1v8q - Revision history

OCA at 23:59, 27 December 2023

2023-12-27T23:59:37Z

←Older revision		Revision as of 23:59, 27 December 2023
Line 3:		Line 3:
	<StructureSection load='1v8q' size='340' side='right'caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1v8q' size='340' side='right'caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [https://pdbe.org/1v8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [https://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v8q ProSAT], [https://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [https://pdbe.org/1v8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [https://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v8q ProSAT], [https://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RL27_THET8 RL27_THET8]] Found on the solvent side of the large subunit.[HAMAP-Rule:MF_00539]	+	[https://www.uniprot.org/uniprot/RL27_THET8 RL27_THET8] Found on the solvent side of the large subunit.[HAMAP-Rule:MF_00539]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Kuramitsu, S~~]]	+	[[Category: Thermus thermophilus]]
-	[[Category: ~~Murayama, K~~]]	+	[[Category: Kuramitsu S]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Murayama K]]
-	[[Category: Shirouzu, M]]	+	[[Category: Shirouzu M]]
-	[[Category: Takemoto-Hori, C]]	+	[[Category: Takemoto-Hori C]]
-	[[Category: Terada, T]]	+	[[Category: Terada T]]
-	[[Category: Wang, H]]	+	[[Category: Wang H]]
-	[[Category: Yokoyama, S]]	+	[[Category: Yokoyama S]]
-	~~[[Category: Proteomic]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Translation~~]]	+

OCA at 06:27, 6 October 2021

2021-10-06T06:27:37Z

←Older revision		Revision as of 06:27, 6 October 2021
Line 3:		Line 3:
	<StructureSection load='1v8q' size='340' side='right'caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1v8q' size='340' side='right'caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [~~http~~://pdbe.org/1v8q PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1v8q ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [https://pdbe.org/1v8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [https://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v8q ProSAT], [https://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RL27_THET8 RL27_THET8]] Found on the solvent side of the large subunit.[HAMAP-Rule:MF_00539]	+	[[https://www.uniprot.org/uniprot/RL27_THET8 RL27_THET8]] Found on the solvent side of the large subunit.[HAMAP-Rule:MF_00539]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 12:40, 1 January 2020

2020-01-01T12:40:37Z

←Older revision		Revision as of 12:40, 1 January 2020
Line 1:		Line 1:

	==Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8==		==Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8==
-	<StructureSection load='1v8q' size='340' side='right' caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='1v8q' size='340' side='right'caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>
Line 36:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
		+	[[Category: Large Structures]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]
	[[Category: Murayama, K]]		[[Category: Murayama, K]]

OCA at 07:30, 28 March 2018

2018-03-28T07:30:34Z

←Older revision		Revision as of 07:30, 28 March 2018
Line 1:		Line 1:
		+
	==Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8==		==Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8==
	<StructureSection load='1v8q' size='340' side='right' caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1v8q' size='340' side='right' caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [http://pdbe.org/1v8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [http://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [http://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [http://pdbe.org/1v8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [http://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v8q ProSAT], [http://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v8/1v8q_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v8/1v8q_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 23:11, 9 February 2016

2016-02-09T23:11:06Z

←Older revision		Revision as of 23:11, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v8q ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:58, 11 September 2015

2015-09-11T02:58:55Z

←Older revision		Revision as of 02:58, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1v8q' size='340' side='right' caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1v8q' size='340' side='right' caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [http://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [http://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [http://pdbe.org/1v8q PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [http://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [http://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RL27_THET8 RL27_THET8]] Found on the solvent side of the large subunit.[HAMAP-Rule:MF_00539]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1v8q" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 31:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermus thermophilus~~]]	+	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Kuramitsu, S]]		[[Category: Kuramitsu, S]]
	[[Category: Murayama, K]]		[[Category: Murayama, K]]

OCA at 12:15, 6 January 2015

2015-01-06T12:15:19Z

←Older revision		Revision as of 12:15, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [http://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [http://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [http://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [http://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Kuramitsu, S.]]	+	[[Category: Kuramitsu, S]]
-	[[Category: Murayama, K.]]	+	[[Category: Murayama, K]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Shirouzu, M.]]	+	[[Category: Shirouzu, M]]
-	[[Category: Takemoto-Hori, C.]]	+	[[Category: Takemoto-Hori, C]]
-	[[Category: Terada, T.]]	+	[[Category: Terada, T]]
-	[[Category: Wang, H.]]	+	[[Category: Wang, H]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Proteomic]]		[[Category: Proteomic]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
	[[Category: Translation]]		[[Category: Translation]]

OCA at 23:10, 28 September 2014

2014-09-28T23:10:31Z

←Older revision		Revision as of 23:10, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1v8q.~~png\|left~~\|200px]]	+	==Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8==
		+	<StructureSection load='1v8q' size='340' side='right' caption='[[1v8q]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V8Q FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v8q OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v8q RCSB], [http://www.ebi.ac.uk/pdbsum/1v8q PDBsum], [http://www.topsan.org/Proteins/RSGI/1v8q TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v8/1v8q_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Ribosomal protein L27 is located near the peptidyltransferase center at the interface of ribosomal subunits, and is important for ribosomal assembly and function. We report the crystal structure of ribosomal protein L27 from Thermus thermophilus HB8, which was determined by the multiwavelength anomalous dispersion method and refined to an R-factor of 19.7% (R(free) = 23.6%) at 2.8 A resolution. The overall fold is an all beta-sheet hybrid. It consists of two sets of four-stranded beta-sheets formed around a well-defined hydrophobic core, with a highly positive charge on the protein surface. The structure of ribosomal protein L27 from T. thermophilus HB8 in the RNA-free form is investigated, and its functional roles in the ribosomal subunit are discussed.

-	~~{{STRUCTURE_1v8q\| PDB=1v8q \| SCENE= }}~~	+	Crystal structure of ribosomal protein L27 from Thermus thermophilus HB8.,Wang H, Takemoto CH, Murayama K, Sakai H, Tatsuguchi A, Terada T, Shirouzu M, Kuramitsu S, Yokoyama S Protein Sci. 2004 Oct;13(10):2806-10. Epub 2004 Aug 31. PMID:15340170<ref>PMID:15340170</ref>

-	~~===Crystal structure~~ of ~~ribosomal protein L27 from Thermus thermophilus HB8===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15340170}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1v8q]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Thermus_thermophilus Thermus thermophilus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA].~~	+

	==See Also==		==See Also==
	*[[Ribosomal protein L27\|Ribosomal protein L27]]		*[[Ribosomal protein L27\|Ribosomal protein L27]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015340170<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Kuramitsu, S.]]		[[Category: Kuramitsu, S.]]

OCA at 15:28, 20 October 2012

2012-10-20T15:28:34Z

←Older revision		Revision as of 15:28, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1v8q]] is a 4 chain structure ~~of [[Ribosomal protein L27]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA].	+	[[1v8q]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V8Q OCA].

	==See Also==		==See Also==

OCA: Protected "1v8q" [edit=sysop:move=sysop]

2012-07-26T18:30:18Z

Protected "1v8q" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:30, 26 July 2012