2a7a - Revision history

OCA at 09:11, 14 February 2024

2024-02-14T09:11:35Z

←Older revision		Revision as of 09:11, 14 February 2024
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	<StructureSection load='2a7a' size='340' side='right'caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='2a7a' size='340' side='right'caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Canavalia_virosa~~ Canavalia ~~virosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A7A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Canavalia_cathartica Canavalia cathartica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A7A FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1cnv\|1cnv]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [https://pdbe.org/2a7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [https://www.ebi.ac.uk/pdbsum/2a7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a7a ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [https://pdbe.org/2a7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [https://www.ebi.ac.uk/pdbsum/2a7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a7a ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/CONA_CANCT CONA_CANCT]] Glucose/D-mannose specific lectin.	+	[https://www.uniprot.org/uniprot/CONA_CANCT CONA_CANCT] Glucose/D-mannose specific lectin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a7a ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a7a ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Complete and highly redundant data sets were collected at different wavelengths between 0.80 and 2.65 A for a total of ten different protein and DNA model systems. The magnitude of the anomalous signal-to-noise ratio as assessed by the quotient R(anom)/R(r.i.m.) was found to be influenced by the data-collection wavelength and the nature of the anomalously scattering substructure. By utilizing simple empirical correlations, for instance between the estimated deltaF/F and the expected R(anom) or the data-collection wavelength and the expected R(r.i.m.), the wavelength at which the highest anomalous signal-to-noise ratio can be expected could be estimated even before the experiment. Almost independent of the nature of the anomalously scattering substructure and provided that no elemental X-ray absorption edge is nearby, this optimal wavelength is 2.1 A.
-
-	On the routine use of soft X-rays in macromolecular crystallography. Part III. The optimal data-collection wavelength.,Mueller-Dieckmann C, Panjikar S, Tucker PA, Weiss MS Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1263-72. Epub 2005, Aug 16. PMID:16131760<ref>PMID:16131760</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2a7a" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Concanavalin 3D structures\|Concanavalin 3D structures]]		*[[Concanavalin 3D structures\|Concanavalin 3D structures]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Canavalia ~~virosa~~]]	+	[[Category: Canavalia cathartica]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Mueller-Dieckmann, C]]	+	[[Category: Mueller-Dieckmann C]]
-	[[Category: Panjikar, S]]	+	[[Category: Panjikar S]]
-	[[Category: Tucker~~, P A~~]]	+	[[Category: Tucker PA]]
-	[[Category: Weiss~~, M S]]~~	+	[[Category: Weiss MS]]
-	~~[[Category: Lectin]]~~	+
-	~~[[Category: Metal binding protein~~]]	+

OCA at 14:37, 17 November 2021

2021-11-17T14:37:26Z

←Older revision		Revision as of 14:37, 17 November 2021
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	<StructureSection load='2a7a' size='340' side='right'caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='2a7a' size='340' side='right'caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Canavalia_virosa Canavalia virosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2A7A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Canavalia_virosa Canavalia virosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A7A FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cnv\|1cnv]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1cnv\|1cnv]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [~~http~~://pdbe.org/2a7a PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2a7a PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2a7a ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [https://pdbe.org/2a7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [https://www.ebi.ac.uk/pdbsum/2a7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a7a ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CONA_CANCT CONA_CANCT]] Glucose/D-mannose specific lectin.	+	[[https://www.uniprot.org/uniprot/CONA_CANCT CONA_CANCT]] Glucose/D-mannose specific lectin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 04:56, 13 February 2020

2020-02-13T04:56:12Z

←Older revision		Revision as of 04:56, 13 February 2020
Line 1:		Line 1:

	==On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength==		==On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength==
-	<StructureSection load='2a7a' size='340' side='right' caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='2a7a' size='340' side='right'caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Canavalia_virosa Canavalia virosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A7A FirstGlance]. <br>		<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Canavalia_virosa Canavalia virosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A7A FirstGlance]. <br>
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Concanavalin A\|Concanavalin A]]	+	*[[Concanavalin 3D structures\|Concanavalin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Canavalia virosa]]		[[Category: Canavalia virosa]]
		+	[[Category: Large Structures]]
	[[Category: Mueller-Dieckmann, C]]		[[Category: Mueller-Dieckmann, C]]
	[[Category: Panjikar, S]]		[[Category: Panjikar, S]]

OCA at 06:44, 9 May 2018

2018-05-09T06:44:38Z

←Older revision		Revision as of 06:44, 9 May 2018
Line 1:		Line 1:
		+
	==On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength==		==On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength==
	<StructureSection load='2a7a' size='340' side='right' caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='2a7a' size='340' side='right' caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Canavalia_cathartica~~ Canavalia ~~cathartica~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A7A FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Canavalia_virosa Canavalia virosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A7A FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cnv\|1cnv]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cnv\|1cnv]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [http://pdbe.org/2a7a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [http://www.ebi.ac.uk/pdbsum/2a7a PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [http://pdbe.org/2a7a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [http://www.ebi.ac.uk/pdbsum/2a7a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2a7a ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a7/2a7a_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a7/2a7a_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Canavalia ~~cathartica~~]]	+	[[Category: Canavalia virosa]]
	[[Category: Mueller-Dieckmann, C]]		[[Category: Mueller-Dieckmann, C]]
	[[Category: Panjikar, S]]		[[Category: Panjikar, S]]

OCA at 03:38, 8 February 2016

2016-02-08T03:38:35Z

←Older revision		Revision as of 03:38, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a7a ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:30, 10 September 2015

2015-09-10T07:30:28Z

←Older revision		Revision as of 07:30, 10 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cnv\|1cnv]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cnv\|1cnv]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [http://www.ebi.ac.uk/pdbsum/2a7a PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [http://pdbe.org/2a7a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [http://www.ebi.ac.uk/pdbsum/2a7a PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~CONA_CANVI CONA_CANVI~~]] Glucose/D-mannose specific lectin.	+	[[http://www.uniprot.org/uniprot/CONA_CANCT CONA_CANCT]] Glucose/D-mannose specific lectin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2a7a" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 20:18, 24 December 2014

2014-12-24T20:18:26Z

←Older revision		Revision as of 20:18, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Canavalia_cathartica Canavalia cathartica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A7A FirstGlance]. <br>		<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Canavalia_cathartica Canavalia cathartica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A7A FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cnv\|1cnv]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cnv\|1cnv]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [http://www.ebi.ac.uk/pdbsum/2a7a PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [http://www.ebi.ac.uk/pdbsum/2a7a PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CONA_CANVI CONA_CANVI]] Glucose/D-mannose specific lectin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Canavalia cathartica]]		[[Category: Canavalia cathartica]]
-	[[Category: Mueller-Dieckmann, C.]]	+	[[Category: Mueller-Dieckmann, C]]
-	[[Category: Panjikar, S.]]	+	[[Category: Panjikar, S]]
-	[[Category: Tucker, P A.]]	+	[[Category: Tucker, P A]]
-	[[Category: Weiss, M S.]]	+	[[Category: Weiss, M S]]
	[[Category: Lectin]]		[[Category: Lectin]]
	[[Category: Metal binding protein]]		[[Category: Metal binding protein]]

OCA at 04:57, 29 September 2014

2014-09-29T04:57:32Z

←Older revision		Revision as of 04:57, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2a7a.~~png~~\|~~left~~\|200px]]	+	==On the Routine Use of Soft X-Rays in Macromolecular Crystallography, Part III- The Optimal Data Collection Wavelength==
		+	<StructureSection load='2a7a' size='340' side='right' caption='[[2a7a]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2a7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Canavalia_cathartica Canavalia cathartica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A7A FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=XE:XENON'>XE</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cnv\|1cnv]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a7a OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a7a RCSB], [http://www.ebi.ac.uk/pdbsum/2a7a PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a7/2a7a_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Complete and highly redundant data sets were collected at different wavelengths between 0.80 and 2.65 A for a total of ten different protein and DNA model systems. The magnitude of the anomalous signal-to-noise ratio as assessed by the quotient R(anom)/R(r.i.m.) was found to be influenced by the data-collection wavelength and the nature of the anomalously scattering substructure. By utilizing simple empirical correlations, for instance between the estimated deltaF/F and the expected R(anom) or the data-collection wavelength and the expected R(r.i.m.), the wavelength at which the highest anomalous signal-to-noise ratio can be expected could be estimated even before the experiment. Almost independent of the nature of the anomalously scattering substructure and provided that no elemental X-ray absorption edge is nearby, this optimal wavelength is 2.1 A.

-	~~{{STRUCTURE_2a7a\| PDB=2a7a \| SCENE= }}~~	+	On the routine use of soft X-rays in macromolecular crystallography. Part III. The optimal data-collection wavelength.,Mueller-Dieckmann C, Panjikar S, Tucker PA, Weiss MS Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1263-72. Epub 2005, Aug 16. PMID:16131760<ref>PMID:16131760</ref>

-	~~===On the Routine Use of Soft X-Rays in Macromolecular Crystallography~~, ~~Part III- The Optimal Data Collection Wavelength===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16131760}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2a7a]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Canavalia_cathartica Canavalia cathartica]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA].~~	+

	==See Also==		==See Also==
	*[[Concanavalin A\|Concanavalin A]]		*[[Concanavalin A\|Concanavalin A]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:016131760<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Canavalia cathartica]]		[[Category: Canavalia cathartica]]
	[[Category: Mueller-Dieckmann, C.]]		[[Category: Mueller-Dieckmann, C.]]

OCA at 08:46, 20 October 2012

2012-10-20T08:46:37Z

←Older revision		Revision as of 08:46, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2a7a]] is a 1 chain structure ~~of [[Concanavalin A]]~~ with sequence from [http://en.wikipedia.org/wiki/Canavalia_cathartica Canavalia cathartica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA].	+	[[2a7a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Canavalia_cathartica Canavalia cathartica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A7A OCA].

	==See Also==		==See Also==

OCA: Protected "2a7a" [edit=sysop:move=sysop]

2012-07-25T20:43:17Z

Protected "2a7a" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:43, 25 July 2012