1v6s - Revision history

OCA at 07:48, 25 October 2023

2023-10-25T07:48:59Z

←Older revision		Revision as of 07:48, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='1v6s' size='340' side='right'caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1v6s' size='340' side='right'caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6S FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https:~~/~~/en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase]~~, ~~with EC number [https~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [https://pdbe.org/1v6s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [https://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6s ProSAT], [https://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [https://pdbe.org/1v6s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [https://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6s ProSAT], [https://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PGK_THET8 PGK_THET8]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Phosphoglycerate kinase]]
-	[[Category: Kunishima, N]]
-	[[Category: Mizutani, H]]
-	[[Category: Structural genomic]]
-	[[Category: Rsgi]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: ~~Transferase~~]]	+	[[Category: Kunishima N]]
		+	[[Category: Mizutani H]]

OCA at 06:26, 6 October 2021

2021-10-06T06:26:21Z

←Older revision		Revision as of 06:26, 6 October 2021
Line 3:		Line 3:
	<StructureSection load='1v6s' size='340' side='right'caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1v6s' size='340' side='right'caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1V6S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V6S FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [~~http~~://pdbe.org/1v6s PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6s ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [https://pdbe.org/1v6s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [https://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6s ProSAT], [https://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 13:02, 1 January 2020

2020-01-01T13:02:09Z

←Older revision		Revision as of 13:02, 1 January 2020
Line 1:		Line 1:

	==Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8==		==Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8==
-	<StructureSection load='1v6s' size='340' side='right' caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='1v6s' size='340' side='right'caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6S FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6S FirstGlance]. <br>
Line 20:		Line 20:

	==See Also==		==See Also==
-	*[[Phosphoglycerate ~~Kinase~~\|Phosphoglycerate ~~Kinase~~]]	+	*[[Phosphoglycerate kinase 3D structures\|Phosphoglycerate kinase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
		+	[[Category: Large Structures]]
	[[Category: Phosphoglycerate kinase]]		[[Category: Phosphoglycerate kinase]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]

OCA at 07:51, 28 March 2018

2018-03-28T07:51:26Z

←Older revision		Revision as of 07:51, 28 March 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8==		==Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8==
	<StructureSection load='1v6s' size='340' side='right' caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1v6s' size='340' side='right' caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [http://pdbe.org/1v6s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [http://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [http://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [http://pdbe.org/1v6s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [http://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v6s ProSAT], [http://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6s_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6s_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:43, 10 February 2016

2016-02-10T04:43:52Z

←Older revision		Revision as of 04:43, 10 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v6s ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 05:29, 11 September 2015

2015-09-11T05:29:50Z

←Older revision		Revision as of 05:29, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1v6s' size='340' side='right' caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='1v6s' size='340' side='right' caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6S FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6S FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [http://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [http://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [http://pdbe.org/1v6s PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [http://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [http://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Phosphoglycerate kinase]]		[[Category: Phosphoglycerate kinase]]
-	[[Category: Thermus thermophilus]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]
	[[Category: Mizutani, H]]		[[Category: Mizutani, H]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
		+	[[Category: Thermus thermophilus]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 13:38, 6 January 2015

2015-01-06T13:38:41Z

←Older revision		Revision as of 13:38, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6S FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6S FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [http://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [http://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [http://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [http://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 24:
	[[Category: Phosphoglycerate kinase]]		[[Category: Phosphoglycerate kinase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Kunishima, N.]]	+	[[Category: Kunishima, N]]
-	[[Category: Mizutani, H.]]	+	[[Category: Mizutani, H]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.]]~~	+	[[Category: Structural genomic]]
-	~~[[Category: Phosphoglycerate kinase]]~~	+
-	~~[[Category: Riken structural genomics/proteomics initiative~~]]	+
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
-	[[Category: Thermus thermophilus]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 20:19, 28 September 2014

2014-09-28T20:19:20Z

←Older revision		Revision as of 20:19, 28 September 2014
Line 1:		Line 1:
-	~~[[Image:1v6s.png\|left\|200px]]~~	+	==Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8==
-		+	<StructureSection load='1v6s' size='340' side='right' caption='[[1v6s]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~{{STRUCTURE_1v6s\| PDB=1v6s \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V6S FirstGlance]. <br>
-	===Crystal Structure of Phosphoglycerate Kinase from Thermus thermophilus HB8===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoglycerate_kinase Phosphoglycerate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.3 2.7.2.3] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v6s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v6s OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v6s RCSB], [http://www.ebi.ac.uk/pdbsum/1v6s PDBsum], [http://www.topsan.org/Proteins/RSGI/1v6s TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v6/1v6s_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Phosphoglycerate Kinase\|Phosphoglycerate Kinase]]		*[[Phosphoglycerate Kinase\|Phosphoglycerate Kinase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Phosphoglycerate kinase]]		[[Category: Phosphoglycerate kinase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

OCA at 16:22, 20 October 2012

2012-10-20T16:22:27Z

←Older revision		Revision as of 16:22, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[1v6s]] is a 2 chain structure ~~of [[Phosphoglycerate Kinase]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA].	+	[[1v6s]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V6S OCA].

	==See Also==		==See Also==

OCA: Protected "1v6s" [edit=sysop:move=sysop]

2012-07-26T21:27:49Z

Protected "1v6s" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:27, 26 July 2012