2dyi - Revision history

OCA at 13:48, 13 March 2024

2024-03-13T13:48:29Z

←Older revision		Revision as of 13:48, 13 March 2024
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	<StructureSection load='2dyi' size='340' side='right'caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2dyi' size='340' side='right'caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Thet8 Thet8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DYI FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~TTHA1033 (~~[~~https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=300852 THET8])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [https://pdbe.org/2dyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [https://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dyi ProSAT], [https://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [https://pdbe.org/2dyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [https://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dyi ProSAT], [https://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/RIMM_THET8 RIMM_THET8]] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (By similarity).	+	[https://www.uniprot.org/uniprot/RIMM_THET8 RIMM_THET8] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Thet8~~]]	+	[[Category: Thermus thermophilus HB8]]
-	[[Category: Kaminishi, T]]	+	[[Category: Kaminishi T]]
-	[[Category: Kawazoe, M]]	+	[[Category: Kawazoe M]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Shirouzu M]]
-	[[Category: Shirouzu, M]]	+	[[Category: Takemoto C]]
-	[[Category: Takemoto, C]]	+	[[Category: Tatsuguchi A]]
-	[[Category: Tatsuguchi, A]]	+	[[Category: Yokoyama S]]
-	[[Category: Yokoyama, S]]	+
-	~~[[Category: 16s rrna processing]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Prc-barrel]]~~	+
-	~~[[Category: Ribosomal protein s19]]~~	+
-	~~[[Category: Ribosome]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 11:41, 10 February 2021

2021-02-10T11:41:27Z

←Older revision		Revision as of 11:41, 10 February 2021
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	==Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8==		==Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8==
-	<StructureSection load='2dyi' size='340' side='right' caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='2dyi' size='340' side='right'caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DYI FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [~~http~~://pdbe.org/2dyi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2dyi ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [https://pdbe.org/2dyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [https://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dyi ProSAT], [https://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/RIMM_THET8 RIMM_THET8]] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (By similarity).	+	[[https://www.uniprot.org/uniprot/RIMM_THET8 RIMM_THET8]] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Thet8]]		[[Category: Thet8]]
	[[Category: Kaminishi, T]]		[[Category: Kaminishi, T]]

OCA at 06:36, 6 June 2018

2018-06-06T06:36:17Z

←Older revision		Revision as of 06:36, 6 June 2018
Line 1:		Line 1:
		+
	==Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8==		==Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8==
	<StructureSection load='2dyi' size='340' side='right' caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2dyi' size='340' side='right' caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DYI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DYI FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [http://pdbe.org/2dyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [http://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [http://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [http://pdbe.org/2dyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [http://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dyi ProSAT], [http://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/2dyi_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/2dyi_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 08:22, 7 February 2016

2016-02-07T08:22:24Z

←Older revision		Revision as of 08:22, 7 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dyi ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 23:35, 9 September 2015

2015-09-09T23:35:26Z

←Older revision		Revision as of 23:35, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='2dyi' size='340' side='right' caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2dyi' size='340' side='right' caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus_hb8 Thermus thermophilus hb8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DYI FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 ~~Thermus thermophilus HB8~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 THET8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [http://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [http://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [http://pdbe.org/2dyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [http://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [http://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Thermus thermophilus hb8~~]]	+	[[Category: Thet8]]
	[[Category: Kaminishi, T]]		[[Category: Kaminishi, T]]
	[[Category: Kawazoe, M]]		[[Category: Kawazoe, M]]

OCA at 13:38, 24 December 2014

2014-12-24T13:38:07Z

←Older revision		Revision as of 13:38, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DYI FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DYI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 Thermus thermophilus HB8])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 Thermus thermophilus HB8])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [http://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [http://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [http://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [http://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RIMM_THET8 RIMM_THET8]] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]
-	[[Category: Kaminishi, T.]]	+	[[Category: Kaminishi, T]]
-	[[Category: Kawazoe, M.]]	+	[[Category: Kawazoe, M]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Shirouzu, M.]]	+	[[Category: Shirouzu, M]]
-	[[Category: Takemoto, C.]]	+	[[Category: Takemoto, C]]
-	[[Category: Tatsuguchi, A.]]	+	[[Category: Tatsuguchi, A]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: 16s rrna processing]]		[[Category: 16s rrna processing]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
Line 32:		Line 34:
	[[Category: Ribosomal protein s19]]		[[Category: Ribosomal protein s19]]
	[[Category: Ribosome]]		[[Category: Ribosome]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 02:25, 30 September 2014

2014-09-30T02:25:53Z

←Older revision		Revision as of 02:25, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:2dyi.png\|left\|200px]]~~	+	==Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8==
-		+	<StructureSection load='2dyi' size='340' side='right' caption='[[2dyi]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{STRUCTURE_2dyi\| PDB=2dyi \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DYI FirstGlance]. <br>
-	===Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8===	+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">TTHA1033 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=300852 Thermus thermophilus HB8])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dyi RCSB], [http://www.ebi.ac.uk/pdbsum/2dyi PDBsum], [http://www.topsan.org/Proteins/RSGI/2dyi TOPSAN]</span></td></tr>
-		+	<table>
-	==~~About this Structure~~==	+	== Evolutionary Conservation ==
-	[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA].	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/2dyi_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Thermus thermophilus hb8]]		[[Category: Thermus thermophilus hb8]]
	[[Category: Kaminishi, T.]]		[[Category: Kaminishi, T.]]

OCA: Protected "2dyi" [edit=sysop:move=sysop]

2013-01-06T11:38:22Z

Protected "2dyi" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:38, 6 January 2013

OCA at 11:38, 6 January 2013

2013-01-06T11:38:19Z

←Older revision		Revision as of 11:38, 6 January 2013
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-	{{Seed}}
	[[Image:2dyi.png\|left\|200px]]		[[Image:2dyi.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2dyi", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2dyi\| PDB=2dyi \| SCENE= }}		{{STRUCTURE_2dyi\| PDB=2dyi \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2DYI~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus~~ Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA].	+	[[2dyi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA].
-	[[Category: Thermus thermophilus]]	+	[[Category: Thermus thermophilus hb8]]
	[[Category: Kaminishi, T.]]		[[Category: Kaminishi, T.]]
	[[Category: Kawazoe, M.]]		[[Category: Kawazoe, M.]]
Line 28:		Line 21:
	[[Category: Prc-barrel]]		[[Category: Prc-barrel]]
	[[Category: Ribosomal protein s19]]		[[Category: Ribosomal protein s19]]
		+	[[Category: Ribosome]]
	[[Category: Riken structural genomics/proteomics initiative]]		[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:29:32 2008''

OCA at 11:29, 16 November 2008

2008-11-16T11:29:36Z

←Older revision		Revision as of 11:29, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	2DYI is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA].	+	2DYI is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DYI OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Kaminishi, T.]]		[[Category: Kaminishi, T.]]
Line 33:		Line 32:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 20~~:29:09 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 13:29:32 2008''