1v6n - Revision history

OCA at 07:48, 25 October 2023

2023-10-25T07:48:53Z

←Older revision		Revision as of 07:48, 25 October 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6N FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.5Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1cr7\|1cr7]]~~, ~~[[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [https://pdbe.org/1v6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [https://www.ebi.ac.uk/pdbsum/1v6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [https://pdbe.org/1v6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [https://www.ebi.ac.uk/pdbsum/1v6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6n ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY]] D-galactose specific lectin.	+	[https://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY] D-galactose specific lectin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 38:		Line 38:
	[[Category: Arachis hypogaea]]		[[Category: Arachis hypogaea]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Jeyaprakash, A ~~Arockia~~]]	+	[[Category: Arockia Jeyaprakash A]]
-	[[Category: Natchiar, S ~~Kundhavai~~]]	+	[[Category: Kundhavai Natchiar S]]
-	[[Category: Ramya~~, T N.C~~]]	+	[[Category: Ramya TNC]]
-	[[Category: Suguna, K]]	+	[[Category: Suguna K]]
-	[[Category: Surolia, A]]	+	[[Category: Surolia A]]
-	[[Category: Thomas~~, C J~~]]	+	[[Category: Thomas CJ]]
-	[[Category: Vijayan, M]]	+	[[Category: Vijayan M]]
-	~~[[Category: Agglutinin]]~~	+
-	~~[[Category: Lectin]]~~	+
-	~~[[Category: Open quaternary association]]~~	+
-	~~[[Category: Peptide and monoclinic]]~~	+
-	~~[[Category: Sugar binding protein~~]]	+

OCA at 06:26, 6 October 2021

2021-10-06T06:26:11Z

←Older revision		Revision as of 06:26, 6 October 2021
Line 3:		Line 3:
	<StructureSection load='1v6n' size='340' side='right'caption='[[1v6n]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='1v6n' size='340' side='right'caption='[[1v6n]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1V6N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [~~http~~://pdbe.org/1v6n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1v6n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [https://pdbe.org/1v6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [https://www.ebi.ac.uk/pdbsum/1v6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6n ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY]] D-galactose specific lectin.	+	[[https://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY]] D-galactose specific lectin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 13:06, 1 January 2020

2020-01-01T13:06:24Z

←Older revision		Revision as of 13:06, 1 January 2020
Line 1:		Line 1:

	==Peanut lectin with 9mer peptide (PVIWSSATG)==		==Peanut lectin with 9mer peptide (PVIWSSATG)==
-	<StructureSection load='1v6n' size='340' side='right' caption='[[1v6n]], [[Resolution\|resolution]] 3.50Å' scene=''>	+	<StructureSection load='1v6n' size='340' side='right'caption='[[1v6n]], [[Resolution\|resolution]] 3.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6N FirstGlance]. <br>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Arachis hypogaea]]		[[Category: Arachis hypogaea]]
		+	[[Category: Large Structures]]
	[[Category: Jeyaprakash, A Arockia]]		[[Category: Jeyaprakash, A Arockia]]
	[[Category: Natchiar, S Kundhavai]]		[[Category: Natchiar, S Kundhavai]]

OCA at 07:56, 28 March 2018

2018-03-28T07:56:31Z

←Older revision		Revision as of 07:56, 28 March 2018
Line 1:		Line 1:
		+
	==Peanut lectin with 9mer peptide (PVIWSSATG)==		==Peanut lectin with 9mer peptide (PVIWSSATG)==
	<StructureSection load='1v6n' size='340' side='right' caption='[[1v6n]], [[Resolution\|resolution]] 3.50Å' scene=''>		<StructureSection load='1v6n' size='340' side='right' caption='[[1v6n]], [[Resolution\|resolution]] 3.50Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [http://pdbe.org/1v6n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [http://www.ebi.ac.uk/pdbsum/1v6n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [http://pdbe.org/1v6n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [http://www.ebi.ac.uk/pdbsum/1v6n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6n ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6n_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6n_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 20:18, 8 February 2016

2016-02-08T20:18:17Z

←Older revision		Revision as of 20:18, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v6n ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 15:02, 10 September 2015

2015-09-10T15:02:24Z

←Older revision		Revision as of 15:02, 10 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [http://www.ebi.ac.uk/pdbsum/1v6n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [http://pdbe.org/1v6n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [http://www.ebi.ac.uk/pdbsum/1v6n PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1v6n" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 01:53, 25 December 2014

2014-12-25T01:53:54Z

←Older revision		Revision as of 01:53, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6N FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [http://www.ebi.ac.uk/pdbsum/1v6n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [http://www.ebi.ac.uk/pdbsum/1v6n PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LECG_ARAHY LECG_ARAHY]] D-galactose specific lectin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Arachis hypogaea]]		[[Category: Arachis hypogaea]]
-	[[Category: Jeyaprakash, A Arockia.]]	+	[[Category: Jeyaprakash, A Arockia]]
-	[[Category: Natchiar, S Kundhavai.]]	+	[[Category: Natchiar, S Kundhavai]]
-	[[Category: Ramya, T N.C.]]	+	[[Category: Ramya, T N.C]]
-	[[Category: Suguna, K.]]	+	[[Category: Suguna, K]]
-	[[Category: Surolia, A.]]	+	[[Category: Surolia, A]]
-	[[Category: Thomas, C J.]]	+	[[Category: Thomas, C J]]
-	[[Category: Vijayan, M.]]	+	[[Category: Vijayan, M]]
	[[Category: Agglutinin]]		[[Category: Agglutinin]]
	[[Category: Lectin]]		[[Category: Lectin]]

OCA at 21:28, 29 September 2014

2014-09-29T21:28:51Z

←Older revision		Revision as of 21:28, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1v6n.~~png~~\|~~left~~\|200px]]	+	==Peanut lectin with 9mer peptide (PVIWSSATG)==
		+	<StructureSection load='1v6n' size='340' side='right' caption='[[1v6n]], [[Resolution\|resolution]] 3.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1v6n]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6N FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cr7\|1cr7]], [[1v6i\|1v6i]], [[1v6j\|1v6j]], [[1v6k\|1v6k]], [[1v6l\|1v6l]], [[1v6m\|1v6m]], [[1v6o\|1v6o]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v6n RCSB], [http://www.ebi.ac.uk/pdbsum/1v6n PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6n_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Until recently, it has only been possible to grow crystals of peanut lectin when complexed with sugar ligands. It is now shown that it is possible to grow peanut lectin crystals at acidic pH in the presence of oligopeptides corresponding to a loop in the lectin molecule. Crystals have also been prepared in the presence of these peptides as well as lactose. Low-pH crystal forms of the lectin-lactose complex similar to those obtained at neutral pH have also been grown. Thus, crystals of peanut lectin grown under different environmental conditions, at two pH values with and without sugar bound to the lectin, are now available. They have been used to explore the plasticity and hydration of the molecule. A detailed comparison between different structures shows that the lectin molecule is sturdy and that the effect of changes in pH, ligand binding and environment on it is small. The region involving the curved front beta-sheet and the loops around the second hydrophobic core is comparatively rigid. The back beta-sheet involved in quaternary association, which exhibits considerable variability, is substantially flexible, as is the sugar-binding region. The numbers of invariant water molecules in the hydration shell are small and they are mainly involved in metal coordination or in stabilizing unusual structural features. Small consistent movements occur in the combining site upon sugar binding, although the site is essentially preformed.

-	~~{{STRUCTURE_1v6n\| PDB=1v6n \| SCENE= }}~~	+	Structural plasticity of peanut lectin: an X-ray analysis involving variation in pH, ligand binding and crystal structure.,Kundhavai Natchiar S, Arockia Jeyaprakash A, Ramya TN, Thomas CJ, Suguna K, Surolia A, Vijayan M Acta Crystallogr D Biol Crystallogr. 2004 Feb;60(Pt 2):211-9. Epub 2004, Jan 23. PMID:14747696<ref>PMID:14747696</ref>

-	~~===Peanut lectin with 9mer peptide (PVIWSSATG)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_14747696}}~~	+	==See Also==
-		+	*[[Galactose-binding lectin\|Galactose-binding lectin]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~1v6n~~]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Arachis_hypogaea Arachis hypogaea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6N OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:014747696<~~/~~ref~~><~~ref group="xtra">PMID:011288176</ref><references group="xtra"~~/>	+
	[[Category: Arachis hypogaea]]		[[Category: Arachis hypogaea]]
	[[Category: Jeyaprakash, A Arockia.]]		[[Category: Jeyaprakash, A Arockia.]]

OCA at 09:25, 16 January 2013

2013-01-16T09:25:39Z

←Older revision		Revision as of 09:25, 16 January 2013
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	[[Image:1v6n.png\|left\|200px]]		[[Image:1v6n.png\|left\|200px]]

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	{{STRUCTURE_1v6n\| PDB=1v6n \| SCENE= }}		{{STRUCTURE_1v6n\| PDB=1v6n \| SCENE= }}

	===Peanut lectin with 9mer peptide (PVIWSSATG)===		===Peanut lectin with 9mer peptide (PVIWSSATG)===

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14747696~~</ref><ref group="xtra">PMID:~~11288176~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014747696</ref><ref group="xtra">PMID:011288176</ref><references group="xtra"/>
	[[Category: Arachis hypogaea]]		[[Category: Arachis hypogaea]]
	[[Category: Jeyaprakash, A Arockia.]]		[[Category: Jeyaprakash, A Arockia.]]

OCA: Protected "1v6n" [edit=sysop:move=sysop]

2011-03-14T22:13:09Z

Protected "1v6n" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:13, 14 March 2011