1yya - Revision history

OCA at 13:38, 13 March 2024

2024-03-13T13:38:36Z

←Older revision		Revision as of 13:38, 13 March 2024
Line 3:		Line 3:
	<StructureSection load='1yya' size='340' side='right'caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1yya' size='340' side='right'caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thet8 Thet8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YYA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YYA FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~, ~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.6Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https:~~/~~/en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase]~~, ~~with EC number [https~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [https://pdbe.org/1yya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [https://www.ebi.ac.uk/pdbsum/1yya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yya ProSAT], [https://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [https://pdbe.org/1yya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [https://www.ebi.ac.uk/pdbsum/1yya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yya ProSAT], [https://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TPIS_THET8 TPIS_THET8]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Thet8]]~~	+	[[Category: Thermus thermophilus HB8]]
-	~~[[Category: Triose-phosphate isomerase~~]]	+	[[Category: Kunishima N]]
-	[[Category: Kunishima, N]]	+	[[Category: Yamamoto H]]
-	~~[[Category: Structural genomic~~]]	+
-	[[Category: Yamamoto, H]]	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Triosephosphate isomerase~~]]	+

OCA at 16:34, 3 November 2021

2021-11-03T16:34:28Z

←Older revision		Revision as of 16:34, 3 November 2021
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	<StructureSection load='1yya' size='340' side='right'caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1yya' size='340' side='right'caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YYA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YYA FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [~~http~~://pdbe.org/1yya PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1yya PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1yya ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [https://pdbe.org/1yya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [https://www.ebi.ac.uk/pdbsum/1yya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yya ProSAT], [https://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 16:34, 29 January 2020

2020-01-29T16:34:00Z

←Older revision		Revision as of 16:34, 29 January 2020
Line 1:		Line 1:

	==Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8==		==Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8==
-	<StructureSection load='1yya' size='340' side='right' caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>	+	<StructureSection load='1yya' size='340' side='right'caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YYA FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YYA FirstGlance]. <br>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thet8]]		[[Category: Thet8]]
	[[Category: Triose-phosphate isomerase]]		[[Category: Triose-phosphate isomerase]]

OCA at 06:22, 25 April 2018

2018-04-25T06:22:07Z

←Older revision		Revision as of 06:22, 25 April 2018
Line 1:		Line 1:
		+
	==Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8==		==Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8==
	<StructureSection load='1yya' size='340' side='right' caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1yya' size='340' side='right' caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [http://pdbe.org/1yya PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [http://www.ebi.ac.uk/pdbsum/1yya PDBsum], [http://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [http://pdbe.org/1yya PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [http://www.ebi.ac.uk/pdbsum/1yya PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yya ProSAT], [http://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/1yya_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/1yya_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yya ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 11:08, 11 September 2015

2015-09-11T11:08:06Z

←Older revision		Revision as of 11:08, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1yya' size='340' side='right' caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>		<StructureSection load='1yya' size='340' side='right' caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus_hb8 Thermus thermophilus hb8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YYA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YYA FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [http://www.ebi.ac.uk/pdbsum/1yya PDBsum], [http://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [http://pdbe.org/1yya PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [http://www.ebi.ac.uk/pdbsum/1yya PDBsum], [http://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermus thermophilus hb8~~]]	+	[[Category: Thet8]]
	[[Category: Triose-phosphate isomerase]]		[[Category: Triose-phosphate isomerase]]
	[[Category: Kunishima, N]]		[[Category: Kunishima, N]]

OCA at 09:54, 8 January 2015

2015-01-08T09:54:35Z

←Older revision		Revision as of 09:54, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YYA FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YYA FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [http://www.ebi.ac.uk/pdbsum/1yya PDBsum], [http://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [http://www.ebi.ac.uk/pdbsum/1yya PDBsum], [http://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]
	[[Category: Triose-phosphate isomerase]]		[[Category: Triose-phosphate isomerase]]
-	[[Category: Kunishima, N.]]	+	[[Category: Kunishima, N]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Yamamoto, H.]]	+	[[Category: Yamamoto, H]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
	[[Category: Triosephosphate isomerase]]		[[Category: Triosephosphate isomerase]]

OCA at 18:50, 29 September 2014

2014-09-29T18:50:17Z

←Older revision		Revision as of 18:50, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1yya.png\|left\|200px]]~~	+	==Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8==
-		+	<StructureSection load='1yya' size='340' side='right' caption='[[1yya]], [[Resolution\|resolution]] 1.60Å' scene=''>
-	~~{{STRUCTURE_1yya\| PDB=1yya \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YYA FirstGlance]. <br>
-	===Crystal structure of TT0473, putative Triosephosphate Isomerase from Thermus thermophilus HB8===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yya OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yya RCSB], [http://www.ebi.ac.uk/pdbsum/1yya PDBsum], [http://www.topsan.org/Proteins/RSGI/1yya TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yy/1yya_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]
	[[Category: Triose-phosphate isomerase]]		[[Category: Triose-phosphate isomerase]]

OCA: Protected "1yya" [edit=sysop:move=sysop]

2013-01-05T16:58:20Z

Protected "1yya" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:58, 5 January 2013

OCA at 16:58, 5 January 2013

2013-01-05T16:58:18Z

←Older revision		Revision as of 16:58, 5 January 2013
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-	{{Seed}}
	[[Image:1yya.png\|left\|200px]]		[[Image:1yya.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1yya\| PDB=1yya \| SCENE= }}		{{STRUCTURE_1yya\| PDB=1yya \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1YYA~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus~~ Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA].	+	[[1yya]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA].
-	[[Category: Thermus thermophilus]]	+	[[Category: Thermus thermophilus hb8]]
	[[Category: Triose-phosphate isomerase]]		[[Category: Triose-phosphate isomerase]]
	[[Category: Kunishima, N.]]		[[Category: Kunishima, N.]]
	[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]		[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
	[[Category: Yamamoto, H.]]		[[Category: Yamamoto, H.]]
		+	[[Category: Isomerase]]
	[[Category: Riken structural genomics/proteomics initiative]]		[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Triosephosphate isomerase]]		[[Category: Triosephosphate isomerase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:44:37 2008''

OCA at 08:44, 16 November 2008

2008-11-16T08:44:38Z

←Older revision		Revision as of 08:44, 16 November 2008
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	==About this Structure==		==About this Structure==
-	1YYA is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA].	+	1YYA is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YYA OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Triose-phosphate isomerase]]		[[Category: Triose-phosphate isomerase]]
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	[[Category: Triosephosphate isomerase]]		[[Category: Triosephosphate isomerase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28~~ 16:34:07 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:44:37 2008''