1yxn - Revision history

OCA at 09:00, 14 February 2024

2024-02-14T09:00:49Z

←Older revision		Revision as of 09:00, 14 February 2024
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [https://pdbe.org/1yxn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [https://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [https://pdbe.org/1yxn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [https://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Bacteriophage phi29 is one of the smallest and simplest known dsDNA phages, making it amenable to structural investigations. The three-dimensional structure of a fiberless, isometric variant has been determined to 7.9 A resolution by cryo-electron microscopy (cryo-EM), allowing the identification of alpha helices and beta sheets. Their arrangement indicates that the folds of the phi29 and bacteriophage HK97 capsid proteins are similar except for an additional immunoglobulin-like domain of the phi29 protein. An atomic model that incorporates these two domains fits well into the cryo-EM density of the T = 3, fiberless isometric phi29 particle, and cryo-EM structures of fibered isometric and fiberless prolate prohead phi29 particles at resolutions of 8.7 A and 12.7 A, respectively. Thus, phi29 joins the growing number of phages that utilize the HK97 capsid structure, suggesting that this protein fold may be as prevalent in capsids of dsDNA phages as the jelly roll fold is in eukaryotic viruses.
-
-	Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.,Morais MC, Choi KH, Koti JS, Chipman PR, Anderson DL, Rossmann MG Mol Cell. 2005 Apr 15;18(2):149-59. PMID:15837419<ref>PMID:15837419</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1yxn" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</SX>		</SX>

OCA at 18:07, 18 October 2023

2023-10-18T18:07:10Z

←Older revision		Revision as of 18:07, 18 October 2023
Line 3:		Line 3:
	<SX load='1yxn' size='340' side='right' viewer='molstar' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>		<SX load='1yxn' size='340' side='right' viewer='molstar' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bpph2 Bpph2~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YXN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_virus_phi29 Bacillus virus phi29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YXN FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 7.9Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ohg\|1ohg]]~~, [[~~1f00~~\|~~1f00~~]]~~</div></td></tr>~~	+
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=10756 BPPH2])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [https://pdbe.org/1yxn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [https://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [https://pdbe.org/1yxn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [https://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>
	</table>		</table>
Line 22:		Line 20:
	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: ~~Bpph2~~]]	+	[[Category: Bacillus virus phi29]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Anderson~~, D L~~]]	+	[[Category: Anderson DL]]
-	[[Category: Chipman~~, P R~~]]	+	[[Category: Chipman PR]]
-	[[Category: Choi~~, K H~~]]	+	[[Category: Choi KH]]
-	[[Category: Koti~~, J S~~]]	+	[[Category: Koti JS]]
-	[[Category: Morais~~, M C~~]]	+	[[Category: Morais MC]]
-	[[Category: Rossmann~~, M G]]~~	+	[[Category: Rossmann MG]]
-	~~[[Category: Bacterial immuno-globulin]]~~	+
-	~~[[Category: Big2]]~~	+
-	~~[[Category: Capsid]]~~	+
-	~~[[Category: Hk97 fold]]~~	+
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: Icosahedral virus capsid]]~~	+
-	~~[[Category: Phage]]~~	+
-	~~[[Category: Phi29]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 10:19, 12 January 2022

2022-01-12T10:19:54Z

←Older revision		Revision as of 10:19, 12 January 2022
Line 3:		Line 3:
	<SX load='1yxn' size='340' side='right' viewer='molstar' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>		<SX load='1yxn' size='340' side='right' viewer='molstar' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1YXN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YXN FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ohg\|1ohg]], [[1f00\|1f00]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ohg\|1ohg]], [[1f00\|1f00]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [~~http~~://pdbe.org/1yxn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [https://pdbe.org/1yxn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [https://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 16:43, 10 April 2020

2020-04-10T16:43:52Z

←Older revision		Revision as of 16:43, 10 April 2020
Line 3:		Line 3:
	<SX load='1yxn' size='340' side='right' viewer='molstar' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>		<SX load='1yxn' size='340' side='right' viewer='molstar' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YXN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1YXN FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ohg\|1ohg]], [[1f00\|1f00]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ohg\|1ohg]], [[1f00\|1f00]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [http://pdbe.org/1yxn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [http://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [http://pdbe.org/1yxn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [http://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 16:50, 6 March 2020

2020-03-06T16:50:52Z

←Older revision		Revision as of 16:50, 6 March 2020
Line 1:		Line 1:

	==Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29==		==Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29==
-	<~~StructureSection~~ load='1yxn' size='340' side='right'caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>	+	<SX load='1yxn' size='340' side='right' viewer='molstar' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YXN FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YXN FirstGlance]. <br>
Line 21:		Line 21:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Bpph2]]		[[Category: Bpph2]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 07:05, 6 November 2019

2019-11-06T07:05:02Z

←Older revision		Revision as of 07:05, 6 November 2019
Line 1:		Line 1:

	==Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29==		==Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29==
-	<StructureSection load='1yxn' size='340' side='right' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>	+	<StructureSection load='1yxn' size='340' side='right'caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YXN FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YXN FirstGlance]. <br>
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Bpph2]]		[[Category: Bpph2]]
		+	[[Category: Large Structures]]
	[[Category: Anderson, D L]]		[[Category: Anderson, D L]]
	[[Category: Chipman, P R]]		[[Category: Chipman, P R]]

OCA at 06:28, 25 April 2018

2018-04-25T06:28:04Z

←Older revision		Revision as of 06:28, 25 April 2018
Line 1:		Line 1:
		+
	==Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29==		==Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29==
	<StructureSection load='1yxn' size='340' side='right' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>		<StructureSection load='1yxn' size='340' side='right' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ohg\|1ohg]], [[1f00\|1f00]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ohg\|1ohg]], [[1f00\|1f00]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [http://pdbe.org/1yxn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [http://www.ebi.ac.uk/pdbsum/1yxn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [http://pdbe.org/1yxn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [http://www.ebi.ac.uk/pdbsum/1yxn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yxn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 03:03, 11 September 2015

2015-09-11T03:03:26Z

←Older revision		Revision as of 03:03, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1yxn' size='340' side='right' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>		<StructureSection load='1yxn' size='340' side='right' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_phage_phi29 Bacillus phage phi29~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YXN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpph2 Bpph2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YXN FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ohg\|1ohg]], [[1f00\|1f00]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ohg\|1ohg]], [[1f00\|1f00]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 ~~Bacillus phage phi29~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 BPPH2])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [http://www.ebi.ac.uk/pdbsum/1yxn PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [http://pdbe.org/1yxn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [http://www.ebi.ac.uk/pdbsum/1yxn PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1yxn" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus phage phi29~~]]	+	[[Category: Bpph2]]
	[[Category: Anderson, D L]]		[[Category: Anderson, D L]]
	[[Category: Chipman, P R]]		[[Category: Chipman, P R]]

OCA at 16:12, 15 January 2015

2015-01-15T16:12:31Z

←Older revision		Revision as of 16:12, 15 January 2015
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus phage phi29]]		[[Category: Bacillus phage phi29]]
-	[[Category: Anderson, D L.]]	+	[[Category: Anderson, D L]]
-	[[Category: Chipman, P R.]]	+	[[Category: Chipman, P R]]
-	[[Category: Choi, K H.]]	+	[[Category: Choi, K H]]
-	[[Category: Koti, J S.]]	+	[[Category: Koti, J S]]
-	[[Category: Morais, M C.]]	+	[[Category: Morais, M C]]
-	[[Category: Rossmann, M G.]]	+	[[Category: Rossmann, M G]]
	[[Category: Bacterial immuno-globulin]]		[[Category: Bacterial immuno-globulin]]
	[[Category: Big2]]		[[Category: Big2]]

OCA at 08:19, 8 October 2014

2014-10-08T08:19:25Z

←Older revision		Revision as of 08:19, 8 October 2014
Line 1:		Line 1:
-	[[~~Image:~~1yxn.~~png~~\|~~left~~\|~~200px~~]]	+	==Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29==
		+	<StructureSection load='1yxn' size='340' side='right' caption='[[1yxn]], [[Resolution\|resolution]] 7.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1yxn]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_phage_phi29 Bacillus phage phi29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YXN FirstGlance]. <br>
		+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNK:UNKNOWN'>UNK</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ohg\|1ohg]], [[1f00\|1f00]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10756 Bacillus phage phi29])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yxn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yxn OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yxn RCSB], [http://www.ebi.ac.uk/pdbsum/1yxn PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacteriophage phi29 is one of the smallest and simplest known dsDNA phages, making it amenable to structural investigations. The three-dimensional structure of a fiberless, isometric variant has been determined to 7.9 A resolution by cryo-electron microscopy (cryo-EM), allowing the identification of alpha helices and beta sheets. Their arrangement indicates that the folds of the phi29 and bacteriophage HK97 capsid proteins are similar except for an additional immunoglobulin-like domain of the phi29 protein. An atomic model that incorporates these two domains fits well into the cryo-EM density of the T = 3, fiberless isometric phi29 particle, and cryo-EM structures of fibered isometric and fiberless prolate prohead phi29 particles at resolutions of 8.7 A and 12.7 A, respectively. Thus, phi29 joins the growing number of phages that utilize the HK97 capsid structure, suggesting that this protein fold may be as prevalent in capsids of dsDNA phages as the jelly roll fold is in eukaryotic viruses.

-	~~{{STRUCTURE_1yxn\| PDB=1yxn \| SCENE= }}~~	+	Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.,Morais MC, Choi KH, Koti JS, Chipman PR, Anderson DL, Rossmann MG Mol Cell. 2005 Apr 15;18(2):149-59. PMID:15837419<ref>PMID:15837419</ref>

-	~~===Pseudo-atomic model of~~ a ~~fiberless isometric variant~~ of ~~bacteriophage phi29===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15837419}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[1yxn]] is a 3 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Bacillus_phage_phi29 Bacillus phage phi29]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YXN OCA].~~	+	</StructureSection>
	[[Category: Bacillus phage phi29]]		[[Category: Bacillus phage phi29]]
	[[Category: Anderson, D L.]]		[[Category: Anderson, D L.]]