2cov - Revision history

OCA at 10:26, 6 September 2023

2023-09-06T10:26:46Z

←Older revision		Revision as of 10:26, 6 September 2023
Line 3:		Line 3:
	<StructureSection load='2cov' size='340' side='right'caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2cov' size='340' side='right'caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_sp.~~_xy~~-234 Alcaligenes sp. xy-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2COV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_sp._XY-234 Alcaligenes sp. XY-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2COV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [https://pdbe.org/2cov PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [https://www.ebi.ac.uk/pdbsum/2cov PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cov ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.25Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [https://pdbe.org/2cov PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [https://www.ebi.ac.uk/pdbsum/2cov PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cov ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/3XYN_ALCSP 3XYN_ALCSP]] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylotriose and xylobiose with smaller amounts of xylotetraose, xylose, xylopentaose and xylohexaose. Does not hydrolyze xylobiose, p-nitrophenyl-beta-xyloside, beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan or beta-1,4-mannan.<ref>PMID:11948152</ref> <ref>PMID:12501421</ref>	+	[https://www.uniprot.org/uniprot/3XYN_ALCSP 3XYN_ALCSP] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylotriose and xylobiose with smaller amounts of xylotetraose, xylose, xylopentaose and xylohexaose. Does not hydrolyze xylobiose, p-nitrophenyl-beta-xyloside, beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan or beta-1,4-mannan.<ref>PMID:11948152</ref> <ref>PMID:12501421</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Alcaligenes sp. xy-234]]	+	[[Category: Alcaligenes sp. XY-234]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Araki, T]]	+	[[Category: Araki T]]
-	[[Category: Hashimoto, H]]	+	[[Category: Hashimoto H]]
-	[[Category: Okazaki, F]]	+	[[Category: Okazaki F]]
-	[[Category: Sato, M]]	+	[[Category: Sato M]]
-	[[Category: Shimizu, T]]	+	[[Category: Shimizu T]]
-	[[Category: Tamai, Y]]	+	[[Category: Tamai Y]]
-	[[Category: Tamaru, Y]]	+	[[Category: Tamaru Y]]
-	~~[[Category: 3-xylanase]]~~	+
-	~~[[Category: Beta-1]]~~	+
-	~~[[Category: Carbohydrate-binding module]]~~	+
-	~~[[Category: Family 31 cbm]]~~	+
-	~~[[Category: Sugar binding protein~~]]	+

OCA at 06:59, 1 December 2021

2021-12-01T06:59:33Z

←Older revision		Revision as of 06:59, 1 December 2021
Line 3:		Line 3:
	<StructureSection load='2cov' size='340' side='right'caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2cov' size='340' side='right'caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Alcaligenes_sp._xy-234 Alcaligenes sp. xy-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2COV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_sp._xy-234 Alcaligenes sp. xy-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2COV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [~~http~~://pdbe.org/2cov PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2cov PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2cov ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [https://pdbe.org/2cov PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [https://www.ebi.ac.uk/pdbsum/2cov PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cov ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/3XYN_ALCSP 3XYN_ALCSP]] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylotriose and xylobiose with smaller amounts of xylotetraose, xylose, xylopentaose and xylohexaose. Does not hydrolyze xylobiose, p-nitrophenyl-beta-xyloside, beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan or beta-1,4-mannan.<ref>PMID:11948152</ref> <ref>PMID:12501421</ref>	+	[[https://www.uniprot.org/uniprot/3XYN_ALCSP 3XYN_ALCSP]] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylotriose and xylobiose with smaller amounts of xylotetraose, xylose, xylopentaose and xylohexaose. Does not hydrolyze xylobiose, p-nitrophenyl-beta-xyloside, beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan or beta-1,4-mannan.<ref>PMID:11948152</ref> <ref>PMID:12501421</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 11:09, 26 February 2020

2020-02-26T11:09:38Z

←Older revision		Revision as of 11:09, 26 February 2020
Line 1:		Line 1:

	==Crystal structure of CBM31 from beta-1,3-xylanase==		==Crystal structure of CBM31 from beta-1,3-xylanase==
-	<StructureSection load='2cov' size='340' side='right' caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>	+	<StructureSection load='2cov' size='340' side='right'caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp._xy-234 Alcaligenes sp. xy-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2COV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp._xy-234 Alcaligenes sp. xy-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2COV FirstGlance]. <br>
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Alcaligenes sp. xy-234]]		[[Category: Alcaligenes sp. xy-234]]
		+	[[Category: Large Structures]]
	[[Category: Araki, T]]		[[Category: Araki, T]]
	[[Category: Hashimoto, H]]		[[Category: Hashimoto, H]]

OCA at 08:39, 23 May 2018

2018-05-23T08:39:09Z

←Older revision		Revision as of 08:39, 23 May 2018
Line 1:		Line 1:
		+
	==Crystal structure of CBM31 from beta-1,3-xylanase==		==Crystal structure of CBM31 from beta-1,3-xylanase==
	<StructureSection load='2cov' size='340' side='right' caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2cov' size='340' side='right' caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp._xy-234 Alcaligenes sp. xy-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2COV FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp._xy-234 Alcaligenes sp. xy-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2COV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [http://pdbe.org/2cov PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [http://www.ebi.ac.uk/pdbsum/2cov PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [http://pdbe.org/2cov PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [http://www.ebi.ac.uk/pdbsum/2cov PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cov ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 23:42, 10 September 2015

2015-09-10T23:42:36Z

←Older revision		Revision as of 23:42, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2cov' size='340' side='right' caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='2cov' size='340' side='right' caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp. Alcaligenes sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2COV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp._xy-234 Alcaligenes sp. xy-234]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2COV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [http://www.ebi.ac.uk/pdbsum/2cov PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [http://pdbe.org/2cov PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [http://www.ebi.ac.uk/pdbsum/2cov PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~Q8RS40_9BURK Q8RS40_9BURK~~]] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylotriose and xylobiose with smaller amounts of xylotetraose, xylose, xylopentaose and xylohexaose. Does not hydrolyze xylobiose, p-nitrophenyl-beta-xyloside, beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan or beta-1,4-mannan.<ref>PMID:11948152</ref> <ref>PMID:12501421</ref>	+	[[http://www.uniprot.org/uniprot/3XYN_ALCSP 3XYN_ALCSP]] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylotriose and xylobiose with smaller amounts of xylotetraose, xylose, xylopentaose and xylohexaose. Does not hydrolyze xylobiose, p-nitrophenyl-beta-xyloside, beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan or beta-1,4-mannan.<ref>PMID:11948152</ref> <ref>PMID:12501421</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 15:		Line 15:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2cov" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Alcaligenes sp]]	+	[[Category: Alcaligenes sp. xy-234]]
	[[Category: Araki, T]]		[[Category: Araki, T]]
	[[Category: Hashimoto, H]]		[[Category: Hashimoto, H]]

OCA at 18:27, 15 January 2015

2015-01-15T18:27:57Z

←Older revision		Revision as of 18:27, 15 January 2015
Line 1:		Line 1:
-	[[~~Image~~:2cov.~~png\|left\|200px~~]]	+	==Crystal structure of CBM31 from beta-1,3-xylanase==
		+	<StructureSection load='2cov' size='340' side='right' caption='[[2cov]], [[Resolution\|resolution]] 1.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2cov]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp. Alcaligenes sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2COV FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB], [http://www.ebi.ac.uk/pdbsum/2cov PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q8RS40_9BURK Q8RS40_9BURK]] Catalyzes the hydrolysis of beta-1,3-xylan into oligosaccharides, mainly xylotriose and xylobiose with smaller amounts of xylotetraose, xylose, xylopentaose and xylohexaose. Does not hydrolyze xylobiose, p-nitrophenyl-beta-xyloside, beta-1,4-xylan, carboxymethylcellulose, curdlan, glucomannan or beta-1,4-mannan.<ref>PMID:11948152</ref> <ref>PMID:12501421</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Here, we present the crystal structure of the family 31 carbohydrate-binding module (CBM) of beta-1,3-xylanase from Alcaligenes sp. strain XY-234 (AlcCBM31) determined at a resolution of 1.25A. The AlcCBM31 shows affinity with only beta-1,3-xylan. The AlcCBM31 molecule makes a beta-sandwich structure composed of eight beta-strands with a typical immunoglobulin fold and contains two intra-molecular disulfide bonds. The folding topology of AlcCBM31 differs from that of the large majority of other CBMs, in which eight beta-strands comprise a beta-sandwich structure with a typical jelly-roll fold. AlcCBM31 shows structural similarity with CBM structures of family 34 and family 9, which also adopt structures based on immunoglobulin folds.

-	~~{{STRUCTURE_2cov\| PDB=2cov \| SCENE= }}~~	+	The first crystal structure of a family 31 carbohydrate-binding module with affinity to beta-1,3-xylan.,Hashimoto H, Tamai Y, Okazaki F, Tamaru Y, Shimizu T, Araki T, Sato M FEBS Lett. 2005 Aug 15;579(20):4324-8. PMID:16061225<ref>PMID:16061225</ref>

-	~~===Crystal structure~~ of ~~CBM31 from beta-1,3-xylanase===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16061225}}~~	+	== References ==
-		+	<references/>
-	==~~About this Structure~~==	+	__TOC__
-	~~[[2cov]] is a 6 chain structure with sequence from [http:~~//~~en.wikipedia.org/wiki/Alcaligenes_sp. Alcaligenes sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA].~~	+	</StructureSection>
-	[[Category: Alcaligenes sp.]]	+	[[Category: Alcaligenes sp]]
-	[[Category: Araki, T.]]	+	[[Category: Araki, T]]
-	[[Category: Hashimoto, H.]]	+	[[Category: Hashimoto, H]]
-	[[Category: Okazaki, F.]]	+	[[Category: Okazaki, F]]
-	[[Category: Sato, M.]]	+	[[Category: Sato, M]]
-	[[Category: Shimizu, T.]]	+	[[Category: Shimizu, T]]
-	[[Category: Tamai, Y.]]	+	[[Category: Tamai, Y]]
-	[[Category: Tamaru, Y.]]	+	[[Category: Tamaru, Y]]
	[[Category: 3-xylanase]]		[[Category: 3-xylanase]]
	[[Category: Beta-1]]		[[Category: Beta-1]]

OCA: Protected "2cov" [edit=sysop:move=sysop]

2013-01-06T10:34:17Z

Protected "2cov" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:34, 6 January 2013

OCA at 10:34, 6 January 2013

2013-01-06T10:34:14Z

←Older revision		Revision as of 10:34, 6 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2cov.png\|left\|200px]]		[[Image:2cov.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2cov", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2cov\| PDB=2cov \| SCENE= }}		{{STRUCTURE_2cov\| PDB=2cov \| SCENE= }}

	===Crystal structure of CBM31 from beta-1,3-xylanase===		===Crystal structure of CBM31 from beta-1,3-xylanase===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16061225}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16061225 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16061225}}		{{ABSTRACT_PUBMED_16061225}}

	==About this Structure==		==About this Structure==
-	~~2COV is a~~ [[~~Single protein~~]] structure of sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp. Alcaligenes sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA].	+	[[2cov]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Alcaligenes_sp. Alcaligenes sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2COV OCA].
-		+
-	~~==Reference==~~	+
-	The first crystal structure of a family 31 carbohydrate-binding module with affinity to beta-1,3-xylan., Hashimoto H, Tamai Y, Okazaki F, Tamaru Y, Shimizu T, Araki T, Sato M, FEBS Lett. 2005 Aug 15;579(20):4324-8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/16061225 16061225]	+
	[[Category: Alcaligenes sp.]]		[[Category: Alcaligenes sp.]]
-	[[Category: Single protein]]
	[[Category: Araki, T.]]		[[Category: Araki, T.]]
	[[Category: Hashimoto, H.]]		[[Category: Hashimoto, H.]]
Line 33:		Line 17:
	[[Category: Tamai, Y.]]		[[Category: Tamai, Y.]]
	[[Category: Tamaru, Y.]]		[[Category: Tamaru, Y.]]
-	[[Category: ~~Beta-1,~~3-xylanase]]	+	[[Category: 3-xylanase]]
		+	[[Category: Beta-1]]
	[[Category: Carbohydrate-binding module]]		[[Category: Carbohydrate-binding module]]
	[[Category: Family 31 cbm]]		[[Category: Family 31 cbm]]
-		+	[[Category: Sugar binding protein]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Jul 28 14:55:18 2008''~~	+

OCA at 11:55, 28 July 2008

2008-07-28T11:55:22Z

←Older revision		Revision as of 11:55, 28 July 2008
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-	[[Image:2cov.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2cov.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_2cov\| PDB=2cov \| SCENE= }}		{{STRUCTURE_2cov\| PDB=2cov \| SCENE= }}

-	~~'''~~Crystal structure of CBM31 from beta-1,3-xylanase~~'''~~	+	===Crystal structure of CBM31 from beta-1,3-xylanase===


-	~~==Overview==~~	+	<!--
-	~~Here~~, ~~we present~~ the ~~crystal structure of~~ the ~~family 31 carbohydrate-binding module~~ (~~CBM) of beta-1,3-xylanase from Alcaligenes sp. strain XY-234 (AlcCBM31) determined~~ at ~~a resolution of 1~~.~~25A~~. ~~The AlcCBM31 shows affinity with only beta-1~~,~~3-xylan~~. ~~The AlcCBM31 molecule makes a beta~~-~~sandwich structure composed of eight beta~~-strands with a typical immunoglobulin fold and contains two intra-molecular disulfide bonds. The folding topology of AlcCBM31 differs from that of the large majority of other CBMs, in which eight beta-strands comprise a beta-sandwich structure with a typical jelly-roll fold. AlcCBM31 shows structural similarity with CBM structures of family 34 and family 9, which also adopt structures based on immunoglobulin folds.	+	The line below this paragraph, {{ABSTRACT_PUBMED_16061225}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 16061225 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_16061225}}

	==About this Structure==		==About this Structure==
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	[[Category: Carbohydrate-binding module]]		[[Category: Carbohydrate-binding module]]
	[[Category: Family 31 cbm]]		[[Category: Family 31 cbm]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 22~~:41:39 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 14:55:18 2008''

OCA at 19:41, 3 May 2008

2008-05-03T19:41:40Z

←Older revision		Revision as of 19:41, 3 May 2008
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	[[Image:2cov.gif\|left\|200px]]		[[Image:2cov.gif\|left\|200px]]

-	{{Structure	+	<!--
-	\|PDB~~= 2cov \|SIZE=350\|CAPTION= <~~scene ~~name='initialview01'>2cov</scene>~~, ~~resolution 1~~.~~25Å~~	+	The line below this paragraph, containing "STRUCTURE_2cov", creates the "Structure Box" on the page.
-	~~\|SITE=~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	\|~~LIGAND~~=	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	\|~~ACTIVITY~~=	+	or leave the SCENE parameter empty for the default display.
-	~~\|GENE=~~	+	-->
-	~~\|DOMAIN=~~	+	{{STRUCTURE_2cov\| PDB=2cov \| SCENE= }}
-	~~\|RELATEDENTRY=~~	+
-	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cov FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cov OCA], [http://www.ebi.ac.uk/pdbsum/2cov PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2cov RCSB]</span>	+
-	}}	+

	'''Crystal structure of CBM31 from beta-1,3-xylanase'''		'''Crystal structure of CBM31 from beta-1,3-xylanase'''
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	[[Category: Tamai, Y.]]		[[Category: Tamai, Y.]]
	[[Category: Tamaru, Y.]]		[[Category: Tamaru, Y.]]
-	[[Category: ~~beta~~-1,3-xylanase]]	+	[[Category: Beta-1,3-xylanase]]
-	[[Category: ~~carbohydrate~~-binding module]]	+	[[Category: Carbohydrate-binding module]]
-	[[Category: ~~family~~ 31 cbm]]	+	[[Category: Family 31 cbm]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 22:41:39 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 02~~:24:36 2008''	+