2ei1 - Revision history

OCA at 08:40, 25 October 2023

2023-10-25T08:40:49Z

←Older revision		Revision as of 08:40, 25 October 2023
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	<StructureSection load='2ei1' size='340' side='right'caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>		<StructureSection load='2ei1' size='340' side='right'caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Pseu8 Pseu8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._C18 Pseudomonas sp. C18]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.52Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69011 PSEU8])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [https://pdbe.org/2ei1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [https://www.ebi.ac.uk/pdbsum/2ei1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ei1 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [~~http~~://pdbe.org/2ei1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2ei1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2ei1 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NAHC_PSEU8 NAHC_PSEU8]] Involved in the naphthalene catabolic pathway. Catalyzes the meta-cleavage of 1,2-dihydroxynaphthalene (1,2-DHN) to yield 2-hydroxychromene-2-carboxylic acid (By similarity).	+	[https://www.uniprot.org/uniprot/NAHC_PSEU8 NAHC_PSEU8] Involved in the naphthalene catabolic pathway. Catalyzes the meta-cleavage of 1,2-dihydroxynaphthalene (1,2-DHN) to yield 2-hydroxychromene-2-carboxylic acid (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Pseu8~~]]	+	[[Category: Pseudomonas sp. C18]]
-	[[Category: Bolin~~, J T~~]]	+	[[Category: Bolin JT]]
-	[[Category: Colbert~~, C L~~]]	+	[[Category: Colbert CL]]
-	[[Category: Kelker~~, M S~~]]	+	[[Category: Kelker MS]]
-	[[Category: Neau~~, D B]]~~	+	[[Category: Neau DB]]
-	~~[[Category: Extradiol dioxygenase]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Protein substrate complex~~]]	+

OCA at 09:40, 9 September 2020

2020-09-09T09:40:16Z

←Older revision		Revision as of 09:40, 9 September 2020
Line 1:		Line 1:

-	==Anaerobic Crystal ~~Strucutre~~ Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene==	+	==Anaerobic Crystal Structure Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene==
-	<StructureSection load='2ei1' size='340' side='right' caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>	+	<StructureSection load='2ei1' size='340' side='right'caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseu8 Pseu8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseu8 Pseu8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69011 PSEU8])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69011 PSEU8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://pdbe.org/2ei1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ei1 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://pdbe.org/2ei1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ei1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:

	==See Also==		==See Also==
-	*[[Dioxygenase\|Dioxygenase]]	+	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pseu8]]		[[Category: Pseu8]]
	[[Category: Bolin, J T]]		[[Category: Bolin, J T]]

OCA at 06:52, 6 June 2018

2018-06-06T06:52:23Z

←Older revision		Revision as of 06:52, 6 June 2018
Line 1:		Line 1:
		+
	==Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene==		==Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene==
	<StructureSection load='2ei1' size='340' side='right' caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>		<StructureSection load='2ei1' size='340' side='right' caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69011 PSEU8])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69011 PSEU8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://pdbe.org/2ei1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://pdbe.org/2ei1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ei1 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/2ei1_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/2ei1_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ei1 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 13:01, 11 September 2015

2015-09-11T13:01:22Z

←Older revision		Revision as of 13:01, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2ei1' size='340' side='right' caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>		<StructureSection load='2ei1' size='340' side='right' caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_sp. Pseudomonas sp.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseu8 Pseu8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~306 Pseudomonas sp.~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=69011 PSEU8])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://pdbe.org/2ei1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pseudomonas sp~~]]	+	[[Category: Pseu8]]
	[[Category: Bolin, J T]]		[[Category: Bolin, J T]]
	[[Category: Colbert, C L]]		[[Category: Colbert, C L]]

OCA at 16:47, 25 December 2014

2014-12-25T16:47:58Z

←Older revision		Revision as of 16:47, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=306 Pseudomonas sp.])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=306 Pseudomonas sp.])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NAHC_PSEU8 NAHC_PSEU8]] Involved in the naphthalene catabolic pathway. Catalyzes the meta-cleavage of 1,2-dihydroxynaphthalene (1,2-DHN) to yield 2-hydroxychromene-2-carboxylic acid (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas sp.]]	+	[[Category: Pseudomonas sp]]
-	[[Category: Bolin, J T.]]	+	[[Category: Bolin, J T]]
-	[[Category: Colbert, C L.]]	+	[[Category: Colbert, C L]]
-	[[Category: Kelker, M S.]]	+	[[Category: Kelker, M S]]
-	[[Category: Neau, D B.]]	+	[[Category: Neau, D B]]
	[[Category: Extradiol dioxygenase]]		[[Category: Extradiol dioxygenase]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Protein substrate complex]]		[[Category: Protein substrate complex]]

OCA at 02:41, 30 September 2014

2014-09-30T02:41:28Z

←Older revision		Revision as of 02:41, 30 September 2014
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-	[[~~Image:~~2ei1.~~png~~\|~~left~~\|200px]]	+	==Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene==
		+	<StructureSection load='2ei1' size='340' side='right' caption='[[2ei1]], [[Resolution\|resolution]] 1.52Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2ei1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EI1 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2ehz\|2ehz]], [[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">doxg ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=306 Pseudomonas sp.])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ei1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2ei1 RCSB], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/2ei1_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

-	~~{{STRUCTURE_2ei1\| PDB~~=~~2ei1 \| SCENE= }}~~	+	==See Also==
-		+	*[[Dioxygenase\|Dioxygenase]]
-	~~===Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene~~===	+	__TOC__
-		+	</StructureSection>
-		+
-	~~==About this Structure==~~	+
-	[[~~2ei1~~]] ~~is a 1 chain structure with sequence from [http:~~/~~/en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA].~~	+
	[[Category: Pseudomonas sp.]]		[[Category: Pseudomonas sp.]]
	[[Category: Bolin, J T.]]		[[Category: Bolin, J T.]]

OCA: Protected "2ei1" [edit=sysop:move=sysop]

2013-01-06T11:53:56Z

Protected "2ei1" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:53, 6 January 2013

OCA at 11:53, 6 January 2013

2013-01-06T11:53:53Z

←Older revision		Revision as of 11:53, 6 January 2013
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-	{{Seed}}
	[[Image:2ei1.png\|left\|200px]]		[[Image:2ei1.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2ei1", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2ei1\| PDB=2ei1 \| SCENE= }}		{{STRUCTURE_2ei1\| PDB=2ei1 \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~2EI1~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA].	+	[[2ei1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA].
	[[Category: Pseudomonas sp.]]		[[Category: Pseudomonas sp.]]
	[[Category: Bolin, J T.]]		[[Category: Bolin, J T.]]
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	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Protein substrate complex]]		[[Category: Protein substrate complex]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:10:28 2009''

OCA at 20:10, 17 February 2009

2009-02-17T20:10:29Z

←Older revision		Revision as of 20:10, 17 February 2009
Line 1:		Line 1:
-	[[Image:2ei1.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:2ei1.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_2ei1\| PDB=2ei1 \| SCENE= }}		{{STRUCTURE_2ei1\| PDB=2ei1 \| SCENE= }}

-	~~'''~~Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene~~'''~~	+	===Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene===


	==About this Structure==		==About this Structure==
-	2EI1 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA].	+	2EI1 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EI1 OCA].
	[[Category: Pseudomonas sp.]]		[[Category: Pseudomonas sp.]]
-	[[Category: Single protein]]
	[[Category: Bolin, J T.]]		[[Category: Bolin, J T.]]
	[[Category: Colbert, C L.]]		[[Category: Colbert, C L.]]
Line 23:		Line 23:
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Protein substrate complex]]		[[Category: Protein substrate complex]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun May 4 02~~:34:~~58 2008~~''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 22:10:28 2009''

OCA at 23:34, 3 May 2008

2008-05-03T23:34:59Z

←Older revision		Revision as of 23:34, 3 May 2008
Line 1:		Line 1:
	[[Image:2ei1.jpg\|left\|200px]]		[[Image:2ei1.jpg\|left\|200px]]

-	~~{{Structure~~	+	<!--
-	~~\|PDB= 2ei1 \|SIZE=350\|CAPTION=~~ <~~scene name='initialview01'>2ei1</scene>, resolution 1.52Å~~	+	The line below this paragraph, containing "STRUCTURE_2ei1", creates the "Structure Box" on the page.
-	~~\|SITE= <scene name='pdbsite=AC1:Fe2+Binding+Site+For+Residue+A+399'>AC1</scene>~~, ~~<scene name='pdbsite=AC2:Mg+Binding+Site+For+Residue+A+398'>AC2</scene>~~, ~~<scene name='pdbsite=AC3:D1n+Binding+Site+For+Residue+A+1637'>AC3</scene> and <scene name='pdbsite=AC4:Gol+Binding+Site+For+Residue+A+901'>AC4</scene>~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	~~\|LIGAND= <scene name='pdbligand=D1N:NAPHTHALENE-1,2-DIOL'>D1N</scene>, <scene name='pdbligand=FE2:FE+~~(II)~~+ION'>FE2</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	~~\|ACTIVITY=~~	+	or leave the SCENE parameter empty for the default display.
-	~~\|GENE= doxg~~ (~~[http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=306 Pseudomonas sp.]~~)	+	-->
-	~~\|DOMAIN=~~	+	{{STRUCTURE_2ei1\| PDB=2ei1 \| SCENE= }}
-	~~\|RELATEDENTRY=[[2ehz\|2ehz]]~~, ~~[[2ei0\|2ei0]], [[2ei2\|2ei2]], [[2ei3\|2ei3]]~~	+
-	~~\|RESOURCES=<span class='plainlinks'>[http://oca~~.~~weizmann.ac.il/oca~~-~~docs/fgij/fg.htm?mol=2ei1 FirstGlance], [http://oca.weizmann.ac.il/oca~~-~~bin/ocaids?id~~=2ei1 ~~OCA], [http://www.ebi.ac.uk/pdbsum/2ei1 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId~~=~~2ei1 RCSB]</span>~~	+
-	}}	+

	'''Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene'''		'''Anaerobic Crystal Strucutre Analysis of the 1,2-dihydroxynaphthalene dioxygeanse of Pseudomonas sp. strain C18 complexes to 1,2-dihydroxynaphthalene'''
Line 23:		Line 20:
	[[Category: Kelker, M S.]]		[[Category: Kelker, M S.]]
	[[Category: Neau, D B.]]		[[Category: Neau, D B.]]
-	[[Category: ~~extradiol~~ dioxygenase]]	+	[[Category: Extradiol dioxygenase]]
-	[[Category: ~~oxidoreductase~~]]	+	[[Category: Oxidoreductase]]
-	[[Category: ~~protein~~ substrate complex]]	+	[[Category: Protein substrate complex]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 02:34:58 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31~~ 02:49:21 2008''	+