1ybm - Revision history

OCA at 08:56, 14 February 2024

2024-02-14T08:56:16Z

←Older revision		Revision as of 08:56, 14 February 2024
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	<StructureSection load='1ybm' size='340' side='right'caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1ybm' size='340' side='right'caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1YBM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBM FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NAP:NADP+NICOTINAMIDE~~-~~ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.096Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1xq6\|1xq6]]~~</~~div~~>~~</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [https://pdbe.org/1ybm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [https://www.ebi.ac.uk/pdbsum/1ybm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybm ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [~~http~~://pdbe.org/1ybm PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ybm PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybm ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Y5224_ARATH Y5224_ARATH]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath~~]]	+	[[Category: Arabidopsis thaliana]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Allard~~, S T.M~~]]	+	[[Category: Allard STM]]
-	[[Category: Bingman~~, C A~~]]	+	[[Category: Bingman CA]]
-	[[Category: Bitto, E]]	+	[[Category: Bitto E]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Phillips Jr GN]]
-	[[Category: Phillips~~, G N~~]]	+	[[Category: Smith DW]]
-	[[Category: Smith~~, D W~~]]	+	[[Category: Wesenberg GE]]
-	[[Category: Wesenberg~~, G E]]~~	+
-	~~[[Category: Cesg]]~~	+
-	~~[[Category: Nadp]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 08:43, 20 January 2021

2021-01-20T08:43:06Z

←Older revision		Revision as of 08:43, 20 January 2021
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	==X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212==		==X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212==
-	<StructureSection load='1ybm' size='340' side='right' caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='1ybm' size='340' side='right'caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YBM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1YBM FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xq6\|1xq6]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1xq6\|1xq6]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://pdbe.org/1ybm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybm ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://pdbe.org/1ybm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybm_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybm_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Arath]]		[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Allard, S T.M]]		[[Category: Allard, S T.M]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]

OCA at 11:00, 12 October 2017

2017-10-12T11:00:31Z

←Older revision		Revision as of 11:00, 12 October 2017
Line 1:		Line 1:
		+
	==X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212==		==X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212==
	<StructureSection load='1ybm' size='340' side='right' caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1ybm' size='340' side='right' caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xq6\|1xq6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xq6\|1xq6]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://pdbe.org/1ybm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://pdbe.org/1ybm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybm ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 16:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybm ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 14:32, 11 September 2015

2015-09-11T14:32:18Z

←Older revision		Revision as of 14:32, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1ybm' size='340' side='right' caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='1ybm' size='340' side='right' caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arabidopsis_thaliana Arabidopsis thaliana~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YBM FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YBM FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xq6\|1xq6]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xq6\|1xq6]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ~~Arabidopsis thaliana~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://pdbe.org/1ybm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arabidopsis thaliana~~]]	+	[[Category: Arath]]
	[[Category: Allard, S T.M]]		[[Category: Allard, S T.M]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]

OCA at 17:46, 25 December 2014

2014-12-25T17:46:08Z

←Older revision		Revision as of 17:46, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YBM FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YBM FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xq6\|1xq6]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xq6\|1xq6]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Allard, S T.M.]]	+	[[Category: Allard, S T.M]]
-	[[Category: Bingman, C A.]]	+	[[Category: Bingman, C A]]
-	[[Category: Bitto, E.]]	+	[[Category: Bitto, E]]
-	[[Category: ~~CESG, Center for Eukaryotic~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Phillips, G N.]]	+	[[Category: Phillips, G N]]
-	[[Category: Smith, D W.]]	+	[[Category: Smith, D W]]
-	[[Category: Wesenberg, G E~~.]]~~	+	[[Category: Wesenberg, G E]]
-	~~[[Category: Center for eukaryotic structural genomic~~]]	+
	[[Category: Cesg]]		[[Category: Cesg]]
	[[Category: Nadp]]		[[Category: Nadp]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 20:56, 29 September 2014

2014-09-29T20:56:14Z

←Older revision		Revision as of 20:56, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1ybm.png\|left\|200px]]~~	+	==X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212==
-		+	<StructureSection load='1ybm' size='340' side='right' caption='[[1ybm]], [[Resolution\|resolution]] 2.10Å' scene=''>
-	~~{{STRUCTURE_1ybm\| PDB=1ybm \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YBM FirstGlance]. <br>
-	===X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xq6\|1xq6]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum]</span></td></tr>
-	[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybm_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Allard, S T.M.]]		[[Category: Allard, S T.M.]]

OCA: Protected "1ybm" [edit=sysop:move=sysop]

2013-01-05T17:18:50Z

Protected "1ybm" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:18, 5 January 2013

OCA at 17:18, 5 January 2013

2013-01-05T17:18:48Z

←Older revision		Revision as of 17:18, 5 January 2013
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-	{{Seed}}
	[[Image:1ybm.png\|left\|200px]]		[[Image:1ybm.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1ybm", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1ybm\| PDB=1ybm \| SCENE= }}		{{STRUCTURE_1ybm\| PDB=1ybm \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1YBM~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA].	+	[[1ybm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA].
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Allard, S T.M.]]		[[Category: Allard, S T.M.]]
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	[[Category: Bitto, E.]]		[[Category: Bitto, E.]]
	[[Category: CESG, Center for Eukaryotic Structural Genomics.]]		[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
-	[[Category: ~~Jr.~~, G N~~.Phillips~~.]]	+	[[Category: Phillips, G N.]]
	[[Category: Smith, D W.]]		[[Category: Smith, D W.]]
	[[Category: Wesenberg, G E.]]		[[Category: Wesenberg, G E.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:36:32 2009''

OCA at 22:36, 17 February 2009

2009-02-17T22:36:34Z

←Older revision		Revision as of 22:36, 17 February 2009
Line 1:		Line 1:
-	[[Image:1ybm.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1ybm.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1ybm\| PDB=1ybm \| SCENE= }}		{{STRUCTURE_1ybm\| PDB=1ybm \| SCENE= }}

-	~~'''~~X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212~~'''~~	+	===X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212===


	==About this Structure==		==About this Structure==
-	1YBM is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA].	+	1YBM is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBM OCA].
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Single protein]]
	[[Category: Allard, S T.M.]]		[[Category: Allard, S T.M.]]
	[[Category: Bingman, C A.]]		[[Category: Bingman, C A.]]
Line 30:		Line 30:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 16~~:07:~~12 2008~~''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:36:32 2009''

OCA at 13:07, 3 May 2008

2008-05-03T13:07:13Z

←Older revision		Revision as of 13:07, 3 May 2008
Line 1:		Line 1:
	[[Image:1ybm.gif\|left\|200px]]		[[Image:1ybm.gif\|left\|200px]]

-	{{Structure	+	<!--
-	\|PDB~~= 1ybm \|SIZE=350\|CAPTION= <~~scene ~~name='initialview01'>1ybm</scene>~~, ~~resolution 2~~.~~096Å~~	+	The line below this paragraph, containing "STRUCTURE_1ybm", creates the "Structure Box" on the page.
-	~~\|SITE= <scene name='pdbsite=AC1:Nap+Binding+Site+For+Residue+A+400'>AC1</scene> and <scene name='pdbsite=AC2:Nap+Binding+Site+For+Residue+B+401'>AC2</scene>~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	~~\|LIGAND= <scene name='pdbligand=NAP:NADP+NICOTINAMIDE~~-~~ADENINE~~-~~DINUCLEOTIDE+PHOSPHATE'>NAP</scene~~>	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	\|~~ACTIVITY~~=	+	or leave the SCENE parameter empty for the default display.
-	\|~~GENE~~= ~~At5g02240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])~~	+	-->
-	~~\|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam01073 3Beta_HSD]</span>~~	+	{{STRUCTURE_1ybm\| PDB=1ybm \| SCENE= }}
-	~~\|RELATEDENTRY=[[1xq6\|1XQ6]]~~	+
-	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ybm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybm OCA], [http://www.ebi.ac.uk/pdbsum/1ybm PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ybm RCSB]</span>	+
-	}}	+

	'''X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212'''		'''X-ray structure of selenomethionyl gene product from Arabidopsis thaliana at5g02240 in space group P21212'''
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	[[Category: Smith, D W.]]		[[Category: Smith, D W.]]
	[[Category: Wesenberg, G E.]]		[[Category: Wesenberg, G E.]]
-	[[Category: ~~center~~ for eukaryotic structural genomic]]	+	[[Category: Center for eukaryotic structural genomic]]
-	[[Category: ~~cesg~~]]	+	[[Category: Cesg]]
-	[[Category: ~~nadp~~]]	+	[[Category: Nadp]]
-	[[Category: ~~protein~~ structure initiative]]	+	[[Category: Protein structure initiative]]
-	[[Category: ~~psi~~]]	+	[[Category: Psi]]
-	[[Category: ~~structural~~ genomic]]	+	[[Category: Structural genomic]]
-	[[Category: ~~unknown~~ function]]	+	[[Category: Unknown function]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 16:07:12 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 01~~:01:56 2008''	+