2dzo - Revision history

OCA at 13:48, 13 March 2024

2024-03-13T13:48:37Z

←Older revision		Revision as of 13:48, 13 March 2024
Line 3:		Line 3:
	<StructureSection load='2dzo' size='340' side='right'caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='2dzo' size='340' side='right'caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_18824 Atcc 18824~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DZO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DZO FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>~~[[~~2dzn~~\|~~2dzn~~]]~~</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [https://pdbe.org/2dzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [https://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dzo ProSAT], [https://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [https://pdbe.org/2dzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [https://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dzo ProSAT], [https://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PSD10_YEAST PSD10_YEAST]] Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC) and appears to have an overlapping role with RPN14.<ref>PMID:19412159</ref> <ref>PMID:19446322</ref> <ref>PMID:9714768</ref> [[https://www.uniprot.org/uniprot/PRS6B_YEAST PRS6B_YEAST]] The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity).	+	[https://www.uniprot.org/uniprot/PSD10_YEAST PSD10_YEAST] Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC) and appears to have an overlapping role with RPN14.<ref>PMID:19412159</ref> <ref>PMID:19446322</ref> <ref>PMID:9714768</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 18824]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Nakamura, Y~~]]	+	[[Category: Saccharomyces cerevisiae]]
-	[[Category: ~~Padmanabhan, B~~]]	+	[[Category: Nakamura Y]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Padmanabhan B]]
-	[[Category: Yokoyama, S]]	+	[[Category: Yokoyama S]]
-	~~[[Category: A-helical domain]]~~	+
-	~~[[Category: Ankyrin repeat]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Protein binding]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 17:19, 15 December 2021

2021-12-15T17:19:03Z

←Older revision		Revision as of 17:19, 15 December 2021
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	<StructureSection load='2dzo' size='340' side='right'caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='2dzo' size='340' side='right'caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2DZO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DZO FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dzn\|2dzn]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2dzn\|2dzn]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [~~http~~://pdbe.org/2dzo PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2dzo ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [https://pdbe.org/2dzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [https://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dzo ProSAT], [https://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PSD10_YEAST PSD10_YEAST]] Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC) and appears to have an overlapping role with RPN14.<ref>PMID:19412159</ref> <ref>PMID:19446322</ref> <ref>PMID:9714768</ref> [[~~http~~://www.uniprot.org/uniprot/PRS6B_YEAST PRS6B_YEAST]] The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity).	+	[[https://www.uniprot.org/uniprot/PSD10_YEAST PSD10_YEAST]] Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC) and appears to have an overlapping role with RPN14.<ref>PMID:19412159</ref> <ref>PMID:19446322</ref> <ref>PMID:9714768</ref> [[https://www.uniprot.org/uniprot/PRS6B_YEAST PRS6B_YEAST]] The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:24, 11 March 2020

2020-03-11T08:24:32Z

←Older revision		Revision as of 08:24, 11 March 2020
Line 1:		Line 1:

	==Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3==		==Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3==
-	<StructureSection load='2dzo' size='340' side='right' caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>	+	<StructureSection load='2dzo' size='340' side='right'caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 18824]]		[[Category: Atcc 18824]]
		+	[[Category: Large Structures]]
	[[Category: Nakamura, Y]]		[[Category: Nakamura, Y]]
	[[Category: Padmanabhan, B]]		[[Category: Padmanabhan, B]]

OCA at 06:41, 6 June 2018

2018-06-06T06:41:51Z

←Older revision		Revision as of 06:41, 6 June 2018
Line 1:		Line 1:
		+
	==Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3==		==Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3==
	<StructureSection load='2dzo' size='340' side='right' caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='2dzo' size='340' side='right' caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dzn\|2dzn]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dzn\|2dzn]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [http://pdbe.org/2dzo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [http://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [http://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [http://pdbe.org/2dzo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [http://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2dzo ProSAT], [http://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/2dzo_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/2dzo_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 16:37, 9 February 2016

2016-02-09T16:37:56Z

←Older revision		Revision as of 16:37, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dzo ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 00:08, 11 September 2015

2015-09-11T00:08:12Z

←Older revision		Revision as of 00:08, 11 September 2015
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	<StructureSection load='2dzo' size='340' side='right' caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='2dzo' size='340' side='right' caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Saccharomyces_cerevisiae Saccharomyces cerevisiae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dzn\|2dzn]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dzn\|2dzn]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [http://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [http://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [http://pdbe.org/2dzo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [http://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [http://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/PRS6B_YEAST PRS6B_YEAST]] The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity).	+	[[http://www.uniprot.org/uniprot/PSD10_YEAST PSD10_YEAST]] Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC) and appears to have an overlapping role with RPN14.<ref>PMID:19412159</ref> <ref>PMID:19446322</ref> <ref>PMID:9714768</ref> [[http://www.uniprot.org/uniprot/PRS6B_YEAST PRS6B_YEAST]] The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 18:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Saccharomyces cerevisiae~~]]	+	[[Category: Atcc 18824]]
	[[Category: Nakamura, Y]]		[[Category: Nakamura, Y]]
	[[Category: Padmanabhan, B]]		[[Category: Padmanabhan, B]]

OCA at 08:06, 25 December 2014

2014-12-25T08:06:51Z

←Older revision		Revision as of 08:06, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>		<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dzn\|2dzn]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dzn\|2dzn]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [http://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [http://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [http://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [http://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PRS6B_YEAST PRS6B_YEAST]] The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 19:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
-	[[Category: Nakamura, Y.]]	+	[[Category: Nakamura, Y]]
-	[[Category: Padmanabhan, B.]]	+	[[Category: Padmanabhan, B]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: A-helical domain]]		[[Category: A-helical domain]]
	[[Category: Ankyrin repeat]]		[[Category: Ankyrin repeat]]
Line 28:		Line 30:
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
	[[Category: Protein binding]]		[[Category: Protein binding]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 01:42, 30 September 2014

2014-09-30T01:42:14Z

←Older revision		Revision as of 01:42, 30 September 2014
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-	~~[[Image:2dzo.png\|left\|200px]]~~	+	==Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3==
-		+	<StructureSection load='2dzo' size='340' side='right' caption='[[2dzo]], [[Resolution\|resolution]] 3.00Å' scene=''>
-	~~{{STRUCTURE_2dzo\| PDB=2dzo \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2DZO FirstGlance]. <br>
-	===Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3===	+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2dzn\|2dzn]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dzo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2dzo RCSB], [http://www.ebi.ac.uk/pdbsum/2dzo PDBsum], [http://www.topsan.org/Proteins/RSGI/2dzo TOPSAN]</span></td></tr>
-		+	<table>
-	==~~About this Structure~~==	+	== Evolutionary Conservation ==
-	[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA].	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/2dzo_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Nakamura, Y.]]		[[Category: Nakamura, Y.]]

OCA: Protected "2dzo" [edit=sysop:move=sysop]

2013-01-06T10:56:51Z

Protected "2dzo" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:56, 6 January 2013

OCA at 10:56, 6 January 2013

2013-01-06T10:56:45Z

←Older revision		Revision as of 10:56, 6 January 2013
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-	{{Seed}}
	[[Image:2dzo.png\|left\|200px]]		[[Image:2dzo.png\|left\|200px]]

-	<!--
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-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_2dzo\| PDB=2dzo \| SCENE= }}		{{STRUCTURE_2dzo\| PDB=2dzo \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2DZO~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA].	+	[[2dzo]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DZO OCA].
	[[Category: Saccharomyces cerevisiae]]		[[Category: Saccharomyces cerevisiae]]
	[[Category: Nakamura, Y.]]		[[Category: Nakamura, Y.]]
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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 12:07:51 2008''