unwinds double-stranded DNA and RNA in a 3' to 5' direction. Alterations of secondary structure may subsequently influence interactions with proteins or other nucleic acids. Functions as a transcriptional activator. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity).	+	[https://www.uniprot.org/uniprot/DHX9_MOUSE DHX9_MOUSE] Component of the CRD-mediated complex that promotes MYC mRNA stability. Unwinds double-stranded DNA and RNA in a 3' to 5' direction. Alterations of secondary structure may subsequently influence interactions with proteins or other nucleic acids. Functions as a transcriptional activator. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lk3 transgenic mice~~]]	+	[[Category: Mus musculus]]
-	[[Category: Aoki, M]]	+	[[Category: Aoki M]]
-	[[Category: Hamana, H]]	+	[[Category: Hamana H]]
-	[[Category: Hayashi, F]]	+	[[Category: Hayashi F]]
-	[[Category: Hayashizaki, Y]]	+	[[Category: Hayashizaki Y]]
-	[[Category: Hirota, H]]	+	[[Category: Hirota H]]
-	[[Category: Inoue, M]]	+	[[Category: Inoue M]]
-	[[Category: Kigawa, T]]	+	[[Category: Kigawa T]]
-	[[Category: Kobayashi, N]]	+	[[Category: Kobayashi N]]
-	[[Category: Matsuda, T]]	+	[[Category: Matsuda T]]
-	[[Category: Matsuo, Y]]	+	[[Category: Matsuo Y]]
-	[[Category: Muto, Y]]	+	[[Category: Muto Y]]
-	[[Category: Nagata, T]]	+	[[Category: Nagata T]]
-	[[Category: Osanai, T]]	+	[[Category: Osanai T]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Seki E]]
-	[[Category: Seki, E]]	+	[[Category: Shirouzu M]]
-	[[Category: Shirouzu, M]]	+	[[Category: Tanaka A]]
-	[[Category: Tanaka, A]]	+	[[Category: Terada T]]
-	[[Category: Terada, T]]	+	[[Category: Yabuki T]]
-	[[Category: Yabuki, T]]	+	[[Category: Yokoyama S]]
-	[[Category: Yokoyama, S]]	+	[[Category: Yoshida M]]
-	[[Category: Yoshida, M]]	+
-	~~[[Category: Double-stranded rna-binding motif]]~~	+
-	~~[[Category: Dsrm]]~~	+
-	~~[[Category: Rna binding protein]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 06:45, 2 March 2022

2022-03-02T06:45:46Z

←Older revision		Revision as of 06:45, 2 March 2022
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	<StructureSection load='1uil' size='340' side='right'caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1uil' size='340' side='right'caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1UIL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UIL FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [~~http~~://pdbe.org/1uil PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1uil PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1uil ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [https://pdbe.org/1uil PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [https://www.ebi.ac.uk/pdbsum/1uil PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uil ProSAT], [https://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DHX9_MOUSE DHX9_MOUSE]] Component of the CRD-mediated complex that promotes MYC mRNA stability. Unwinds double-stranded DNA and RNA in a 3' to 5' direction. Alterations of secondary structure may subsequently influence interactions with proteins or other nucleic acids. Functions as a transcriptional activator. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity).	+	[[https://www.uniprot.org/uniprot/DHX9_MOUSE DHX9_MOUSE]] Component of the CRD-mediated complex that promotes MYC mRNA stability. Unwinds double-stranded DNA and RNA in a 3' to 5' direction. Alterations of secondary structure may subsequently influence interactions with proteins or other nucleic acids. Functions as a transcriptional activator. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:28, 30 December 2020

2020-12-30T07:28:25Z

←Older revision		Revision as of 07:28, 30 December 2020
Line 1:		Line 1:

	==Double-stranded RNA-binding motif of Hypothetical protein BAB28848==		==Double-stranded RNA-binding motif of Hypothetical protein BAB28848==
-	<StructureSection load='1uil' size='340' side='right' caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='1uil' size='340' side='right'caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1UIL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1UIL FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://pdbe.org/1uil PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1uil ProSAT], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://pdbe.org/1uil PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1uil ProSAT], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lk3 transgenic mice]]		[[Category: Lk3 transgenic mice]]
	[[Category: Aoki, M]]		[[Category: Aoki, M]]

OCA at 07:48, 28 March 2018

2018-03-28T07:48:33Z

←Older revision		Revision as of 07:48, 28 March 2018
Line 1:		Line 1:
		+
	==Double-stranded RNA-binding motif of Hypothetical protein BAB28848==		==Double-stranded RNA-binding motif of Hypothetical protein BAB28848==
	<StructureSection load='1uil' size='340' side='right' caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1uil' size='340' side='right' caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIL FirstGlance]. <br>		<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIL FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://pdbe.org/1uil PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://pdbe.org/1uil PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1uil ProSAT], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ui/1uil_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ui/1uil_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:38, 8 February 2016

2016-02-08T07:38:08Z

←Older revision		Revision as of 07:38, 8 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1uil ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 09:19, 10 September 2015

2015-09-10T09:19:38Z

←Older revision		Revision as of 09:19, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1uil' size='340' side='right' caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1uil' size='340' side='right' caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mus_musculus Mus musculus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIL FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 ~~Mus musculus~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://pdbe.org/1uil PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mus musculus~~]]	+	[[Category: Lk3 transgenic mice]]
	[[Category: Aoki, M]]		[[Category: Aoki, M]]
	[[Category: Hamana, H]]		[[Category: Hamana, H]]

OCA at 21:41, 24 December 2014

2014-12-24T21:41:56Z

←Older revision		Revision as of 21:41, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIL FirstGlance]. <br>		<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIL FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DHX9_MOUSE DHX9_MOUSE]] Component of the CRD-mediated complex that promotes MYC mRNA stability. Unwinds double-stranded DNA and RNA in a 3' to 5' direction. Alterations of secondary structure may subsequently influence interactions with proteins or other nucleic acids. Functions as a transcriptional activator. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
-	[[Category: Aoki, M.]]	+	[[Category: Aoki, M]]
-	[[Category: Hamana, H.]]	+	[[Category: Hamana, H]]
-	[[Category: Hayashi, F.]]	+	[[Category: Hayashi, F]]
-	[[Category: Hayashizaki, Y.]]	+	[[Category: Hayashizaki, Y]]
-	[[Category: Hirota, H.]]	+	[[Category: Hirota, H]]
-	[[Category: Inoue, M.]]	+	[[Category: Inoue, M]]
-	[[Category: Kigawa, T.]]	+	[[Category: Kigawa, T]]
-	[[Category: Kobayashi, N.]]	+	[[Category: Kobayashi, N]]
-	[[Category: Matsuda, T.]]	+	[[Category: Matsuda, T]]
-	[[Category: Matsuo, Y.]]	+	[[Category: Matsuo, Y]]
-	[[Category: Muto, Y.]]	+	[[Category: Muto, Y]]
-	[[Category: Nagata, T.]]	+	[[Category: Nagata, T]]
-	[[Category: Osanai, T.]]	+	[[Category: Osanai, T]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Seki, E.]]	+	[[Category: Seki, E]]
-	[[Category: Shirouzu, M.]]	+	[[Category: Shirouzu, M]]
-	[[Category: Tanaka, A.]]	+	[[Category: Tanaka, A]]
-	[[Category: Terada, T.]]	+	[[Category: Terada, T]]
-	[[Category: Yabuki, T.]]	+	[[Category: Yabuki, T]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
-	[[Category: Yoshida, M.]]	+	[[Category: Yoshida, M]]
	[[Category: Double-stranded rna-binding motif]]		[[Category: Double-stranded rna-binding motif]]
	[[Category: Dsrm]]		[[Category: Dsrm]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rna binding protein]]		[[Category: Rna binding protein]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 21:51, 29 September 2014

2014-09-29T21:51:52Z

←Older revision		Revision as of 21:51, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1uil.png\|left\|200px]]~~	+	==Double-stranded RNA-binding motif of Hypothetical protein BAB28848==
-		+	<StructureSection load='1uil' size='340' side='right' caption='[[1uil]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~{{STRUCTURE_1uil\| PDB=1uil \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1UIL FirstGlance]. <br>
-	===Double-stranded RNA-binding motif of Hypothetical protein BAB28848===	+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIKEN cDNA 2810480H04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 Mus musculus])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1uil FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uil OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1uil RCSB], [http://www.ebi.ac.uk/pdbsum/1uil PDBsum], [http://www.topsan.org/Proteins/RSGI/1uil TOPSAN]</span></td></tr>
-		+	<table>
-	==~~About this Structure~~==	+	== Evolutionary Conservation ==
-	[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA].	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ui/1uil_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Aoki, M.]]		[[Category: Aoki, M.]]

OCA: Protected "1uil" [edit=sysop:move=sysop]

2013-01-05T13:24:43Z

Protected "1uil" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:24, 5 January 2013

OCA at 13:24, 5 January 2013

2013-01-05T13:24:39Z

←Older revision		Revision as of 13:24, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1uil.png\|left\|200px]]		[[Image:1uil.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1uil", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1uil\| PDB=1uil \| SCENE= }}		{{STRUCTURE_1uil\| PDB=1uil \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1UIL~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full ~~crystallographic~~ information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA].	+	[[1uil]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UIL OCA].
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Aoki, M.]]		[[Category: Aoki, M.]]
Line 43:		Line 36:
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 13 09:57:03 2009''