1xsq - Revision history

OCA at 07:57, 15 May 2024

2024-05-15T07:57:49Z

←Older revision		Revision as of 07:57, 15 May 2024
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	<StructureSection load='1xsq' size='340' side='right'caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1xsq' size='340' side='right'caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~562~~ "~~Bacillus coli~~" ~~Migula 1895])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[http://en.wikipedia.org/wiki/Ureidoglycolate_amidohydrolase Ureidoglycolate amidohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.116 3.5.1.116]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [https://pdbe.org/1xsq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [https://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsq ProSAT], [https://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [~~http~~://pdbe.org/1xsq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsq ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/ALLA_ECOLI ALLA_ECOLI]] Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the anaerobic utilization of allantoin as sole nitrogen source. Reinforces the induction of genes involved in the degradation of allantoin and glyoxylate by producing glyoxylate.<ref>PMID:10601204</ref> <ref>PMID:24107613</ref>	+	[https://www.uniprot.org/uniprot/ALLA_ECOLI ALLA_ECOLI] Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the anaerobic utilization of allantoin as sole nitrogen source. Reinforces the induction of genes involved in the degradation of allantoin and glyoxylate by producing glyoxylate.<ref>PMID:10601204</ref> <ref>PMID:24107613</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Ureidoglycolate amidohydrolase]]~~	+	[[Category: Abashidze M]]
-	[[Category: Abashidze, M]]	+	[[Category: Acton TB]]
-	[[Category: Acton~~, T B~~]]	+	[[Category: Hunt JF]]
-	[[Category: Hunt~~, J F~~]]	+	[[Category: Kuzin AP]]
-	[[Category: Kuzin~~, A P~~]]	+	[[Category: Ma L-C]]
-	[[Category: Ma, L C]]	+	[[Category: Montelione GT]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Tong L]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Vorobiev SM]]
-	[[Category: Tong, L]]	+	[[Category: Xiao R]]
-	[[Category: Vorobiev~~, S M~~]]	+
-	[[Category: Xiao, R]]	+
-	~~[[Category: Et81]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Nesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 10:18, 6 January 2021

2021-01-06T10:18:53Z

←Older revision		Revision as of 10:18, 6 January 2021
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	==Crystal structure of ureidoglycolate hydrolase from E.coli. Northeast Structural Genomics Consortium target ET81.==		==Crystal structure of ureidoglycolate hydrolase from E.coli. Northeast Structural Genomics Consortium target ET81.==
-	<StructureSection load='1xsq' size='340' side='right' caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='1xsq' size='340' side='right'caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ureidoglycolate_amidohydrolase Ureidoglycolate amidohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.116 3.5.1.116] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ureidoglycolate_amidohydrolase Ureidoglycolate amidohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.116 3.5.1.116] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://pdbe.org/1xsq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsq ProSAT], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://pdbe.org/1xsq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsq ProSAT], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Ureidoglycolate amidohydrolase]]		[[Category: Ureidoglycolate amidohydrolase]]
	[[Category: Abashidze, M]]		[[Category: Abashidze, M]]

OCA at 07:38, 18 April 2018

2018-04-18T07:38:20Z

←Older revision		Revision as of 07:38, 18 April 2018
Line 1:		Line 1:
		+
	==Crystal structure of ureidoglycolate hydrolase from E.coli. Northeast Structural Genomics Consortium target ET81.==		==Crystal structure of ureidoglycolate hydrolase from E.coli. Northeast Structural Genomics Consortium target ET81.==
	<StructureSection load='1xsq' size='340' side='right' caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1xsq' size='340' side='right' caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ureidoglycolate_amidohydrolase Ureidoglycolate amidohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.116 3.5.1.116] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ureidoglycolate_amidohydrolase Ureidoglycolate amidohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.116 3.5.1.116] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://pdbe.org/1xsq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://pdbe.org/1xsq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsq ProSAT], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xsq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 08:53, 11 September 2015

2015-09-11T08:53:57Z

←Older revision		Revision as of 08:53, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1xsq' size='340' side='right' caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1xsq' size='340' side='right' caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/~~Ureidoglycolate_hydrolase~~ Ureidoglycolate ~~hydrolase~~], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.19 3.5.3.19] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ureidoglycolate_amidohydrolase Ureidoglycolate amidohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.116 3.5.1.116] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://pdbe.org/1xsq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
-	[[Category: Ureidoglycolate ~~hydrolase~~]]	+	[[Category: Ureidoglycolate amidohydrolase]]
	[[Category: Abashidze, M]]		[[Category: Abashidze, M]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]

OCA at 14:07, 25 December 2014

2014-12-25T14:07:54Z

←Older revision		Revision as of 14:07, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ureidoglycolate_hydrolase Ureidoglycolate hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.19 3.5.3.19] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ureidoglycolate_hydrolase Ureidoglycolate hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.19 3.5.3.19] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ALLA_ECOLI ALLA_ECOLI]] Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the anaerobic utilization of allantoin as sole nitrogen source. Reinforces the induction of genes involved in the degradation of allantoin and glyoxylate by producing glyoxylate.<ref>PMID:10601204</ref> <ref>PMID:24107613</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Ureidoglycolate hydrolase]]		[[Category: Ureidoglycolate hydrolase]]
-	[[Category: Abashidze, M.]]	+	[[Category: Abashidze, M]]
-	[[Category: Acton, T B.]]	+	[[Category: Acton, T B]]
-	[[Category: Hunt, J F.]]	+	[[Category: Hunt, J F]]
-	[[Category: Kuzin, A P.]]	+	[[Category: Kuzin, A P]]
-	[[Category: Ma, L C.]]	+	[[Category: Ma, L C]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Tong, L.]]	+	[[Category: Tong, L]]
-	[[Category: Vorobiev, S M.]]	+	[[Category: Vorobiev, S M]]
-	[[Category: Xiao, R.]]	+	[[Category: Xiao, R]]
	[[Category: Et81]]		[[Category: Et81]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: ~~Northeast structural genomics consortium]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 21:12, 29 September 2014

2014-09-29T21:12:14Z

←Older revision		Revision as of 21:12, 29 September 2014
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-	~~[[Image:1xsq.png\|left\|200px]]~~	+	==Crystal structure of ureidoglycolate hydrolase from E.coli. Northeast Structural Genomics Consortium target ET81.==
-		+	<StructureSection load='1xsq' size='340' side='right' caption='[[1xsq]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~{{STRUCTURE_1xsq\| PDB=1xsq \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSQ FirstGlance]. <br>
-	===Crystal structure of ureidoglycolate hydrolase from E.coli. Northeast Structural Genomics Consortium target ET81.===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">allA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ureidoglycolate_hydrolase Ureidoglycolate hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.19 3.5.3.19] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsq RCSB], [http://www.ebi.ac.uk/pdbsum/1xsq PDBsum], [http://www.topsan.org/Proteins/NESGC/1xsq TOPSAN]</span></td></tr>
-	[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Ureidoglycolate hydrolase]]		[[Category: Ureidoglycolate hydrolase]]

OCA: Protected "1xsq" [edit=sysop:move=sysop]

2013-01-05T12:17:05Z

Protected "1xsq" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:17, 5 January 2013

OCA at 12:17, 5 January 2013

2013-01-05T12:17:03Z

←Older revision		Revision as of 12:17, 5 January 2013
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-	{{Seed}}
	[[Image:1xsq.png\|left\|200px]]		[[Image:1xsq.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xsq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1xsq\| PDB=1xsq \| SCENE= }}		{{STRUCTURE_1xsq\| PDB=1xsq \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1XSQ~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA].	+	[[1xsq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Ureidoglycolate hydrolase]]		[[Category: Ureidoglycolate hydrolase]]
Line 28:		Line 21:
	[[Category: Xiao, R.]]		[[Category: Xiao, R.]]
	[[Category: Et81]]		[[Category: Et81]]
		+	[[Category: Hydrolase]]
	[[Category: Nesg]]		[[Category: Nesg]]
	[[Category: Northeast structural genomics consortium]]		[[Category: Northeast structural genomics consortium]]
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	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	[[Category: X-ray]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:46:15 2008''

OCA at 14:46, 16 November 2008

2008-11-16T14:46:19Z

←Older revision		Revision as of 14:46, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	1XSQ is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA].	+	1XSQ is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSQ OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Single protein]]
	[[Category: Ureidoglycolate hydrolase]]		[[Category: Ureidoglycolate hydrolase]]
	[[Category: Abashidze, M.]]		[[Category: Abashidze, M.]]
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	[[Category: X-ray]]		[[Category: X-ray]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 03~~:43:12 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:46:15 2008''

OCA at 00:43, 29 September 2008

2008-09-29T00:43:13Z

←Older revision		Revision as of 00:43, 29 September 2008
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-	[[Image:1xsq.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1xsq.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1xsq\| PDB=1xsq \| SCENE= }}		{{STRUCTURE_1xsq\| PDB=1xsq \| SCENE= }}

-	~~'''~~Crystal structure of ureidoglycolate hydrolase from E.coli. Northeast Structural Genomics Consortium target ET81.~~'''~~	+	===Crystal structure of ureidoglycolate hydrolase from E.coli. Northeast Structural Genomics Consortium target ET81.===


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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: X-ray]]		[[Category: X-ray]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 15~~:27:54 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 03:43:12 2008''