2e4p - Revision history

OCA at 08:34, 25 October 2023

2023-10-25T08:34:54Z

←Older revision		Revision as of 08:34, 25 October 2023
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	<StructureSection load='2e4p' size='340' side='right'caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2e4p' size='340' side='right'caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Achromobacter_georgiopolitanum Achromobacter georgiopolitanum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E4P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E4P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE+ION~~'>~~SO4~~</scene><~~/td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[2gt0\|2gt0]], [[2e4q\|2e4q]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900006:trehalose'>PRD_900006</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [https://pdbe.org/2e4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [https://www.ebi.ac.uk/pdbsum/2e4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e4p ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [https://pdbe.org/2e4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [https://www.ebi.ac.uk/pdbsum/2e4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e4p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/BPHA3_PSES1 BPHA3_PSES1]] This protein seems to be a 2Fe-2S ferredoxin.	+	[https://www.uniprot.org/uniprot/BPHA3_PSES1 BPHA3_PSES1] This protein seems to be a 2Fe-2S ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Achromobacter georgiopolitanum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Fukuda, M]]	+	[[Category: Pseudomonas sp]]
-	[[Category: Ishida, T]]	+	[[Category: Fukuda M]]
-	[[Category: Kimura, S]]	+	[[Category: Ishida T]]
-	[[Category: Kishigami, S]]	+	[[Category: Kimura S]]
-	[[Category: Senda, M]]	+	[[Category: Kishigami S]]
-	[[Category: Senda, T]]	+	[[Category: Senda M]]
-	~~[[Category: Electron transport~~]]	+	[[Category: Senda T]]

OCA at 17:20, 15 December 2021

2021-12-15T17:20:38Z

←Older revision		Revision as of 17:20, 15 December 2021
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	<StructureSection load='2e4p' size='340' side='right'caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2e4p' size='340' side='right'caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Achromobacter_georgiopolitanum Achromobacter georgiopolitanum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2E4P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_georgiopolitanum Achromobacter georgiopolitanum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E4P FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=~~SO4~~:~~SULFATE+ION~~'>~~SO4~~</scene>, <scene name='pdbligand=~~TRE~~:~~TREHALOSE~~'>~~TRE~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gt0\|2gt0]], [[2e4q\|2e4q]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2gt0\|2gt0]], [[2e4q\|2e4q]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [~~http~~://pdbe.org/2e4p PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2e4p PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2e4p ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [https://pdbe.org/2e4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [https://www.ebi.ac.uk/pdbsum/2e4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e4p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/BPHA3_PSES1 BPHA3_PSES1]] This protein seems to be a 2Fe-2S ferredoxin.	+	[[https://www.uniprot.org/uniprot/BPHA3_PSES1 BPHA3_PSES1]] This protein seems to be a 2Fe-2S ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:27, 11 March 2020

2020-03-11T08:27:22Z

←Older revision		Revision as of 08:27, 11 March 2020
Line 1:		Line 1:

	==Crystal structure of BphA3 (oxidized form)==		==Crystal structure of BphA3 (oxidized form)==
-	<StructureSection load='2e4p' size='340' side='right' caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='2e4p' size='340' side='right'caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_georgiopolitanum Achromobacter georgiopolitanum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2E4P FirstGlance]. <br>		<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_georgiopolitanum Achromobacter georgiopolitanum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2E4P FirstGlance]. <br>
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[Ferredoxin\|Ferredoxin]]	+	*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Achromobacter georgiopolitanum]]		[[Category: Achromobacter georgiopolitanum]]
		+	[[Category: Large Structures]]
	[[Category: Fukuda, M]]		[[Category: Fukuda, M]]
	[[Category: Ishida, T]]		[[Category: Ishida, T]]

OCA at 06:33, 6 June 2018

2018-06-06T06:33:31Z

←Older revision		Revision as of 06:33, 6 June 2018
Line 1:		Line 1:
		+
	==Crystal structure of BphA3 (oxidized form)==		==Crystal structure of BphA3 (oxidized form)==
	<StructureSection load='2e4p' size='340' side='right' caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2e4p' size='340' side='right' caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gt0\|2gt0]], [[2e4q\|2e4q]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gt0\|2gt0]], [[2e4q\|2e4q]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [http://pdbe.org/2e4p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [http://www.ebi.ac.uk/pdbsum/2e4p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [http://pdbe.org/2e4p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [http://www.ebi.ac.uk/pdbsum/2e4p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2e4p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e4/2e4p_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e4/2e4p_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 08:57, 8 February 2016

2016-02-08T08:57:03Z

←Older revision		Revision as of 08:57, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2e4p ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:57, 10 September 2015

2015-09-10T09:57:21Z

←Older revision		Revision as of 09:57, 10 September 2015
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	<StructureSection load='2e4p' size='340' side='right' caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2e4p' size='340' side='right' caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_sp. Pseudomonas sp.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2E4P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_georgiopolitanum Achromobacter georgiopolitanum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2E4P FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gt0\|2gt0]], [[2e4q\|2e4q]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gt0\|2gt0]], [[2e4q\|2e4q]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [http://www.ebi.ac.uk/pdbsum/2e4p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [http://pdbe.org/2e4p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [http://www.ebi.ac.uk/pdbsum/2e4p PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2e4p" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pseudomonas sp~~]]	+	[[Category: Achromobacter georgiopolitanum]]
	[[Category: Fukuda, M]]		[[Category: Fukuda, M]]
	[[Category: Ishida, T]]		[[Category: Ishida, T]]

OCA at 22:06, 24 December 2014

2014-12-24T22:06:45Z

←Older revision		Revision as of 22:06, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2E4P FirstGlance]. <br>		<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2E4P FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gt0\|2gt0]], [[2e4q\|2e4q]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gt0\|2gt0]], [[2e4q\|2e4q]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [http://www.ebi.ac.uk/pdbsum/2e4p PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [http://www.ebi.ac.uk/pdbsum/2e4p PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/BPHA3_PSES1 BPHA3_PSES1]] This protein seems to be a 2Fe-2S ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas sp.]]	+	[[Category: Pseudomonas sp]]
-	[[Category: Fukuda, M.]]	+	[[Category: Fukuda, M]]
-	[[Category: Ishida, T.]]	+	[[Category: Ishida, T]]
-	[[Category: Kimura, S.]]	+	[[Category: Kimura, S]]
-	[[Category: Kishigami, S.]]	+	[[Category: Kishigami, S]]
-	[[Category: Senda, M.]]	+	[[Category: Senda, M]]
-	[[Category: Senda, T.]]	+	[[Category: Senda, T]]
	[[Category: Electron transport]]		[[Category: Electron transport]]

OCA at 02:10, 29 September 2014

2014-09-29T02:10:20Z

←Older revision		Revision as of 02:10, 29 September 2014
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-	[[~~Image:~~2e4p.~~png~~\|~~left~~\|200px]]	+	==Crystal structure of BphA3 (oxidized form)==
		+	<StructureSection load='2e4p' size='340' side='right' caption='[[2e4p]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2e4p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2E4P FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2gt0\|2gt0]], [[2e4q\|2e4q]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4p OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2e4p RCSB], [http://www.ebi.ac.uk/pdbsum/2e4p PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e4/2e4p_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The electron transfer system of the biphenyl dioxygenase BphA, which is derived from Acidovorax sp. (formally Pseudomonas sp.) strain KKS102, is composed of an FAD-containing NADH-ferredoxin reductase (BphA4) and a Rieske-type [2Fe-2S] ferredoxin (BphA3). Biochemical studies have suggested that the whole electron transfer process from NADH to BphA3 comprises three consecutive elementary electron-transfer reactions, in which BphA3 and BphA4 interact transiently in a redox-dependent manner. Initially, BphA4 receives two electrons from NADH. The reduced BphA4 then delivers one electron each to the [2Fe-2S] cluster of the two BphA3 molecules through redox-dependent transient interactions. The reduced BphA3 transports the electron to BphA1A2, a terminal oxygenase, to support the activation of dioxygen for biphenyl dihydroxylation. In order to elucidate the molecular mechanisms of the sequential reaction and the redox-dependent interaction between BphA3 and BphA4, we determined the crystal structures of the productive BphA3-BphA4 complex, and of free BphA3 and BphA4 in all the redox states occurring in the catalytic cycle. The crystal structures of these reaction intermediates demonstrated that each elementary electron transfer induces a series of redox-dependent conformational changes in BphA3 and BphA4, which regulate the interaction between them. In addition, the conformational changes induced by the preceding electron transfer seem to induce the next electron transfer. The interplay of electron transfer and induced conformational changes seems to be critical to the sequential electron-transfer reaction from NADH to BphA3.

-	~~{{STRUCTURE_2e4p\| PDB=2e4p \| SCENE= }}~~	+	Molecular mechanism of the redox-dependent interaction between NADH-dependent ferredoxin reductase and Rieske-type [2Fe-2S] ferredoxin.,Senda M, Kishigami S, Kimura S, Fukuda M, Ishida T, Senda T J Mol Biol. 2007 Oct 19;373(2):382-400. Epub 2007 Aug 19. PMID:17850818<ref>PMID:17850818</ref>

-	~~===Crystal structure~~ of ~~BphA3 (oxidized form)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17850818}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2e4p]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pseudomonas_sp~~. ~~Pseudomonas sp.]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA].~~	+

	==See Also==		==See Also==
	*[[Ferredoxin\|Ferredoxin]]		*[[Ferredoxin\|Ferredoxin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017850818<~~/~~ref~~><~~ref group="xtra">PMID:016754990</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Pseudomonas sp.]]		[[Category: Pseudomonas sp.]]
	[[Category: Fukuda, M.]]		[[Category: Fukuda, M.]]

OCA at 09:37, 20 October 2012

2012-10-20T09:37:17Z

←Older revision		Revision as of 09:37, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[2e4p]] is a 2 chain structure ~~of [[Ferredoxin]]~~ with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA].	+	[[2e4p]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4P OCA].

	==See Also==		==See Also==

OCA at 23:27, 25 July 2012

2012-07-25T23:27:31Z

←Older revision		Revision as of 23:27, 25 July 2012
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	[[Image:2e4p.png\|left\|200px]]		[[Image:2e4p.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2e4p", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2e4p\| PDB=2e4p \| SCENE= }}		{{STRUCTURE_2e4p\| PDB=2e4p \| SCENE= }}

	===Crystal structure of BphA3 (oxidized form)===		===Crystal structure of BphA3 (oxidized form)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17850818}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17850818 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_17850818}}		{{ABSTRACT_PUBMED_17850818}}

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	==See Also==		==See Also==
-	*[[Ferredoxin]]	+	*[[Ferredoxin\|Ferredoxin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17850818~~</ref><ref group="xtra">PMID:~~16754990~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017850818</ref><ref group="xtra">PMID:016754990</ref><references group="xtra"/>
	[[Category: Pseudomonas sp.]]		[[Category: Pseudomonas sp.]]
	[[Category: Fukuda, M.]]		[[Category: Fukuda, M.]]