1xrd - Revision history

OCA at 07:57, 15 May 2024

2024-05-15T07:57:12Z

←Older revision		Revision as of 07:57, 15 May 2024
Line 1:		Line 1:

	==Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum==		==Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum==
-	<StructureSection load='1xrd' size='340' side='right'caption='[[1xrd~~]], [[NMR_Ensembles_of_Models \| 10 NMR models~~]]' scene=''>	+	<StructureSection load='1xrd' size='340' side='right'caption='[[1xrd]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XRD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XRD FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'>[[1wrg\|1wrg]]</div~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [https://pdbe.org/1xrd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [https://www.ebi.ac.uk/pdbsum/1xrd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xrd ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [https://pdbe.org/1xrd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [https://www.ebi.ac.uk/pdbsum/1xrd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xrd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/LHA_RHORU LHA_RHORU]] Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	+	[https://www.uniprot.org/uniprot/LHA_RHORU LHA_RHORU] Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 34:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Rhodospirillum rubrum]]		[[Category: Rhodospirillum rubrum]]
-	[[Category: Gokan, K]]	+	[[Category: Gokan K]]
-	[[Category: Kobayashi, M]]	+	[[Category: Kobayashi M]]
-	[[Category: Nozawa, T]]	+	[[Category: Nozawa T]]
-	[[Category: Wang, Z Y]]	+	[[Category: Wang Z-Y]]
-	~~[[Category: Light-harvesting]]~~	+
-	~~[[Category: Membrane protein]]~~	+
-	~~[[Category: Membrane spanning helix]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Pigment binding~~]]	+

OCA at 16:18, 3 November 2021

2021-11-03T16:18:30Z

←Older revision		Revision as of 16:18, 3 November 2021
Line 3:		Line 3:
	<StructureSection load='1xrd' size='340' side='right'caption='[[1xrd]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='1xrd' size='340' side='right'caption='[[1xrd]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XRD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XRD FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wrg\|1wrg]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1wrg\|1wrg]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [~~http~~://pdbe.org/1xrd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xrd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xrd ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [https://pdbe.org/1xrd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [https://www.ebi.ac.uk/pdbsum/1xrd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xrd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/LHA_RHORU LHA_RHORU]] Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	+	[[https://www.uniprot.org/uniprot/LHA_RHORU LHA_RHORU]] Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 17:21, 22 January 2020

2020-01-22T17:21:36Z

←Older revision		Revision as of 17:21, 22 January 2020
Line 1:		Line 1:

	==Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum==		==Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum==
-	<StructureSection load='1xrd' size='340' side='right' caption='[[1xrd]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>	+	<StructureSection load='1xrd' size='340' side='right'caption='[[1xrd]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Rhodospirillum rubrum]]		[[Category: Rhodospirillum rubrum]]
	[[Category: Gokan, K]]		[[Category: Gokan, K]]

OCA at 07:06, 18 April 2018

2018-04-18T07:06:14Z

←Older revision		Revision as of 07:06, 18 April 2018
Line 1:		Line 1:
		+
	==Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum==		==Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum==
	<StructureSection load='1xrd' size='340' side='right' caption='[[1xrd]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='1xrd' size='340' side='right' caption='[[1xrd]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wrg\|1wrg]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wrg\|1wrg]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [http://pdbe.org/1xrd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [http://www.ebi.ac.uk/pdbsum/1xrd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [http://pdbe.org/1xrd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [http://www.ebi.ac.uk/pdbsum/1xrd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xrd ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xr/1xrd_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xr/1xrd_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xrd ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:49, 11 September 2015

2015-09-11T12:49:15Z

←Older revision		Revision as of 12:49, 11 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wrg\|1wrg]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wrg\|1wrg]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [http://www.ebi.ac.uk/pdbsum/1xrd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [http://pdbe.org/1xrd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [http://www.ebi.ac.uk/pdbsum/1xrd PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1xrd" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 16:40, 25 December 2014

2014-12-25T16:40:51Z

←Older revision		Revision as of 16:40, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wrg\|1wrg]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wrg\|1wrg]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [http://www.ebi.ac.uk/pdbsum/1xrd PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [http://www.ebi.ac.uk/pdbsum/1xrd PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LHA_RHORU LHA_RHORU]] Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Rhodospirillum rubrum]]		[[Category: Rhodospirillum rubrum]]
-	[[Category: Gokan, K.]]	+	[[Category: Gokan, K]]
-	[[Category: Kobayashi, M.]]	+	[[Category: Kobayashi, M]]
-	[[Category: Nozawa, T.]]	+	[[Category: Nozawa, T]]
-	[[Category: Wang, Z Y.]]	+	[[Category: Wang, Z Y]]
	[[Category: Light-harvesting]]		[[Category: Light-harvesting]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]

OCA at 19:54, 29 September 2014

2014-09-29T19:54:38Z

←Older revision		Revision as of 19:54, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1xrd.~~png~~\|~~left~~\|200px]]	+	==Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum==
		+	<StructureSection load='1xrd' size='340' side='right' caption='[[1xrd]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XRD FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1wrg\|1wrg]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xrd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xrd OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xrd RCSB], [http://www.ebi.ac.uk/pdbsum/1xrd PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xr/1xrd_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We have determined the solution structures of the core light-harvesting (LH1) alpha and beta-polypeptides from wild-type purple photosynthetic bacterium Rhodospirillum rubrum using multidimensional NMR spectroscopy. The two polypeptides form stable alpha helices in organic solution. The structure of alpha-polypeptide consists of a long helix of 32 amino acid residues over the central transmembrane domain and a short helical segment at the N terminus that is followed by a three-residue loop. Pigment-coordinating histidine residue (His29) in the alpha-polypeptide is located near the middle of the central helix. The structure of beta-polypeptide shows a single helix of 32 amino acid residues in the membrane-spanning region with the pigment-coordinating histidine residue (His38) at a position close to the C-terminal end of the helix. Strong hydrogen bonds have been identified for the backbone amide protons over the central helical regions, indicating a rigid property of the two polypeptides. The overall structures of the R.rubrum LH1 alpha and beta-polypeptides are different from those previously reported for the LH1 beta-polypeptide of Rhodobacter sphaeroides, but are very similar to the structures of the corresponding LH2 alpha and beta-polypeptides determined by X-ray crystallography. A model constructed for the structural subunit (B820) of LH1 complex using the solution structures reveals several important features on the interactions between the LH1 alpha and beta-polypeptides. The significance of the N-terminal regions of the two polypeptides for stabilizing both B820 and LH1 complexes, as clarified by many experiments, may be attributed to the interactions between the short N-terminal helix (Trp2-Gln6) of alpha-polypeptide and a GxxxG motif in the beta-polypeptide.

-	~~{{STRUCTURE_1xrd\| PDB=1xrd \| SCENE= }}~~	+	Solution structures of the core light-harvesting alpha and beta polypeptides from Rhodospirillum rubrum: implications for the pigment-protein and protein-protein interactions.,Wang ZY, Gokan K, Kobayashi M, Nozawa T J Mol Biol. 2005 Mar 25;347(2):465-77. Epub 2005 Jan 25. PMID:15740753<ref>PMID:15740753</ref>

-	~~===Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15740753}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1xrd]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015740753<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Rhodospirillum rubrum]]		[[Category: Rhodospirillum rubrum]]
	[[Category: Gokan, K.]]		[[Category: Gokan, K.]]

OCA: Protected "1xrd" [edit=sysop:move=sysop]

2013-01-05T13:18:48Z

Protected "1xrd" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:18, 5 January 2013

OCA at 13:18, 5 January 2013

2013-01-05T13:18:46Z

←Older revision		Revision as of 13:18, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1xrd.png\|left\|200px]]		[[Image:1xrd.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xrd", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1xrd\| PDB=1xrd \| SCENE= }}		{{STRUCTURE_1xrd\| PDB=1xrd \| SCENE= }}

	===Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum===		===Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15740753}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15740753 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15740753}}		{{ABSTRACT_PUBMED_15740753}}

	==About this Structure==		==About this Structure==
-	~~1XRD~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA].	+	[[1xrd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15740753~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015740753</ref><references group="xtra"/>
	[[Category: Rhodospirillum rubrum]]		[[Category: Rhodospirillum rubrum]]
	[[Category: Gokan, K.]]		[[Category: Gokan, K.]]
Line 30:		Line 18:
	[[Category: Wang, Z Y.]]		[[Category: Wang, Z Y.]]
	[[Category: Light-harvesting]]		[[Category: Light-harvesting]]
		+	[[Category: Membrane protein]]
	[[Category: Membrane spanning helix]]		[[Category: Membrane spanning helix]]
	[[Category: Photosynthesis]]		[[Category: Photosynthesis]]
	[[Category: Pigment binding]]		[[Category: Pigment binding]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:01:06 2009''

OCA at 20:01, 17 February 2009

2009-02-17T20:01:07Z

←Older revision		Revision as of 20:01, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1XRD is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA].	+	1XRD is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Rhodospirillum_rubrum Rhodospirillum rubrum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XRD OCA].

	==Reference==		==Reference==
-	Solution structures of the core light-harvesting alpha and beta polypeptides from Rhodospirillum rubrum: implications for the pigment-protein and protein-protein interactions., Wang ZY, Gokan K, Kobayashi M, Nozawa T, J Mol Biol. 2005 Mar 25;347(2):465-77. Epub 2005 Jan 25. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15740753 15740753]~~	+	<ref group="xtra">PMID:15740753</ref><references group="xtra"/>
	[[Category: Rhodospirillum rubrum]]		[[Category: Rhodospirillum rubrum]]
-	[[Category: Single protein]]
	[[Category: Gokan, K.]]		[[Category: Gokan, K.]]
	[[Category: Kobayashi, M.]]		[[Category: Kobayashi, M.]]
Line 35:		Line 34:
	[[Category: Pigment binding]]		[[Category: Pigment binding]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 29 06~~:14:~~35 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:01:06 2009''