2cqs - Revision history

OCA at 08:20, 25 October 2023

2023-10-25T08:20:30Z

←Older revision		Revision as of 08:20, 25 October 2023
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	<StructureSection load='2cqs' size='340' side='right'caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2cqs' size='340' side='right'caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"cellulomonas_gilvus"_(hulcher_and_king_1958)_christopherson_et_al._2013 "cellulomonas~~ gilvus~~" (hulcher and king 1958) christopherson et al. 2013~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CQS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellulomonas_gilvus Cellulomonas gilvus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CQS FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BGC:BETA~~-~~D-GLUCOSE'>BGC</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[2cqt\|2cqt]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [https://pdbe.org/2cqs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [https://www.ebi.ac.uk/pdbsum/2cqs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cqs ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [https://pdbe.org/2cqs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [https://www.ebi.ac.uk/pdbsum/2cqs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cqs ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O66264_9CELL O66264_9CELL]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Cellobiose phosphorylase~~]]	+	[[Category: Cellulomonas gilvus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fushinobu, S]]	+	[[Category: Fushinobu S]]
-	[[Category: Hayashi, K]]	+	[[Category: Hayashi K]]
-	[[Category: Hidaka, M]]	+	[[Category: Hidaka M]]
-	[[Category: Kitaoka, M]]	+	[[Category: Kitaoka M]]
-	[[Category: Shoun, H]]	+	[[Category: Shoun H]]
-	[[Category: Wakagi, T]]	+	[[Category: Wakagi T]]
-	~~[[Category: Beta-sandwich]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 06:59, 1 December 2021

2021-12-01T06:59:55Z

←Older revision		Revision as of 06:59, 1 December 2021
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	<StructureSection load='2cqs' size='340' side='right'caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2cqs' size='340' side='right'caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"cellulomonas_gilvus"_(hulcher_and_king_1958)_christopherson_et_al._2013 "cellulomonas gilvus" (hulcher and king 1958) christopherson et al. 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2CQS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"cellulomonas_gilvus"_(hulcher_and_king_1958)_christopherson_et_al._2013 "cellulomonas gilvus" (hulcher and king 1958) christopherson et al. 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CQS FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cqt\|2cqt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2cqt\|2cqt]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [~~http~~://pdbe.org/2cqs PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2cqs PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2cqs ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [https://pdbe.org/2cqs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [https://www.ebi.ac.uk/pdbsum/2cqs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cqs ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 10:44, 26 February 2020

2020-02-26T10:44:02Z

←Older revision		Revision as of 10:44, 26 February 2020
Line 1:		Line 1:

	==Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate==		==Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate==
-	<StructureSection load='2cqs' size='340' side='right' caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='2cqs' size='340' side='right'caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"cellulomonas_gilvus"_(hulcher_and_king_1958)_christopherson_et_al._2013 "cellulomonas gilvus" (hulcher and king 1958) christopherson et al. 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"cellulomonas_gilvus"_(hulcher_and_king_1958)_christopherson_et_al._2013 "cellulomonas gilvus" (hulcher and king 1958) christopherson et al. 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
		+	[[Category: Large Structures]]
	[[Category: Fushinobu, S]]		[[Category: Fushinobu, S]]
	[[Category: Hayashi, K]]		[[Category: Hayashi, K]]

OCA at 07:57, 23 May 2018

2018-05-23T07:57:50Z

←Older revision		Revision as of 07:57, 23 May 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate==		==Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate==
	<StructureSection load='2cqs' size='340' side='right' caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2cqs' size='340' side='right' caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~cellvibrio_gilvus~~"~~_hulcher_and_king_1958~~ "~~cellvibrio~~ gilvus" hulcher and king 1958]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"cellulomonas_gilvus"_(hulcher_and_king_1958)_christopherson_et_al._2013 "cellulomonas gilvus" (hulcher and king 1958) christopherson et al. 2013]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cqt\|2cqt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cqt\|2cqt]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [http://pdbe.org/2cqs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [http://www.ebi.ac.uk/pdbsum/2cqs PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [http://pdbe.org/2cqs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [http://www.ebi.ac.uk/pdbsum/2cqs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cqs ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cq/2cqs_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cq/2cqs_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cqs ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cellvibrio gilvus hulcher and king 1958]]
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
	[[Category: Fushinobu, S]]		[[Category: Fushinobu, S]]

OCA at 11:49, 11 September 2015

2015-09-11T11:49:05Z

←Older revision		Revision as of 11:49, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2cqs' size='340' side='right' caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2cqs' size='340' side='right' caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/[cellvibrio~~]_gilvus [cellvibrio]~~ gilvus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"cellvibrio_gilvus"_hulcher_and_king_1958 "cellvibrio gilvus" hulcher and king 1958]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cqt\|2cqt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cqt\|2cqt]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [http://www.ebi.ac.uk/pdbsum/2cqs PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [http://pdbe.org/2cqs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [http://www.ebi.ac.uk/pdbsum/2cqs PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2cqs" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Cellvibrio gilvus hulcher and king 1958]]
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
	[[Category: Fushinobu, S]]		[[Category: Fushinobu, S]]

OCA at 16:04, 15 January 2015

2015-01-15T16:04:34Z

←Older revision		Revision as of 16:04, 15 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/[cellvibrio]_gilvus [cellvibrio] gilvus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/[cellvibrio]_gilvus [cellvibrio] gilvus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cqt\|2cqt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cqt\|2cqt]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [http://www.ebi.ac.uk/pdbsum/2cqs PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [http://www.ebi.ac.uk/pdbsum/2cqs PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
-	[[Category: Fushinobu, S.]]	+	[[Category: Fushinobu, S]]
-	[[Category: Hayashi, K.]]	+	[[Category: Hayashi, K]]
-	[[Category: Hidaka, M.]]	+	[[Category: Hidaka, M]]
-	[[Category: Kitaoka, M.]]	+	[[Category: Kitaoka, M]]
-	[[Category: Shoun, H.]]	+	[[Category: Shoun, H]]
-	[[Category: Wakagi, T.]]	+	[[Category: Wakagi, T]]
	[[Category: Beta-sandwich]]		[[Category: Beta-sandwich]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 01:30, 30 September 2014

2014-09-30T01:30:57Z

←Older revision		Revision as of 01:30, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2cqs.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate==
		+	<StructureSection load='2cqs' size='340' side='right' caption='[[2cqs]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/[cellvibrio]_gilvus [cellvibrio] gilvus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CQS FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cqt\|2cqt]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cellobiose_phosphorylase Cellobiose phosphorylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.20 2.4.1.20] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cqs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cqs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cqs RCSB], [http://www.ebi.ac.uk/pdbsum/2cqs PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cq/2cqs_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Cellobiose phosphorylase, a member of the glycoside hydrolase family 94, catalyses the reversible phosphorolysis of cellobiose into alpha-D-glucose 1-phosphate and D-glucose with inversion of the anomeric configuration. The substrate specificity and reaction mechanism of cellobiose phosphorylase from Cellvibrio gilvus have been investigated in detail. We have determined the crystal structure of the glucose-sulphate and glucose-phosphate complexes of this enzyme at a maximal resolution of 2.0 A (1 A=0.1 nm). The phosphate ion is strongly held through several hydrogen bonds, and the configuration appears to be suitable for direct nucleophilic attack to an anomeric centre. Structural features around the sugar-donor and sugar-acceptor sites were consistent with the results of extensive kinetic studies. When we compared this structure with that of homologous chitobiose phosphorylase, we identified key residues for substrate discrimination between glucose and N-acetylglucosamine in both the sugar-donor and sugar-acceptor sites. We found that the active site pocket of cellobiose phosphorylase was covered by an additional loop, indicating that some conformational change is required upon substrate binding. Information on the three-dimensional structure of cellobiose phosphorylase will facilitate engineering of this enzyme, the application of which to practical oligosaccharide synthesis has already been established.

-	~~{{STRUCTURE_2cqs\| PDB=2cqs \| SCENE= }}~~	+	Structural dissection of the reaction mechanism of cellobiose phosphorylase.,Hidaka M, Kitaoka M, Hayashi K, Wakagi T, Shoun H, Fushinobu S Biochem J. 2006 Aug 15;398(1):37-43. PMID:16646954<ref>PMID:16646954</ref>

-	~~===Crystal Structure~~ of ~~Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16646954}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2cqs]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/[cellvibrio]_gilvus [cellvibrio] gilvus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016646954<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
	[[Category: Fushinobu, S.]]		[[Category: Fushinobu, S.]]

OCA: Protected "2cqs" [edit=sysop:move=sysop]

2013-01-06T10:45:37Z

Protected "2cqs" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:45, 6 January 2013

OCA at 10:45, 6 January 2013

2013-01-06T10:45:35Z

←Older revision		Revision as of 10:45, 6 January 2013
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-	{{Seed}}
	[[Image:2cqs.png\|left\|200px]]		[[Image:2cqs.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2cqs", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2cqs\| PDB=2cqs \| SCENE= }}		{{STRUCTURE_2cqs\| PDB=2cqs \| SCENE= }}

	===Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate===		===Crystal Structure of Cellvibrio gilvus Cellobiose Phosphorylase Crystallized from Ammonium Sulfate===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16646954}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16646954 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16646954}}		{{ABSTRACT_PUBMED_16646954}}

	==About this Structure==		==About this Structure==
-	~~2CQS~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Cellvibrio_gilvus Cellvibrio~~ gilvus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA].	+	[[2cqs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/[cellvibrio]_gilvus [cellvibrio] gilvus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CQS OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16646954~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016646954</ref><references group="xtra"/>
	[[Category: Cellobiose phosphorylase]]		[[Category: Cellobiose phosphorylase]]
-	[[Category: Cellvibrio gilvus]]
	[[Category: Fushinobu, S.]]		[[Category: Fushinobu, S.]]
	[[Category: Hayashi, K.]]		[[Category: Hayashi, K.]]
Line 34:		Line 21:
	[[Category: Beta-sandwich]]		[[Category: Beta-sandwich]]
	[[Category: Transferase]]		[[Category: Transferase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 5 08:54:04 2009''

OCA at 05:54, 5 August 2009

2009-08-05T05:54:06Z

←Older revision		Revision as of 05:54, 5 August 2009
Line 33:		Line 33:
	[[Category: Wakagi, T.]]		[[Category: Wakagi, T.]]
	[[Category: Beta-sandwich]]		[[Category: Beta-sandwich]]
		+	[[Category: Transferase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Feb 17 21~~:14:15 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Aug 5 08:54:04 2009''