2cyz - Revision history

OCA at 11:32, 22 May 2024

2024-05-22T11:32:36Z

←Older revision		Revision as of 11:32, 22 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.55Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td>~~<td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2cz0\|2cz0]]~~, ~~[[2cz1\|2cz1]]~~<~~/div></td></tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [https://pdbe.org/2cyz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [https://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyz ProSAT], [https://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [https://pdbe.org/2cyz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [https://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyz ProSAT], [https://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NHAA_RHOER NHAA_RHOER]] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides. Industrial production of acrylamide is now being developed using some of the enzymes of this class~~. [[https://www.uniprot.org/uniprot/NHAB_RHOER NHAB_RHOER]] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides~~.	+	[https://www.uniprot.org/uniprot/NHAA_RHOER NHAA_RHOER] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides. Industrial production of acrylamide is now being developed using some of the enzymes of this class.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Nitrile hydratase]]
	[[Category: Rhodococcus erythropolis]]		[[Category: Rhodococcus erythropolis]]
-	[[Category: Endo, I]]	+	[[Category: Endo I]]
-	[[Category: Hashimoto, K]]	+	[[Category: Hashimoto K]]
-	[[Category: Kamiya, N]]	+	[[Category: Kamiya N]]
-	[[Category: Kawano, Y]]	+	[[Category: Kawano Y]]
-	[[Category: Nakayama, H]]	+	[[Category: Nakayama H]]
-	[[Category: Odaka, M]]	+	[[Category: Odaka M]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Takio K]]
-	[[Category: Takio, K]]	+
-	~~[[Category: Cysteine-sulfenic acid]]~~	+
-	~~[[Category: Cysteine-sulfinic acid]]~~	+
-	~~[[Category: Hydration]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nitrile]]~~	+
-	~~[[Category: Non-hem iron]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Photo-reactive]]~~	+
-	~~[[Category: Post-translational modification]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 10:24, 8 December 2021

2021-12-08T10:24:03Z

OCA at 07:37, 4 March 2020

2020-03-04T07:37:14Z

←Older revision		Revision as of 07:37, 4 March 2020
Line 1:		Line 1:

	==photo-activation state of Fe-type NHase in anaerobic condition==		==photo-activation state of Fe-type NHase in anaerobic condition==
-	<StructureSection load='2cyz' size='340' side='right' caption='[[2cyz]], [[Resolution\|resolution]] 1.55Å' scene=''>	+	<StructureSection load='2cyz' size='340' side='right'caption='[[2cyz]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>
Line 27:		Line 27:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Nitrile hydratase]]		[[Category: Nitrile hydratase]]
	[[Category: Rhodococcus erythropolis]]		[[Category: Rhodococcus erythropolis]]

OCA at 06:17, 30 May 2018

2018-05-30T06:17:39Z

←Older revision		Revision as of 06:17, 30 May 2018
Line 1:		Line 1:
		+
	==photo-activation state of Fe-type NHase in anaerobic condition==		==photo-activation state of Fe-type NHase in anaerobic condition==
	<StructureSection load='2cyz' size='340' side='right' caption='[[2cyz]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='2cyz' size='340' side='right' caption='[[2cyz]], [[Resolution\|resolution]] 1.55Å' scene=''>
Line 7:		Line 8:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz0\|2cz0]], [[2cz1\|2cz1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz0\|2cz0]], [[2cz1\|2cz1]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [http://pdbe.org/2cyz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [http://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [http://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [http://pdbe.org/2cyz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [http://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyz ProSAT], [http://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cyz_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cyz_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 02:27, 9 February 2016

2016-02-09T02:27:26Z

←Older revision		Revision as of 02:27, 9 February 2016
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cyz ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 17:42, 10 September 2015

2015-09-10T17:42:49Z

←Older revision		Revision as of 17:42, 10 September 2015
Line 7:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz0\|2cz0]], [[2cz1\|2cz1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz0\|2cz0]], [[2cz1\|2cz1]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [http://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [http://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [http://pdbe.org/2cyz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [http://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [http://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 03:46, 25 December 2014

2014-12-25T03:46:30Z

←Older revision		Revision as of 03:46, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz0\|2cz0]], [[2cz1\|2cz1]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz0\|2cz0]], [[2cz1\|2cz1]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [http://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [http://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [http://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [http://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NHAA_RHOER NHAA_RHOER]] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides. Industrial production of acrylamide is now being developed using some of the enzymes of this class. [[http://www.uniprot.org/uniprot/NHAB_RHOER NHAB_RHOER]] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 28:
	[[Category: Nitrile hydratase]]		[[Category: Nitrile hydratase]]
	[[Category: Rhodococcus erythropolis]]		[[Category: Rhodococcus erythropolis]]
-	[[Category: Endo, I.]]	+	[[Category: Endo, I]]
-	[[Category: Hashimoto, K.]]	+	[[Category: Hashimoto, K]]
-	[[Category: Kamiya, N.]]	+	[[Category: Kamiya, N]]
-	[[Category: Kawano, Y.]]	+	[[Category: Kawano, Y]]
-	[[Category: Nakayama, H.]]	+	[[Category: Nakayama, H]]
-	[[Category: Odaka, M.]]	+	[[Category: Odaka, M]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Takio, K.]]	+	[[Category: Takio, K]]
	[[Category: Cysteine-sulfenic acid]]		[[Category: Cysteine-sulfenic acid]]
	[[Category: Cysteine-sulfinic acid]]		[[Category: Cysteine-sulfinic acid]]
Line 44:		Line 46:
	[[Category: Photo-reactive]]		[[Category: Photo-reactive]]
	[[Category: Post-translational modification]]		[[Category: Post-translational modification]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 01:40, 30 September 2014

2014-09-30T01:40:15Z

←Older revision		Revision as of 01:40, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2cyz.~~png~~\|~~left~~\|200px]]	+	==photo-activation state of Fe-type NHase in anaerobic condition==
		+	<StructureSection load='2cyz' size='340' side='right' caption='[[2cyz]], [[Resolution\|resolution]] 1.55Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz0\|2cz0]], [[2cz1\|2cz1]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [http://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [http://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/2cyz_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

-	~~{{STRUCTURE_2cyz\| PDB~~=~~2cyz \| SCENE= }}~~	+	==See Also==
-		+	*[[Nitrile hydratase\|Nitrile hydratase]]
-	~~===photo-activation state of Fe-type NHase in anaerobic condition~~===	+	__TOC__
-		+	</StructureSection>
-		+
-	~~==About this Structure==~~	+
-	[[~~2cyz~~]] ~~is a 2 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA].~~	+
	[[Category: Nitrile hydratase]]		[[Category: Nitrile hydratase]]
	[[Category: Rhodococcus erythropolis]]		[[Category: Rhodococcus erythropolis]]

OCA: Protected "2cyz" [edit=sysop:move=sysop]

2013-01-06T10:55:06Z

Protected "2cyz" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:55, 6 January 2013

OCA at 10:55, 6 January 2013

2013-01-06T10:55:04Z

←Older revision		Revision as of 10:55, 6 January 2013
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-	{{Seed}}
	[[Image:2cyz.png\|left\|200px]]		[[Image:2cyz.png\|left\|200px]]

-	<!--
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-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
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	{{STRUCTURE_2cyz\| PDB=2cyz \| SCENE= }}		{{STRUCTURE_2cyz\| PDB=2cyz \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2CYZ~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA].	+	[[2cyz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA].
	[[Category: Nitrile hydratase]]		[[Category: Nitrile hydratase]]
	[[Category: Rhodococcus erythropolis]]		[[Category: Rhodococcus erythropolis]]
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	[[Category: Cysteine-sulfinic acid]]		[[Category: Cysteine-sulfinic acid]]
	[[Category: Hydration]]		[[Category: Hydration]]
		+	[[Category: Lyase]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nitrile]]		[[Category: Nitrile]]
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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 12:05:19 2008''

←Older revision		Revision as of 10:24, 8 December 2021
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	<StructureSection load='2cyz' size='340' side='right'caption='[[2cyz]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='2cyz' size='340' side='right'caption='[[2cyz]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cyz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_erythropolis Rhodococcus erythropolis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CYZ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CSD:3-SULFINOALANINE'>CSD</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2cz0\|2cz0]], [[2cz1\|2cz1]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2cz0\|2cz0]], [[2cz1\|2cz1]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nitrile_hydratase Nitrile hydratase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.84 4.2.1.84] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [~~http~~://pdbe.org/2cyz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyz ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cyz OCA], [https://pdbe.org/2cyz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cyz RCSB], [https://www.ebi.ac.uk/pdbsum/2cyz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cyz ProSAT], [https://www.topsan.org/Proteins/RSGI/2cyz TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NHAA_RHOER NHAA_RHOER]] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides. Industrial production of acrylamide is now being developed using some of the enzymes of this class. [[~~http~~://www.uniprot.org/uniprot/NHAB_RHOER NHAB_RHOER]] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides.	+	[[https://www.uniprot.org/uniprot/NHAA_RHOER NHAA_RHOER]] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides. Industrial production of acrylamide is now being developed using some of the enzymes of this class. [[https://www.uniprot.org/uniprot/NHAB_RHOER NHAB_RHOER]] NHase catalyzes the hydration of various nitrile compounds to the corresponding amides.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]