2f8h - Revision history

OCA at 09:22, 30 August 2023

2023-08-30T09:22:36Z

←Older revision		Revision as of 09:22, 30 August 2023
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	<StructureSection load='2f8h' size='340' side='right'caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='2f8h' size='340' side='right'caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_campestris"_pammel_1895 "bacillus~~ campestris~~" pammel 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F8H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_campestris Xanthomonas campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F8H FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1yh1\|1yh1]]~~, [[~~2f7v~~\|~~2f7v~~]]~~</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.~~16 3.5.1.16] </span>~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [https://pdbe.org/2f8h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [https://www.ebi.ac.uk/pdbsum/2f8h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f8h ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [https://pdbe.org/2f8h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [https://www.ebi.ac.uk/pdbsum/2f8h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f8h ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A0H2X6W0_XANC8 A0A0H2X6W0_XANC8] Catalyzes the deacetylation of N-acetyl-L-citrulline to produce L-citrulline. This is a step in an alternative arginine biosynthesis pathway.[HAMAP-Rule:MF_02236]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus campestris pammel 1895]]
-	[[Category: Acetylornithine deacetylase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Allewell~~, N M~~]]	+	[[Category: Xanthomonas campestris]]
-	[[Category: Roth, L]]	+	[[Category: Allewell NM]]
-	[[Category: Shi, D]]	+	[[Category: Roth L]]
-	[[Category: Tuchman, M]]	+	[[Category: Shi D]]
-	[[Category: Yu, X]]	+	[[Category: Tuchman M]]
-	~~[[Category: Alpha/beta]]~~	+	[[Category: Yu X]]
-	~~[[Category: Hydrolase~~]]	+

OCA at 16:02, 22 December 2021

2021-12-22T16:02:04Z

←Older revision		Revision as of 16:02, 22 December 2021
Line 3:		Line 3:
	<StructureSection load='2f8h' size='340' side='right'caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='2f8h' size='340' side='right'caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_campestris"_pammel_1895 "bacillus campestris" pammel 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2F8H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_campestris"_pammel_1895 "bacillus campestris" pammel 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F8H FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yh1\|1yh1]], [[2f7v\|2f7v]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1yh1\|1yh1]], [[2f7v\|2f7v]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [~~http~~://pdbe.org/2f8h PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2f8h PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2f8h ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [https://pdbe.org/2f8h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [https://www.ebi.ac.uk/pdbsum/2f8h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f8h ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 10:46, 18 March 2020

2020-03-18T10:46:52Z

←Older revision		Revision as of 10:46, 18 March 2020
Line 1:		Line 1:

	==Structure of acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form==		==Structure of acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form==
-	<StructureSection load='2f8h' size='340' side='right' caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='2f8h' size='340' side='right'caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_campestris"_pammel_1895 "bacillus campestris" pammel 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F8H FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_campestris"_pammel_1895 "bacillus campestris" pammel 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F8H FirstGlance]. <br>
Line 33:		Line 33:
	[[Category: Bacillus campestris pammel 1895]]		[[Category: Bacillus campestris pammel 1895]]
	[[Category: Acetylornithine deacetylase]]		[[Category: Acetylornithine deacetylase]]
		+	[[Category: Large Structures]]
	[[Category: Allewell, N M]]		[[Category: Allewell, N M]]
	[[Category: Roth, L]]		[[Category: Roth, L]]

OCA at 09:00, 14 June 2018

2018-06-14T09:00:42Z

←Older revision		Revision as of 09:00, 14 June 2018
Line 1:		Line 1:
		+
	==Structure of acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form==		==Structure of acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form==
	<StructureSection load='2f8h' size='340' side='right' caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='2f8h' size='340' side='right' caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yh1\|1yh1]], [[2f7v\|2f7v]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yh1\|1yh1]], [[2f7v\|2f7v]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [http://pdbe.org/2f8h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [http://www.ebi.ac.uk/pdbsum/2f8h PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [http://pdbe.org/2f8h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [http://www.ebi.ac.uk/pdbsum/2f8h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2f8h ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f8/2f8h_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f8/2f8h_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:08, 7 February 2016

2016-02-07T07:08:43Z

←Older revision		Revision as of 07:08, 7 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2f8h ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:01, 9 September 2015

2015-09-09T23:01:37Z

←Older revision		Revision as of 23:01, 9 September 2015
Line 2:		Line 2:
	<StructureSection load='2f8h' size='340' side='right' caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='2f8h' size='340' side='right' caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Xanthomonas_campestris Xanthomonas~~ campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F8H FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_campestris"_pammel_1895 "bacillus campestris" pammel 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F8H FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yh1\|1yh1]], [[2f7v\|2f7v]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yh1\|1yh1]], [[2f7v\|2f7v]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [http://www.ebi.ac.uk/pdbsum/2f8h PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [http://pdbe.org/2f8h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [http://www.ebi.ac.uk/pdbsum/2f8h PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2f8h" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacillus campestris pammel 1895]]
	[[Category: Acetylornithine deacetylase]]		[[Category: Acetylornithine deacetylase]]
-	[[Category: Xanthomonas campestris]]
	[[Category: Allewell, N M]]		[[Category: Allewell, N M]]
	[[Category: Roth, L]]		[[Category: Roth, L]]

OCA at 08:24, 16 January 2015

2015-01-16T08:24:33Z

←Older revision		Revision as of 08:24, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris Xanthomonas campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F8H FirstGlance]. <br>		<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris Xanthomonas campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F8H FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yh1\|1yh1]], [[2f7v\|2f7v]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yh1\|1yh1]], [[2f7v\|2f7v]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [http://www.ebi.ac.uk/pdbsum/2f8h PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [http://www.ebi.ac.uk/pdbsum/2f8h PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	[[Category: Acetylornithine deacetylase]]		[[Category: Acetylornithine deacetylase]]
	[[Category: Xanthomonas campestris]]		[[Category: Xanthomonas campestris]]
-	[[Category: Allewell, N M.]]	+	[[Category: Allewell, N M]]
-	[[Category: Roth, L.]]	+	[[Category: Roth, L]]
-	[[Category: Shi, D.]]	+	[[Category: Shi, D]]
-	[[Category: Tuchman, M.]]	+	[[Category: Tuchman, M]]
-	[[Category: Yu, X.]]	+	[[Category: Yu, X]]
	[[Category: Alpha/beta]]		[[Category: Alpha/beta]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 01:57, 30 September 2014

2014-09-30T01:57:20Z

←Older revision		Revision as of 01:57, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2f8h.~~png~~\|~~left~~\|200px]]	+	==Structure of acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form==
		+	<StructureSection load='2f8h' size='340' side='right' caption='[[2f8h]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2f8h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris Xanthomonas campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2F8H FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yh1\|1yh1]], [[2f7v\|2f7v]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Acetylornithine_deacetylase Acetylornithine deacetylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.16 3.5.1.16] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2f8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f8h OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2f8h RCSB], [http://www.ebi.ac.uk/pdbsum/2f8h PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f8/2f8h_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of a novel acetylcitrulline deacetylase from the plant pathogen Xanthomonas campestris has been solved by multiple-wavelength anomalous dispersion (MAD) using crystals grown from selenomethionine-substituted protein and refined at 1.75 A resolution. The asymmetric unit of the crystal contains one monomer consisting of two domains, a catalytic domain and a dimerization domain. The catalytic domain is able to bind a single Co(II) ion at the active site with no change in conformation. The dimerization domain forms an interface between two monomers related by a crystallographic two-fold symmetry axis. The interface is maintained by hydrophobic interactions between helices and hydrogen bonding between two beta strands that form a continuous beta sheet across the dimer interface. Because the dimers are also related by two-fold crystallographic axes, they pack together across the crystal via the dimerization domain, suggesting that higher order oligomers may form in solution. The polypeptide fold of the monomer is similar to the fold of Pseudomonas sp. carboxypeptidase G2 and Neisseria meningitidis succinyl diaminopimelate desuccinylase. Structural comparison among these enzymes allowed modeling of substrate binding and suggests a possible catalytic mechanism, in which Glu130 functions as a bifunctional general acid-base catalyst and the metal ion polarizes the carbonyl of the acetyl group.

-	~~{{STRUCTURE_2f8h\| PDB=2f8h \| SCENE= }}~~	+	Structure of a novel N-acetyl-L-citrulline deacetylase from Xanthomonas campestris.,Shi D, Yu X, Roth L, Tuchman M, Allewell NM Biophys Chem. 2007 Mar;126(1-3):86-93. Epub 2006 Jun 5. PMID:16750290<ref>PMID:16750290</ref>

-	~~===Structure~~ of ~~acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16750290}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2f8h]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Xanthomonas_campestris Xanthomonas campestris]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016750290<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Acetylornithine deacetylase]]		[[Category: Acetylornithine deacetylase]]
	[[Category: Xanthomonas campestris]]		[[Category: Xanthomonas campestris]]

OCA: Protected "2f8h" [edit=sysop:move=sysop]

2013-01-07T11:50:51Z

Protected "2f8h" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:50, 7 January 2013

OCA at 11:50, 7 January 2013

2013-01-07T11:50:49Z

←Older revision		Revision as of 11:50, 7 January 2013
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	[[Image:2f8h.png\|left\|200px]]		[[Image:2f8h.png\|left\|200px]]

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	{{STRUCTURE_2f8h\| PDB=2f8h \| SCENE= }}		{{STRUCTURE_2f8h\| PDB=2f8h \| SCENE= }}

	===Structure of acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form===		===Structure of acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16750290}}, adds the Publication Abstract to the page
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	{{ABSTRACT_PUBMED_16750290}}		{{ABSTRACT_PUBMED_16750290}}

	==About this Structure==		==About this Structure==
-	~~2F8H~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris Xanthomonas campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA].	+	[[2f8h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanthomonas_campestris Xanthomonas campestris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F8H OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16750290~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016750290</ref><references group="xtra"/>
	[[Category: Acetylornithine deacetylase]]		[[Category: Acetylornithine deacetylase]]
	[[Category: Xanthomonas campestris]]		[[Category: Xanthomonas campestris]]
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	[[Category: Yu, X.]]		[[Category: Yu, X.]]
	[[Category: Alpha/beta]]		[[Category: Alpha/beta]]
-		+	[[Category: Hydrolase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 12:10:14 2009''~~	+