1v9m - Revision history

OCA at 00:00, 28 December 2023

2023-12-28T00:00:15Z

←Older revision		Revision as of 00:00, 28 December 2023
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	<StructureSection load='1v9m' size='340' side='right'caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='1v9m' size='340' side='right'caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V9M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V9M FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [https://pdbe.org/1v9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [https://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v9m ProSAT], [https://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [https://pdbe.org/1v9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [https://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v9m ProSAT], [https://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/VATC_THET8 VATC_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane.	+	[https://www.uniprot.org/uniprot/VATC_THET8 VATC_THET8] Produces ATP from ADP in the presence of a proton gradient across the membrane.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kita, A]]
-	[[Category: Miki, K]]
-	[[Category: Numoto, N]]
-	[[Category: Structural genomic]]
-	[[Category: Hydrolase]]
-	[[Category: Rsgi]]
-	[[Category: The c subunit]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: ~~V-type atpase~~]]	+	[[Category: Kita A]]
-	[[Category: ~~Vov1-atpase~~]]	+	[[Category: Miki K]]
		+	[[Category: Numoto N]]

OCA at 13:18, 13 October 2021

2021-10-13T13:18:17Z

←Older revision		Revision as of 13:18, 13 October 2021
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	<StructureSection load='1v9m' size='340' side='right'caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='1v9m' size='340' side='right'caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1V9M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1V9M FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [~~http~~://pdbe.org/1v9m PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1v9m ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [https://pdbe.org/1v9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [https://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1v9m ProSAT], [https://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/VATC_THET8 VATC_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane.	+	[[https://www.uniprot.org/uniprot/VATC_THET8 VATC_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 10:35, 8 January 2020

2020-01-08T10:35:57Z

←Older revision		Revision as of 10:35, 8 January 2020
Line 1:		Line 1:

	==Crystal structure of the C subunit of V-type ATPase from Thermus thermophilus==		==Crystal structure of the C subunit of V-type ATPase from Thermus thermophilus==
-	<StructureSection load='1v9m' size='340' side='right' caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>	+	<StructureSection load='1v9m' size='340' side='right'caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V9M FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V9M FirstGlance]. <br>
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[ATPase\|ATPase]]	+	*[[ATPase 3D structures\|ATPase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
		+	[[Category: Large Structures]]
	[[Category: Kita, A]]		[[Category: Kita, A]]
	[[Category: Miki, K]]		[[Category: Miki, K]]

OCA at 07:40, 4 April 2018

2018-04-04T07:40:24Z

←Older revision		Revision as of 07:40, 4 April 2018
Line 1:		Line 1:
		+
	==Crystal structure of the C subunit of V-type ATPase from Thermus thermophilus==		==Crystal structure of the C subunit of V-type ATPase from Thermus thermophilus==
	<StructureSection load='1v9m' size='340' side='right' caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='1v9m' size='340' side='right' caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [http://pdbe.org/1v9m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [http://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [http://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [http://pdbe.org/1v9m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [http://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1v9m ProSAT], [http://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v9/1v9m_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v9/1v9m_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 31:		Line 32:
	==See Also==		==See Also==
	*[[ATPase\|ATPase]]		*[[ATPase\|ATPase]]
-	*[[V-ATPase\|V-ATPase]]
	== References ==		== References ==
	<references/>		<references/>
Line 40:		Line 40:
	[[Category: Miki, K]]		[[Category: Miki, K]]
	[[Category: Numoto, N]]		[[Category: Numoto, N]]
-	[[Category: Hydrolase]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Hydrolase]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: The c subunit]]		[[Category: The c subunit]]

OCA at 11:52, 8 February 2016

2016-02-08T11:52:17Z

←Older revision		Revision as of 11:52, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1v9m ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:19, 10 September 2015

2015-09-10T11:19:18Z

←Older revision		Revision as of 11:19, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1v9m' size='340' side='right' caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='1v9m' size='340' side='right' caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V9M FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V9M FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [http://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [http://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [http://pdbe.org/1v9m PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [http://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [http://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1v9m" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermus thermophilus~~]]	+	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Kita, A]]		[[Category: Kita, A]]
	[[Category: Miki, K]]		[[Category: Miki, K]]
Line 43:		Line 44:
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: The c subunit]]		[[Category: The c subunit]]
		+	[[Category: Thermus thermophilus]]
	[[Category: V-type atpase]]		[[Category: V-type atpase]]
	[[Category: Vov1-atpase]]		[[Category: Vov1-atpase]]

OCA at 23:07, 24 December 2014

2014-12-24T23:07:21Z

←Older revision		Revision as of 23:07, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V9M FirstGlance]. <br>		<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V9M FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [http://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [http://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [http://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [http://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/VATC_THET8 VATC_THET8]] Produces ATP from ADP in the presence of a proton gradient across the membrane.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Kita, A.]]	+	[[Category: Kita, A]]
-	[[Category: Miki, K.]]	+	[[Category: Miki, K]]
-	[[Category: Numoto, N.]]	+	[[Category: Numoto, N]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	[[Category: ~~Riken structural genomics/proteomics initiative~~]]	+	[[Category: Structural genomic]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
	[[Category: The c subunit]]		[[Category: The c subunit]]
-	[[Category: Thermus thermophilus]]
	[[Category: V-type atpase]]		[[Category: V-type atpase]]
	[[Category: Vov1-atpase]]		[[Category: Vov1-atpase]]

OCA at 19:11, 29 September 2014

2014-09-29T19:11:03Z

←Older revision		Revision as of 19:11, 29 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1v9m~~\| ~~PDB~~=1v9m \| ~~SCENE~~= }}	+	==Crystal structure of the C subunit of V-type ATPase from Thermus thermophilus==
-	===~~Crystal~~ structure of the C subunit of V-type ATPase from Thermus thermophilus~~===~~	+	<StructureSection load='1v9m' size='340' side='right' caption='[[1v9m]], [[Resolution\|resolution]] 1.85Å' scene=''>
-	~~{{ABSTRACT_PUBMED_15103125}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1v9m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1V9M FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/H(+)-transporting_two-sector_ATPase H(+)-transporting two-sector ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.3.14 3.6.3.14] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1v9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1v9m OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1v9m RCSB], [http://www.ebi.ac.uk/pdbsum/1v9m PDBsum], [http://www.topsan.org/Proteins/RSGI/1v9m TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v9/1v9m_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The V-type H(+)-ATPases are similar to the F-type ATP synthases in their structure and functional mechanism. They hydrolyze ATP coupled with proton translocation across a membrane, but in some archaea and eubacteria they also synthesize ATP in the reverse reaction. The C subunit is one of the components of the membrane-bound V(0) moiety of V-type ATPases. The C subunit of V-type H(+)-ATPase from Thermus thermophilus was crystallized in a monoclinic form and its crystal structure was determined at 1.85 A resolution by the MAD method using selenomethionyl protein. The structure has a cone (tapered cylinder) shape consisting of only two types of helix (long and short) as secondary-structure elements. The molecule is divided into three similar domains, each of which has essentially the same topology. On the basis of the structural features and molecular-surface charge distribution, it is suggested that the bottom side of the C subunit is a possible binding site for the V(0) proteolipid L-subunit ring and that the C subunit might function as a spacer unit between the proteolipid L-subunit ring and the rotating V(1) central shaft.

-	~~==About this~~ Structure==	+	Structure of the C subunit of V-type ATPase from Thermus thermophilus at 1.85 A resolution.,Numoto N, Kita A, Miki K Acta Crystallogr D Biol Crystallogr. 2004 May;60(Pt 5):810-5. Epub 2004, Apr 21. PMID:15103125<ref>PMID:15103125</ref>
-	~~[[1v9m]] is a 1 chain structure with sequence~~ from ~~[http://en.wikipedia.org/wiki/Thermus_thermophilus~~ Thermus thermophilus]. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=1V9M OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
-	*[[~~ATP synthase~~\|~~ATP synthase~~]]	+	*[[ATPase\|ATPase]]
	*[[V-ATPase\|V-ATPase]]		*[[V-ATPase\|V-ATPase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015103125<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Kita, A.]]		[[Category: Kita, A.]]

OCA at 10:03, 11 March 2013

2013-03-11T10:03:05Z

←Older revision		Revision as of 10:03, 11 March 2013
Line 1:		Line 1:
-	[[Image:1v9m.png\|left\|200px]]
-
	{{STRUCTURE_1v9m\| PDB=1v9m \| SCENE= }}		{{STRUCTURE_1v9m\| PDB=1v9m \| SCENE= }}
-
	===Crystal structure of the C subunit of V-type ATPase from Thermus thermophilus===		===Crystal structure of the C subunit of V-type ATPase from Thermus thermophilus===
-
	{{ABSTRACT_PUBMED_15103125}}		{{ABSTRACT_PUBMED_15103125}}

OCA at 10:02, 20 October 2012

2012-10-20T10:02:53Z

←Older revision		Revision as of 10:02, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1v9m]] is a 1 chain structure ~~of [[ATP synthase]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA].	+	[[1v9m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1V9M OCA].

	==See Also==		==See Also==
	*[[ATP synthase\|ATP synthase]]		*[[ATP synthase\|ATP synthase]]
		+	*[[V-ATPase\|V-ATPase]]

	==Reference==		==Reference==