2bur - Revision history

OCA at 13:56, 13 December 2023

2023-12-13T13:56:02Z

←Older revision		Revision as of 13:56, 13 December 2023
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	<StructureSection load='2bur' size='340' side='right'caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2bur' size='340' side='right'caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Aciad Aciad~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BUR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_baylyi_ADP1 Acinetobacter baylyi ADP1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BUR FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>~~, ~~<scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [https://pdbe.org/2bur PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [https://www.ebi.ac.uk/pdbsum/2bur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bur ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [https://pdbe.org/2bur PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [https://www.ebi.ac.uk/pdbsum/2bur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bur ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PCXA_ACIAD PCXA_ACIAD~~]] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway. [[https://www.uniprot.org/uniprot/PCXB_ACIAD PCXB_ACIAD]~~] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway.	+	[https://www.uniprot.org/uniprot/PCXA_ACIAD PCXA_ACIAD] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aciad~~]]	+	[[Category: Acinetobacter baylyi ADP1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Protocatechuate 3,4-dioxygenase]]~~	+	[[Category: D'Argenio DA]]
-	~~[[Category:~~ Argenio~~, D A.D~~]]	+	[[Category: Lipscomb JD]]
-	[[Category: Lipscomb~~, J D~~]]	+	[[Category: Ohlendorf DH]]
-	[[Category: Ohlendorf~~, D H~~]]	+	[[Category: Ornston LN]]
-	[[Category: Ornston~~, L N~~]]	+	[[Category: Valley MP]]
-	[[Category: Valley~~, M P~~]]	+	[[Category: Vetting MW]]
-	[[Category: Vetting~~, M W]]~~	+
-	~~[[Category: Aromatic degradation]]~~	+
-	~~[[Category: Beta- sandwich]]~~	+
-	~~[[Category: Dioxygenase]]~~	+
-	~~[[Category: Mixed alpha/beta structure]]~~	+
-	~~[[Category: Non-heme iron]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 07:10, 24 February 2021

2021-02-24T07:10:58Z

←Older revision		Revision as of 07:10, 24 February 2021
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	<StructureSection load='2bur' size='340' side='right'caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2bur' size='340' side='right'caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Aciad Aciad]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2BUR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aciad Aciad]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BUR FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [~~http~~://pdbe.org/2bur PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2bur PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2bur ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [https://pdbe.org/2bur PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [https://www.ebi.ac.uk/pdbsum/2bur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bur ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PCXA_ACIAD PCXA_ACIAD]] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway. [[~~http~~://www.uniprot.org/uniprot/PCXB_ACIAD PCXB_ACIAD]] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway.	+	[[https://www.uniprot.org/uniprot/PCXA_ACIAD PCXA_ACIAD]] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway. [[https://www.uniprot.org/uniprot/PCXB_ACIAD PCXB_ACIAD]] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:

	==See Also==		==See Also==
-	*[[Dioxygenase\|Dioxygenase]]	+	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:11, 23 May 2019

2019-05-23T07:11:07Z

←Older revision		Revision as of 07:11, 23 May 2019
Line 1:		Line 1:

	==Crystal Structure Of Wild-Type Protocatechuate 3,4-Dioxygenase from Acinetobacter Sp. ADP1 in Complex with 4-hydroxybenzoate==		==Crystal Structure Of Wild-Type Protocatechuate 3,4-Dioxygenase from Acinetobacter Sp. ADP1 in Complex with 4-hydroxybenzoate==
-	<StructureSection load='2bur' size='340' side='right' caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='2bur' size='340' side='right'caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciad Aciad]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BUR FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciad Aciad]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BUR FirstGlance]. <br>
Line 38:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Aciad]]		[[Category: Aciad]]
		+	[[Category: Large Structures]]
	[[Category: Protocatechuate 3,4-dioxygenase]]		[[Category: Protocatechuate 3,4-dioxygenase]]
	[[Category: Argenio, D A.D]]		[[Category: Argenio, D A.D]]

OCA at 06:44, 16 May 2018

2018-05-16T06:44:25Z

←Older revision		Revision as of 06:44, 16 May 2018
Line 1:		Line 1:
-	==~~CRYSTAL STRUCTURE OF WILD~~-~~TYPE PROTOCATECHUATE~~ 3,4-~~DIOXYGENASE FROM ACINETOBACTER SP~~. ADP1 ~~IN COMPLEX WITH~~ 4-~~HYDROXYBENZOATE~~==	+
		+	==Crystal Structure Of Wild-Type Protocatechuate 3,4-Dioxygenase from Acinetobacter Sp. ADP1 in Complex with 4-hydroxybenzoate==
	<StructureSection load='2bur' size='340' side='right' caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2bur' size='340' side='right' caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [http://pdbe.org/2bur PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [http://www.ebi.ac.uk/pdbsum/2bur PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [http://pdbe.org/2bur PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [http://www.ebi.ac.uk/pdbsum/2bur PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bur ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bu/2bur_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bu/2bur_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 01:17, 8 February 2016

2016-02-08T01:17:38Z

←Older revision		Revision as of 01:17, 8 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bur ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 06:32, 10 September 2015

2015-09-10T06:32:27Z

←Older revision		Revision as of 06:32, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2bur' size='340' side='right' caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2bur' size='340' side='right' caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Acinetobacter_calcoaceticus Acinetobacter calcoaceticus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BUR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aciad Aciad]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BUR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [http://www.ebi.ac.uk/pdbsum/2bur PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [http://pdbe.org/2bur PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [http://www.ebi.ac.uk/pdbsum/2bur PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PCXA_ACIAD PCXA_ACIAD]] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway. [[http://www.uniprot.org/uniprot/PCXB_ACIAD PCXB_ACIAD]] Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2bur" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 33:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Acinetobacter calcoaceticus~~]]	+	[[Category: Aciad]]
	[[Category: Protocatechuate 3,4-dioxygenase]]		[[Category: Protocatechuate 3,4-dioxygenase]]
	[[Category: Argenio, D A.D]]		[[Category: Argenio, D A.D]]

OCA at 18:20, 15 January 2015

2015-01-15T18:20:57Z

←Older revision		Revision as of 18:20, 15 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_calcoaceticus Acinetobacter calcoaceticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BUR FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_calcoaceticus Acinetobacter calcoaceticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BUR FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [http://www.ebi.ac.uk/pdbsum/2bur PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [http://www.ebi.ac.uk/pdbsum/2bur PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 35:
	[[Category: Acinetobacter calcoaceticus]]		[[Category: Acinetobacter calcoaceticus]]
	[[Category: Protocatechuate 3,4-dioxygenase]]		[[Category: Protocatechuate 3,4-dioxygenase]]
-	[[Category: Argenio, D A.D.]]	+	[[Category: Argenio, D A.D]]
-	[[Category: Lipscomb, J D.]]	+	[[Category: Lipscomb, J D]]
-	[[Category: Ohlendorf, D H.]]	+	[[Category: Ohlendorf, D H]]
-	[[Category: Ornston, L N.]]	+	[[Category: Ornston, L N]]
-	[[Category: Valley, M P.]]	+	[[Category: Valley, M P]]
-	[[Category: Vetting, M W.]]	+	[[Category: Vetting, M W]]
	[[Category: Aromatic degradation]]		[[Category: Aromatic degradation]]
	[[Category: Beta- sandwich]]		[[Category: Beta- sandwich]]

OCA at 02:55, 30 September 2014

2014-09-30T02:55:00Z

←Older revision		Revision as of 02:55, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2bur.~~png~~\|~~left~~\|200px]]	+	==CRYSTAL STRUCTURE OF WILD-TYPE PROTOCATECHUATE 3,4-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 IN COMPLEX WITH 4-HYDROXYBENZOATE==
		+	<StructureSection load='2bur' size='340' side='right' caption='[[2bur]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2bur]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_calcoaceticus Acinetobacter calcoaceticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BUR FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1eo2\|1eo2]], [[1eo9\|1eo9]], [[1eoa\|1eoa]], [[1eob\|1eob]], [[1eoc\|1eoc]], [[2bum\|2bum]], [[2buq\|2buq]], [[2but\|2but]], [[2buu\|2buu]], [[2buv\|2buv]], [[2buw\|2buw]], [[2bux\|2bux]], [[2buy\|2buy]], [[2buz\|2buz]], [[2bv0\|2bv0]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protocatechuate_3,4-dioxygenase Protocatechuate 3,4-dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.3 1.13.11.3] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bur OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bur RCSB], [http://www.ebi.ac.uk/pdbsum/2bur PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bu/2bur_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The catechol dioxygenases allow a wide variety of bacteria to use aromatic compounds as carbon sources by catalyzing the key ring-opening step. These enzymes use specifically either catechol or protocatechuate (2,3-dihydroxybenozate) as their substrates; they use a bare metal ion as the sole cofactor. To learn how this family of metalloenzymes functions, a structural analysis of designed and selected mutants of these enzymes has been undertaken. Here we review the results of this analysis on the nonheme ferric iron intradiol dioxygenase protocatechuate 3,4-dioxygenase.

-	~~{{STRUCTURE_2bur\| PDB=2bur \| SCENE= }}~~	+	Biophysical analyses of designed and selected mutants of protocatechuate 3,4-dioxygenase1.,Brown CK, Vetting MW, Earhart CA, Ohlendorf DH Annu Rev Microbiol. 2004;58:555-85. PMID:15487948<ref>PMID:15487948</ref>

-	~~===CRYSTAL STRUCTURE OF WILD-TYPE PROTOCATECHUATE 3~~,~~4-DIOXYGENASE FROM ACINETOBACTER SP~~. ~~ADP1 IN COMPLEX WITH 4-HYDROXYBENZOATE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

-	~~{{ABSTRACT_PUBMED_15487948}}~~	+	==See Also==
-		+	*[[Dioxygenase\|Dioxygenase]]
-	==~~About this Structure~~==	+	== References ==
-	[[~~2bur~~]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_calcoaceticus Acinetobacter calcoaceticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA].	+	<references/>
-		+	__TOC__
-	==~~Reference~~==	+	</StructureSection>
-	<~~ref group="xtra">PMID:015487948<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Acinetobacter calcoaceticus]]		[[Category: Acinetobacter calcoaceticus]]
	[[Category: Protocatechuate 3,4-dioxygenase]]		[[Category: Protocatechuate 3,4-dioxygenase]]

OCA: Protected "2bur" [edit=sysop:move=sysop]

2013-01-06T12:05:31Z

Protected "2bur" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:05, 6 January 2013

OCA at 12:05, 6 January 2013

2013-01-06T12:05:28Z

←Older revision		Revision as of 12:05, 6 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2bur.png\|left\|200px]]		[[Image:2bur.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2bur", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2bur\| PDB=2bur \| SCENE= }}		{{STRUCTURE_2bur\| PDB=2bur \| SCENE= }}

	===CRYSTAL STRUCTURE OF WILD-TYPE PROTOCATECHUATE 3,4-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 IN COMPLEX WITH 4-HYDROXYBENZOATE===		===CRYSTAL STRUCTURE OF WILD-TYPE PROTOCATECHUATE 3,4-DIOXYGENASE FROM ACINETOBACTER SP. ADP1 IN COMPLEX WITH 4-HYDROXYBENZOATE===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15487948}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15487948 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15487948}}		{{ABSTRACT_PUBMED_15487948}}

	==About this Structure==		==About this Structure==
-	~~2BUR~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Acinetobacter_calcoaceticus Acinetobacter calcoaceticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA].	+	[[2bur]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_calcoaceticus Acinetobacter calcoaceticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BUR OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15487948~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015487948</ref><references group="xtra"/>
	[[Category: Acinetobacter calcoaceticus]]		[[Category: Acinetobacter calcoaceticus]]
	[[Category: Protocatechuate 3,4-dioxygenase]]		[[Category: Protocatechuate 3,4-dioxygenase]]
Line 33:		Line 21:
	[[Category: Vetting, M W.]]		[[Category: Vetting, M W.]]
	[[Category: Aromatic degradation]]		[[Category: Aromatic degradation]]
-	[[Category: Beta-sandwich]]	+	[[Category: Beta- sandwich]]
	[[Category: Dioxygenase]]		[[Category: Dioxygenase]]
	[[Category: Mixed alpha/beta structure]]		[[Category: Mixed alpha/beta structure]]
	[[Category: Non-heme iron]]		[[Category: Non-heme iron]]
-		+	[[Category: Oxidoreductase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 17:45:47 2009''~~	+