2ap9 - Revision history

OCA at 06:23, 3 April 2024

2024-04-03T06:23:33Z

←Older revision		Revision as of 06:23, 3 April 2024
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	<StructureSection load='2ap9' size='340' side='right'caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='2ap9' size='340' side='right'caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Mycto Mycto~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_CDC1551 Mycobacterium tuberculosis CDC1551]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~, ~~<scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></~~td><td class="sblockDat"~~>~~argB~~, ~~Rv1654, MT1692 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83331 MYCTO])~~<~~/td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [https://pdbe.org/2ap9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ap9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [https://pdbe.org/2ap9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ap9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/ARGB_MYCTU ARGB_MYCTU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Acetylglutamate kinase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mycto~~]]	+	[[Category: Mycobacterium tuberculosis CDC1551]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Burley SK]]
-	[[Category: Kniewel, R]]	+	[[Category: Kniewel R]]
-	[[Category: Lee, K]]	+	[[Category: Lee K]]
-	[[Category: Lima~~, C D]]~~	+	[[Category: Lima CD]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Rajashankar KR]]
-	[[Category: Rajashankar~~, K R]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: T1702]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 08:35, 27 January 2021

2021-01-27T08:35:30Z

←Older revision		Revision as of 08:35, 27 January 2021
Line 1:		Line 1:

	==Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551==		==Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551==
-	<StructureSection load='2ap9' size='340' side='right' caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='2ap9' size='340' side='right'caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Mycto Mycto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycto Mycto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83331 MYCTO])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83331 MYCTO])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [~~http~~://pdbe.org/2ap9 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ap9 ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [https://pdbe.org/2ap9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [https://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ap9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: Acetylglutamate kinase]]		[[Category: Acetylglutamate kinase]]
		+	[[Category: Large Structures]]
	[[Category: Mycto]]		[[Category: Mycto]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 06:58, 9 May 2018

2018-05-09T06:58:56Z

←Older revision		Revision as of 06:58, 9 May 2018
Line 1:		Line 1:
		+
	==Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551==		==Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551==
	<StructureSection load='2ap9' size='340' side='right' caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='2ap9' size='340' side='right' caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>
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	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83331 MYCTO])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83331 MYCTO])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [http://pdbe.org/2ap9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [http://pdbe.org/2ap9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ap9 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2ap9_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2ap9_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 16:41, 7 February 2016

2016-02-07T16:41:38Z

←Older revision		Revision as of 16:41, 7 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ap9 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 03:20, 10 September 2015

2015-09-10T03:20:04Z

←Older revision		Revision as of 03:20, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2ap9' size='340' side='right' caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='2ap9' size='340' side='right' caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mycobacterium_tuberculosis Mycobacterium tuberculosis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycto Mycto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1773 Mycobacterium tuberculosis~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83331 MYCTO])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [http://pdbe.org/2ap9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Acetylglutamate kinase]]		[[Category: Acetylglutamate kinase]]
-	[[Category: ~~Mycobacterium tuberculosis~~]]	+	[[Category: Mycto]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Kniewel, R]]		[[Category: Kniewel, R]]

OCA at 13:25, 6 November 2014

2014-11-06T13:25:32Z

←Older revision		Revision as of 13:25, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 Mycobacterium tuberculosis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 Mycobacterium tuberculosis])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 23:
	[[Category: Acetylglutamate kinase]]		[[Category: Acetylglutamate kinase]]
	[[Category: Mycobacterium tuberculosis]]		[[Category: Mycobacterium tuberculosis]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Kniewel, R.]]	+	[[Category: Kniewel, R]]
-	[[Category: Lee, K.]]	+	[[Category: Lee, K]]
-	[[Category: Lima, C D.]]	+	[[Category: Lima, C D]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Rajashankar, K R~~.]]~~	+	[[Category: Rajashankar, K R]]
-	~~[[Category: Acetylglutamate kinase~~]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Nysgxrc~~]]	+
-	[[Category: Protein structure initiative]]	+
-	~~[[Category: Psi~~]]	+
	[[Category: Signaling protein]]		[[Category: Signaling protein]]
-	[[Category: Structural genomic]]
	[[Category: T1702]]		[[Category: T1702]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 02:35, 30 September 2014

2014-09-30T02:35:49Z

←Older revision		Revision as of 02:35, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2ap9.png\|left\|200px]]~~	+	==Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551==
-		+	<StructureSection load='2ap9' size='340' side='right' caption='[[2ap9]], [[Resolution\|resolution]] 2.80Å' scene=''>
-	~~{{STRUCTURE_2ap9\| PDB=2ap9 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2ap9]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AP9 FirstGlance]. <br>
-	===Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">argB, Rv1654, MT1692 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 Mycobacterium tuberculosis])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylglutamate_kinase Acetylglutamate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.2.8 2.7.2.8] </span></td></tr>
-	[[2ap9]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ap9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ap9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ap9 RCSB], [http://www.ebi.ac.uk/pdbsum/2ap9 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2ap9 TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ap/2ap9_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Acetylglutamate kinase]]		[[Category: Acetylglutamate kinase]]
	[[Category: Mycobacterium tuberculosis]]		[[Category: Mycobacterium tuberculosis]]

OCA: Protected "2ap9" [edit=sysop:move=sysop]

2013-01-06T11:48:17Z

Protected "2ap9" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:48, 6 January 2013

OCA at 11:48, 6 January 2013

2013-01-06T11:48:15Z

←Older revision		Revision as of 11:48, 6 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2ap9.png\|left\|200px]]		[[Image:2ap9.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2ap9", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2ap9\| PDB=2ap9 \| SCENE= }}		{{STRUCTURE_2ap9\| PDB=2ap9 \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2AP9~~ is a 6 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Mycobacterium_tuberculosis_cdc1551~~ Mycobacterium tuberculosis ~~cdc1551~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA].	+	[[2ap9]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA].
	[[Category: Acetylglutamate kinase]]		[[Category: Acetylglutamate kinase]]
-	[[Category: Mycobacterium tuberculosis ~~cdc1551~~]]	+	[[Category: Mycobacterium tuberculosis]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Kniewel, R.]]		[[Category: Kniewel, R.]]
	[[Category: Lee, K.]]		[[Category: Lee, K.]]
	[[Category: Lima, C D.]]		[[Category: Lima, C D.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Rajashankar, K R.]]		[[Category: Rajashankar, K R.]]
	[[Category: Acetylglutamate kinase]]		[[Category: Acetylglutamate kinase]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi]]		[[Category: Psi]]
		+	[[Category: Signaling protein]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: T1702]]		[[Category: T1702]]
-		+	[[Category: Transferase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 18:10:56 2008''~~	+

OCA at 16:10, 16 November 2008

2008-11-16T16:10:58Z

←Older revision		Revision as of 16:10, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	2AP9 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_cdc1551 Mycobacterium tuberculosis cdc1551]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA].	+	2AP9 is a 6 chains structure of sequences from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_cdc1551 Mycobacterium tuberculosis cdc1551]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AP9 OCA].
	[[Category: Acetylglutamate kinase]]		[[Category: Acetylglutamate kinase]]
	[[Category: Mycobacterium tuberculosis cdc1551]]		[[Category: Mycobacterium tuberculosis cdc1551]]
-	[[Category: Single protein]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Kniewel, R.]]		[[Category: Kniewel, R.]]
Line 32:		Line 31:
	[[Category: T1702]]		[[Category: T1702]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 06~~:39:35 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:10:56 2008''