2d94 - Revision history

OCA at 09:18, 14 February 2024

2024-02-14T09:18:39Z

←Older revision		Revision as of 09:18, 14 February 2024
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [https://pdbe.org/2d94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [https://www.ebi.ac.uk/pdbsum/2d94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d94 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [https://pdbe.org/2d94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [https://www.ebi.ac.uk/pdbsum/2d94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d94 ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Studies of the crystal structures of more than 30 synthetic DNA fragments have provided structural information about three basic forms of the double helix: A-, B- and Z-form DNA. These studies have demonstrated that the DNA double helix adopts a highly variable structure which is related to its base sequence. The extent to which such observed structures are influenced by the crystalline environment can be found by studying the same molecule in different crystalline forms. We have recently crystallized one particular oligomer in various crystal forms. Here we report the results of structural analyses of the different crystal structures and demonstrate that the DNA double helix can adopt a range of conformations in the crystalline state depending on hydration, molecular packing and temperature. These results have implications on our understanding of the influence of the environment on DNA structure, and on the modes of DNA recognition by proteins.
-
-	The conformation of the DNA double helix in the crystal is dependent on its environment.,Shakked Z, Guerstein-Guzikevich G, Eisenstein M, Frolow F, Rabinovich D Nature. 1989 Nov 23;342(6248):456-60. PMID:2586615<ref>PMID:2586615</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2d94" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 07:16, 9 August 2023

2023-08-09T07:16:05Z

←Older revision		Revision as of 07:16, 9 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D94 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D94 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [https://pdbe.org/2d94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [https://www.ebi.ac.uk/pdbsum/2d94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d94 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [https://pdbe.org/2d94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [https://www.ebi.ac.uk/pdbsum/2d94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d94 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 20:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Eisenstein, M]]	+	[[Category: Eisenstein M]]
-	[[Category: Frolow, F]]	+	[[Category: Frolow F]]
-	[[Category: Guerstein-Guzikevich, G]]	+	[[Category: Guerstein-Guzikevich G]]
-	[[Category: Rabinovich, D]]	+	[[Category: Rabinovich D]]
-	[[Category: Shakked, Z]]	+	[[Category: Shakked Z]]
-	~~[[Category: A-dna]]~~	+
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Double helix~~]]	+

OCA at 16:38, 3 November 2021

2021-11-03T16:38:20Z

←Older revision		Revision as of 16:38, 3 November 2021
Line 3:		Line 3:
	<StructureSection load='2d94' size='340' side='right'caption='[[2d94]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2d94' size='340' side='right'caption='[[2d94]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2D94 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D94 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [~~http~~://pdbe.org/2d94 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2d94 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2d94 ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [https://pdbe.org/2d94 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [https://www.ebi.ac.uk/pdbsum/2d94 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d94 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:01, 29 January 2020

2020-01-29T17:01:58Z

←Older revision		Revision as of 17:01, 29 January 2020
Line 1:		Line 1:

	==THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT==		==THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT==
-	<StructureSection load='2d94' size='340' side='right' caption='[[2d94]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='2d94' size='340' side='right'caption='[[2d94]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D94 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D94 FirstGlance]. <br>
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Eisenstein, M]]		[[Category: Eisenstein, M]]
	[[Category: Frolow, F]]		[[Category: Frolow, F]]

OCA at 06:03, 18 April 2018

2018-04-18T06:03:18Z

←Older revision		Revision as of 06:03, 18 April 2018
Line 1:		Line 1:
		+
	==THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT==		==THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT==
	<StructureSection load='2d94' size='340' side='right' caption='[[2d94]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='2d94' size='340' side='right' caption='[[2d94]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D94 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D94 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [http://pdbe.org/2d94 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [http://www.ebi.ac.uk/pdbsum/2d94 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [http://pdbe.org/2d94 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [http://www.ebi.ac.uk/pdbsum/2d94 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2d94 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:16, 11 September 2015

2015-09-11T09:16:55Z

←Older revision		Revision as of 09:16, 11 September 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D94 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D94 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [http://www.ebi.ac.uk/pdbsum/2d94 PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [http://pdbe.org/2d94 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [http://www.ebi.ac.uk/pdbsum/2d94 PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2d94" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 16:41, 15 January 2015

2015-01-15T16:41:32Z

←Older revision		Revision as of 16:41, 15 January 2015
Line 17:		Line 17:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Eisenstein, M.]]	+	[[Category: Eisenstein, M]]
-	[[Category: Frolow, F.]]	+	[[Category: Frolow, F]]
-	[[Category: Guerstein-Guzikevich, G.]]	+	[[Category: Guerstein-Guzikevich, G]]
-	[[Category: Rabinovich, D.]]	+	[[Category: Rabinovich, D]]
-	[[Category: Shakked, Z.]]	+	[[Category: Shakked, Z]]
	[[Category: A-dna]]		[[Category: A-dna]]
	[[Category: Dna]]		[[Category: Dna]]
	[[Category: Double helix]]		[[Category: Double helix]]

OCA at 08:11, 8 October 2014

2014-10-08T08:11:47Z

←Older revision		Revision as of 08:11, 8 October 2014
Line 1:		Line 1:
-	[[~~Image~~:2d94.~~png\|left\|200px~~]]	+	==THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT==
		+	<StructureSection load='2d94' size='340' side='right' caption='[[2d94]], [[Resolution\|resolution]] 1.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D94 FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d94 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d94 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d94 RCSB], [http://www.ebi.ac.uk/pdbsum/2d94 PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Studies of the crystal structures of more than 30 synthetic DNA fragments have provided structural information about three basic forms of the double helix: A-, B- and Z-form DNA. These studies have demonstrated that the DNA double helix adopts a highly variable structure which is related to its base sequence. The extent to which such observed structures are influenced by the crystalline environment can be found by studying the same molecule in different crystalline forms. We have recently crystallized one particular oligomer in various crystal forms. Here we report the results of structural analyses of the different crystal structures and demonstrate that the DNA double helix can adopt a range of conformations in the crystalline state depending on hydration, molecular packing and temperature. These results have implications on our understanding of the influence of the environment on DNA structure, and on the modes of DNA recognition by proteins.

-	~~{{STRUCTURE_2d94\| PDB=2d94 \| SCENE= }}~~	+	The conformation of the DNA double helix in the crystal is dependent on its environment.,Shakked Z, Guerstein-Guzikevich G, Eisenstein M, Frolow F, Rabinovich D Nature. 1989 Nov 23;342(6248):456-60. PMID:2586615<ref>PMID:2586615</ref>

-	~~===THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_2586615}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2d94]] is~~ a ~~1 chain structure~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=2D94 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:002586615<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Eisenstein, M.]]		[[Category: Eisenstein, M.]]
	[[Category: Frolow, F.]]		[[Category: Frolow, F.]]

OCA: Protected "2d94" [edit=sysop:move=sysop]

2013-01-06T11:08:05Z

Protected "2d94" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:08, 6 January 2013

OCA at 11:08, 6 January 2013

2013-01-06T11:08:03Z

←Older revision		Revision as of 11:08, 6 January 2013
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-	{{Seed}}
	[[Image:2d94.png\|left\|200px]]		[[Image:2d94.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2d94", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2d94\| PDB=2d94 \| SCENE= }}		{{STRUCTURE_2d94\| PDB=2d94 \| SCENE= }}

	===THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT===		===THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_2586615}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 2586615 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_2586615}}		{{ABSTRACT_PUBMED_2586615}}

	==About this Structure==		==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA].	+	[[2d94]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D94 OCA].

	==Reference==		==Reference==
-	~~The conformation of the DNA double helix in the crystal is dependent on its environment., Shakked Z, Guerstein-Guzikevich G, Eisenstein M, Frolow F, Rabinovich D, Nature. 1989 Nov 23;342(6248):456-60.~~ PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~2586615 2586615]~~	+	<ref group="xtra">PMID:002586615</ref><references group="xtra"/>
	[[Category: Eisenstein, M.]]		[[Category: Eisenstein, M.]]
	[[Category: Frolow, F.]]		[[Category: Frolow, F.]]
Line 30:		Line 18:
	[[Category: Shakked, Z.]]		[[Category: Shakked, Z.]]
	[[Category: A-dna]]		[[Category: A-dna]]
		+	[[Category: Dna]]
	[[Category: Double helix]]		[[Category: Double helix]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 29 02:35:10 2008''