1vb4 - Revision history

OCA at 00:00, 28 December 2023

2023-12-28T00:00:56Z

←Older revision		Revision as of 00:00, 28 December 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.3Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1smv\|1smv]], [[1vb2\|1vb2]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [https://pdbe.org/1vb4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [https://www.ebi.ac.uk/pdbsum/1vb4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vb4 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [https://pdbe.org/1vb4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [https://www.ebi.ac.uk/pdbsum/1vb4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vb4 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9EB06_9VIRU Q9EB06_9VIRU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Sesbania mosaic virus]]		[[Category: Sesbania mosaic virus]]
-	[[Category: Lokesh~~, G L~~]]	+	[[Category: Lokesh GL]]
-	[[Category: Murthy~~, M R~~]]	+	[[Category: Murthy MR]]
-	[[Category: Sangita, V]]	+	[[Category: Sangita V]]
-	[[Category: Saravanan, V]]	+	[[Category: Saravanan V]]
-	[[Category: Satheshkumar~~, P S~~]]	+	[[Category: Satheshkumar PS]]
-	[[Category: Savithri~~, H S~~]]	+	[[Category: Savithri HS]]
-	[[Category: Vijay~~, C S]]~~	+	[[Category: Vijay CS]]
-	~~[[Category: Deletion mutant]]~~	+
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: T=1 capsid]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 13:19, 13 October 2021

2021-10-13T13:19:16Z

←Older revision		Revision as of 13:19, 13 October 2021
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	<StructureSection load='1vb4' size='340' side='right'caption='[[1vb4]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='1vb4' size='340' side='right'caption='[[1vb4]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smv\|1smv]], [[1vb2\|1vb2]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1smv\|1smv]], [[1vb2\|1vb2]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [~~http~~://pdbe.org/1vb4 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1vb4 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1vb4 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [https://pdbe.org/1vb4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [https://www.ebi.ac.uk/pdbsum/1vb4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vb4 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</div>		</div>
	<div class="pdbe-citations 1vb4" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1vb4" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:44, 8 January 2020

2020-01-08T10:44:23Z

←Older revision		Revision as of 10:44, 8 January 2020
Line 1:		Line 1:

	==T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36==		==T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36==
-	<StructureSection load='1vb4' size='340' side='right' caption='[[1vb4]], [[Resolution\|resolution]] 3.30Å' scene=''>	+	<StructureSection load='1vb4' size='340' side='right'caption='[[1vb4]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Sesbania mosaic virus]]		[[Category: Sesbania mosaic virus]]
	[[Category: Lokesh, G L]]		[[Category: Lokesh, G L]]

OCA at 07:47, 4 April 2018

2018-04-04T07:47:43Z

←Older revision		Revision as of 07:47, 4 April 2018
Line 1:		Line 1:
		+
	==T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36==		==T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36==
	<StructureSection load='1vb4' size='340' side='right' caption='[[1vb4]], [[Resolution\|resolution]] 3.30Å' scene=''>		<StructureSection load='1vb4' size='340' side='right' caption='[[1vb4]], [[Resolution\|resolution]] 3.30Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smv\|1smv]], [[1vb2\|1vb2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smv\|1smv]], [[1vb2\|1vb2]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [http://pdbe.org/1vb4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [http://www.ebi.ac.uk/pdbsum/1vb4 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [http://pdbe.org/1vb4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [http://www.ebi.ac.uk/pdbsum/1vb4 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1vb4 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/1vb4_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/1vb4_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 13:53, 7 February 2016

2016-02-07T13:53:27Z

←Older revision		Revision as of 13:53, 7 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vb4 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:06, 10 September 2015

2015-09-10T02:06:56Z

←Older revision		Revision as of 02:06, 10 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smv\|1smv]], [[1vb2\|1vb2]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smv\|1smv]], [[1vb2\|1vb2]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [http://www.ebi.ac.uk/pdbsum/1vb4 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [http://pdbe.org/1vb4 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [http://www.ebi.ac.uk/pdbsum/1vb4 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1vb4" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 14:01, 6 January 2015

2015-01-06T14:01:13Z

←Older revision		Revision as of 14:01, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smv\|1smv]], [[1vb2\|1vb2]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smv\|1smv]], [[1vb2\|1vb2]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [http://www.ebi.ac.uk/pdbsum/1vb4 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [http://www.ebi.ac.uk/pdbsum/1vb4 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Sesbania mosaic virus]]		[[Category: Sesbania mosaic virus]]
-	[[Category: Lokesh, G L.]]	+	[[Category: Lokesh, G L]]
-	[[Category: Murthy, M R.]]	+	[[Category: Murthy, M R]]
-	[[Category: Sangita, V.]]	+	[[Category: Sangita, V]]
-	[[Category: Saravanan, V.]]	+	[[Category: Saravanan, V]]
-	[[Category: Satheshkumar, P S.]]	+	[[Category: Satheshkumar, P S]]
-	[[Category: Savithri, H S.]]	+	[[Category: Savithri, H S]]
-	[[Category: Vijay, C S.]]	+	[[Category: Vijay, C S]]
	[[Category: Deletion mutant]]		[[Category: Deletion mutant]]
	[[Category: Icosahedral virus]]		[[Category: Icosahedral virus]]
	[[Category: T=1 capsid]]		[[Category: T=1 capsid]]
	[[Category: Virus]]		[[Category: Virus]]

OCA at 21:08, 29 September 2014

2014-09-29T21:08:51Z

←Older revision		Revision as of 21:08, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1vb4.~~png~~\|~~left~~\|200px]]	+	==T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36==
		+	<StructureSection load='1vb4' size='340' side='right' caption='[[1vb4]], [[Resolution\|resolution]] 3.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1vb4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1VB4 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1smv\|1smv]], [[1vb2\|1vb2]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1vb4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vb4 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1vb4 RCSB], [http://www.ebi.ac.uk/pdbsum/1vb4 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vb/1vb4_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Sesbania mosaic virus particles consist of 180 coat protein subunits of 29kDa organized on a T=3 icosahedral lattice. N-terminal deletion mutants of coat protein that lack 36 (CP-NDelta36) and 65 (CP-NDelta65) residues from the N terminus, when expressed in Escherichia coli, produced similar T=1 capsids of approximate diameter 20nm. In contrast to the wild-type particles, these contain only 60 copies of the truncated protein subunits (T=1). CP-NDelta65 lacks the "beta-annulus" believed to be responsible for the error-free assembly of T=3 particles. Though the CP-NDelta36 mutant has the beta-annulus segment, it does not form a T=3 capsid, presumably because it lacks an arginine-rich motif found close to the amino terminus. Both CP-NDelta36 and CP-NDelta65 T=1 capsids retain many key features of the T=3 quaternary structure. Calcium binding geometries at the coat protein interfaces in these two particles are also nearly identical. When the conserved aspartate residues that coordinate the calcium, D146 and D149 in the CP-NDelta65, were mutated to asparagine (CP-NDelta65-D146N-D149N), the subunits assembled into T=1 particles but failed to bind calcium ions. The structure of this mutant revealed particles that were slightly expanded. The analysis of the structures of these mutant capsids suggests that although calcium binding contributes substantially to the stability of T=1 particles, it is not mandatory for their assembly. In contrast, the presence of a large fraction of the amino-terminal arm including sequences that precede the beta-annulus and the conserved D149 appear to be indispensable for the error-free assembly of T=3 particles.

-	~~{{STRUCTURE_1vb4\| PDB~~=~~1vb4 \| SCENE~~= }}	+	T=1 capsid structures of Sesbania mosaic virus coat protein mutants: determinants of T=3 and T=1 capsid assembly.,Sangita V, Lokesh GL, Satheshkumar PS, Vijay CS, Saravanan V, Savithri HS, Murthy MR J Mol Biol. 2004 Sep 17;342(3):987-99. PMID:15342251<ref>PMID:15342251</ref>

-	~~===T=1 capsid structure~~ of ~~Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15342251}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1vb4]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015342251<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Sesbania mosaic virus]]		[[Category: Sesbania mosaic virus]]
	[[Category: Lokesh, G L.]]		[[Category: Lokesh, G L.]]

OCA: Protected "1vb4" [edit=sysop:move=sysop]

2013-01-05T12:11:54Z

Protected "1vb4" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:11, 5 January 2013

OCA at 12:11, 5 January 2013

2013-01-05T12:11:50Z

←Older revision		Revision as of 12:11, 5 January 2013
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-	{{Seed}}
	[[Image:1vb4.png\|left\|200px]]		[[Image:1vb4.png\|left\|200px]]

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	{{STRUCTURE_1vb4\| PDB=1vb4 \| SCENE= }}		{{STRUCTURE_1vb4\| PDB=1vb4 \| SCENE= }}

	===T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36===		===T=1 capsid structure of Sesbania mosaic virus coat protein deletion mutant CP-N(delta)36===

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	{{ABSTRACT_PUBMED_15342251}}		{{ABSTRACT_PUBMED_15342251}}

	==About this Structure==		==About this Structure==
-	~~1VB4~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA].	+	[[1vb4]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sesbania_mosaic_virus Sesbania mosaic virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VB4 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15342251~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015342251</ref><references group="xtra"/>
	[[Category: Sesbania mosaic virus]]		[[Category: Sesbania mosaic virus]]
	[[Category: Lokesh, G L.]]		[[Category: Lokesh, G L.]]
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	[[Category: Icosahedral virus]]		[[Category: Icosahedral virus]]
	[[Category: T=1 capsid]]		[[Category: T=1 capsid]]
-		+	[[Category: Virus]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 14:14:59 2009''~~	+