2fiq - Revision history

OCA at 15:27, 3 March 2021

2021-03-03T15:27:36Z

←Older revision		Revision as of 15:27, 3 March 2021
Line 1:		Line 1:

	==Crystal structure of putative tagatose 6-phosphate kinase==		==Crystal structure of putative tagatose 6-phosphate kinase==
-	<StructureSection load='2fiq' size='340' side='right' caption='[[2fiq]]~~, [[Resolution\|resolution]] 2.25Å~~' scene=''>	+	<StructureSection load='2fiq' size='340' side='right'caption='[[2fiq]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[2fiq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Eco57 Eco57].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2FIQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FIQ FirstGlance]. <br>
-	</td></tr>~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [https://pdbe.org/2fiq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [https://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fiq ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECs2898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 ECO57])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose_kinase Tagatose kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.101 2.7.1.101] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [~~http~~://pdbe.org/2fiq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2fiq ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>	+
	</table>		</table>
-	== Function ==
-	[[http://www.uniprot.org/uniprot/GATZ_ECOLI GATZ_ECOLI]] Component of the tagatose-1,6-bisphosphate aldolase GatYZ that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of GatY. When expressed alone, GatZ does not show any aldolase activity. Is involved in the catabolism of galactitol.<ref>PMID:8955298</ref> <ref>PMID:11976750</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/2fiq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/2fiq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 16:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fiq ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fiq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Eco57]]~~	+	[[Category: Large Structures]]
-	~~[[Category: Tagatose kinase~~]]	+	[[Category: Almo SC]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Burley SK]]
-	[[Category: Burley~~, S K~~]]	+	[[Category: Fedorov E]]
-	[[Category: Fedorov, E]]	+	[[Category: Ramagopal UA]]
-	~~[[Category: Structural genomic~~]]	+
-	[[Category: Ramagopal~~, U A]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 07:39, 18 October 2017

2017-10-18T07:39:11Z

←Older revision		Revision as of 07:39, 18 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of putative tagatose 6-phosphate kinase==		==Crystal structure of putative tagatose 6-phosphate kinase==
	<StructureSection load='2fiq' size='340' side='right' caption='[[2fiq]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='2fiq' size='340' side='right' caption='[[2fiq]], [[Resolution\|resolution]] 2.25Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECs2898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 ECO57])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECs2898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 ECO57])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose_kinase Tagatose kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.101 2.7.1.101] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose_kinase Tagatose kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.101 2.7.1.101] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://pdbe.org/2fiq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://pdbe.org/2fiq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fiq ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fiq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 13:37, 11 September 2015

2015-09-11T13:37:02Z

←Older revision		Revision as of 13:37, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2fiq' size='340' side='right' caption='[[2fiq]], [[Resolution\|resolution]] 2.25Å' scene=''>		<StructureSection load='2fiq' size='340' side='right' caption='[[2fiq]], [[Resolution\|resolution]] 2.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fiq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia coli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FIQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fiq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Eco57 Eco57]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FIQ FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECs2898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~562 Escherichia coli~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECs2898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83334 ECO57])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose_kinase Tagatose kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.101 2.7.1.101] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose_kinase Tagatose kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.101 2.7.1.101] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://pdbe.org/2fiq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia coli~~]]	+	[[Category: Eco57]]
	[[Category: Tagatose kinase]]		[[Category: Tagatose kinase]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]

OCA at 17:10, 25 December 2014

2014-12-25T17:10:29Z

←Older revision		Revision as of 17:10, 25 December 2014
Line 8:		Line 8:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GATZ_ECOLI GATZ_ECOLI]] Component of the tagatose-1,6-bisphosphate aldolase GatYZ that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of GatY. When expressed alone, GatZ does not show any aldolase activity. Is involved in the catabolism of galactitol.<ref>PMID:8955298</ref> <ref>PMID:11976750</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 18:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 12:29, 6 November 2014

2014-11-06T12:29:09Z

←Older revision		Revision as of 12:29, 6 November 2014
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Escherichia coli]]
	[[Category: Tagatose kinase]]		[[Category: Tagatose kinase]]
		+	[[Category: Almo, S C]]
		+	[[Category: Burley, S K]]
	[[Category: Fedorov, E]]		[[Category: Fedorov, E]]
		+	[[Category: Structural genomic]]
		+	[[Category: Ramagopal, U A]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: PSI, Protein structure initiative]]
		+	[[Category: Transferase]]

OCA at 11:46, 6 November 2014

2014-11-06T11:46:30Z

←Older revision		Revision as of 11:46, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fiq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FIQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fiq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FIQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECs2898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECs2898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose_kinase Tagatose kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.101 2.7.1.101] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose_kinase Tagatose kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.101 2.7.1.101] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Escherichia coli]]
	[[Category: Tagatose kinase]]		[[Category: Tagatose kinase]]
-	~~[[Category: Almo, S C.]]~~	+	[[Category: Fedorov, E]]
-	~~[[Category: Burley, S K.]]~~	+
-	[[Category: Fedorov, E~~.]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Ramagopal, U A.]]~~	+
-	~~[[Category: New york sgx research center for structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 23:54, 29 September 2014

2014-09-29T23:54:52Z

←Older revision		Revision as of 23:54, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:2fiq.png\|left\|200px]]~~	+	==Crystal structure of putative tagatose 6-phosphate kinase==
-		+	<StructureSection load='2fiq' size='340' side='right' caption='[[2fiq]], [[Resolution\|resolution]] 2.25Å' scene=''>
-	~~{{STRUCTURE_2fiq\| PDB=2fiq \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2fiq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FIQ FirstGlance]. <br>
-	===Crystal structure of putative tagatose 6-phosphate kinase===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ECs2898 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tagatose_kinase Tagatose kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.101 2.7.1.101] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fiq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fiq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fiq RCSB], [http://www.ebi.ac.uk/pdbsum/2fiq PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2fiq TOPSAN]</span></td></tr>
-	[[2fiq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fi/2fiq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Tagatose kinase]]		[[Category: Tagatose kinase]]

OCA: Protected "2fiq" [edit=sysop:move=sysop]

2013-01-07T12:56:13Z

Protected "2fiq" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:56, 7 January 2013

OCA at 12:56, 7 January 2013

2013-01-07T12:56:09Z

←Older revision		Revision as of 12:56, 7 January 2013
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-	{{Seed}}
	[[Image:2fiq.png\|left\|200px]]		[[Image:2fiq.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2fiq\| PDB=2fiq \| SCENE= }}		{{STRUCTURE_2fiq\| PDB=2fiq \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~2FIQ~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA].	+	[[2fiq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Tagatose kinase]]		[[Category: Tagatose kinase]]
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	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Fedorov, E.]]		[[Category: Fedorov, E.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Ramagopal, U A.]]		[[Category: Ramagopal, U A.]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-		+	[[Category: Transferase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 14:57:16 2008''~~	+

OCA at 12:57, 16 November 2008

2008-11-16T12:57:17Z

←Older revision		Revision as of 12:57, 16 November 2008
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	==About this Structure==		==About this Structure==
-	2FIQ is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA].	+	2FIQ is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FIQ OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Single protein]]
	[[Category: Tagatose kinase]]		[[Category: Tagatose kinase]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28 22~~:41:14 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 14:57:16 2008''