2fs3 - Revision history

OCA at 14:54, 20 September 2023

2023-09-20T14:54:24Z

←Older revision		Revision as of 14:54, 20 September 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [https://pdbe.org/2fs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [https://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 4.2Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [https://pdbe.org/2fs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [https://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 09:35, 19 April 2023

2023-04-19T09:35:55Z

←Older revision		Revision as of 09:35, 19 April 2023
Line 3:		Line 3:
	<SX load='2fs3' size='340' side='right' viewer='molstar' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>		<SX load='2fs3' size='340' side='right' viewer='molstar' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bphk7 Bphk7~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</div></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [https://pdbe.org/2fs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [https://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>~~	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [https://pdbe.org/2fs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [https://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: ~~Bphk7~~]]	+	[[Category: Escherichia virus HK97]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cheng, N]]	+	[[Category: Cheng N]]
-	[[Category: Conway~~, J F~~]]	+	[[Category: Conway JF]]
-	[[Category: Duda~~, R L~~]]	+	[[Category: Duda RL]]
-	[[Category: Firek~~, B A~~]]	+	[[Category: Firek BA]]
-	[[Category: Gan, L]]	+	[[Category: Gan L]]
-	[[Category: Hendrix~~, R W~~]]	+	[[Category: Hendrix RW]]
-	[[Category: Johnson~~, J E~~]]	+	[[Category: Johnson JE]]
-	[[Category: Lander, G]]	+	[[Category: Lander G]]
-	[[Category: Liljas, L]]	+	[[Category: Liljas L]]
-	[[Category: Speir~~, J A]]~~	+	[[Category: Speir JA]]
-	~~[[Category: Bacteriophage]]~~	+
-	~~[[Category: Capsid]]~~	+
-	~~[[Category: Expansion intermediate]]~~	+
-	~~[[Category: Hk97]]~~	+
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 17:27, 20 October 2021

2021-10-20T17:27:25Z

←Older revision		Revision as of 17:27, 20 October 2021
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	<SX load='2fs3' size='340' side='right' viewer='molstar' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>		<SX load='2fs3' size='340' side='right' viewer='molstar' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [~~http~~://pdbe.org/2fs3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [https://pdbe.org/2fs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [https://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 16:50, 10 April 2020

2020-04-10T16:50:51Z

←Older revision		Revision as of 16:50, 10 April 2020
Line 3:		Line 3:
	<SX load='2fs3' size='340' side='right' viewer='molstar' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>		<SX load='2fs3' size='340' side='right' viewer='molstar' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://pdbe.org/2fs3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://pdbe.org/2fs3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 04:23, 5 March 2020

2020-03-05T04:23:05Z

←Older revision		Revision as of 04:23, 5 March 2020
Line 1:		Line 1:

	==Bacteriophage HK97 K169Y Head I==		==Bacteriophage HK97 K169Y Head I==
-	<~~StructureSection~~ load='2fs3' size='340' side='right' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>	+	<SX load='2fs3' size='340' side='right' viewer='molstar' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fs/2fs3_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fs/2fs3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Bphk7]]		[[Category: Bphk7]]
		+	[[Category: Large Structures]]
	[[Category: Cheng, N]]		[[Category: Cheng, N]]
	[[Category: Conway, J F]]		[[Category: Conway, J F]]

OCA at 07:43, 18 October 2017

2017-10-18T07:43:36Z

←Older revision		Revision as of 07:43, 18 October 2017
Line 1:		Line 1:
		+
	==Bacteriophage HK97 K169Y Head I==		==Bacteriophage HK97 K169Y Head I==
	<StructureSection load='2fs3' size='340' side='right' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>		<StructureSection load='2fs3' size='340' side='right' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://pdbe.org/2fs3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://pdbe.org/2fs3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2fs3 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fs3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:29, 11 September 2015

2015-09-11T09:29:54Z

←Older revision		Revision as of 09:29, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2fs3' size='340' side='right' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>		<StructureSection load='2fs3' size='340' side='right' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_hk97 Enterobacteria phage hk97~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Bphk7 Bphk7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 ~~Enterobacteria phage HK97~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 BPHK7])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://pdbe.org/2fs3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2fs3" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Enterobacteria phage hk97~~]]	+	[[Category: Bphk7]]
	[[Category: Cheng, N]]		[[Category: Cheng, N]]
	[[Category: Conway, J F]]		[[Category: Conway, J F]]

OCA at 08:37, 16 January 2015

2015-01-16T08:37:52Z

←Older revision		Revision as of 08:37, 16 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 Enterobacteria phage HK97])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 Enterobacteria phage HK97])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage hk97]]		[[Category: Enterobacteria phage hk97]]
-	[[Category: Cheng, N.]]	+	[[Category: Cheng, N]]
-	[[Category: Conway, J F.]]	+	[[Category: Conway, J F]]
-	[[Category: Duda, R L.]]	+	[[Category: Duda, R L]]
-	[[Category: Firek, B A.]]	+	[[Category: Firek, B A]]
-	[[Category: Gan, L.]]	+	[[Category: Gan, L]]
-	[[Category: Hendrix, R W.]]	+	[[Category: Hendrix, R W]]
-	[[Category: Johnson, J E.]]	+	[[Category: Johnson, J E]]
-	[[Category: Lander, G.]]	+	[[Category: Lander, G]]
-	[[Category: Liljas, L.]]	+	[[Category: Liljas, L]]
-	[[Category: Speir, J A.]]	+	[[Category: Speir, J A]]
	[[Category: Bacteriophage]]		[[Category: Bacteriophage]]
	[[Category: Capsid]]		[[Category: Capsid]]

OCA at 10:11, 30 September 2014

2014-09-30T10:11:11Z

←Older revision		Revision as of 10:11, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2fs3.~~png~~\|~~left~~\|200px]]	+	==Bacteriophage HK97 K169Y Head I==
		+	<StructureSection load='2fs3' size='340' side='right' caption='[[2fs3]], [[Resolution\|resolution]] 4.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2fs3]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2FS3 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2frp\|2frp]], [[2fsy\|2fsy]], [[2ft1\|2ft1]], [[2fte\|2fte]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=37554 Enterobacteria phage HK97])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2fs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fs3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2fs3 RCSB], [http://www.ebi.ac.uk/pdbsum/2fs3 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fs/2fs3_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Maturation of the bacteriophage HK97 capsid from a precursor (Prohead II) to the mature state (Head II) involves a 60 A radial expansion. The mature particle is formed by 420 copies of the major capsid protein organized on a T = 7 laevo lattice with each subunit covalently crosslinked to two neighbors. Well-characterized pH 4 expansion intermediates make HK97 valuable for investigating quaternary structural dynamics. Here, we use X-ray crystallography and cryo-EM to demonstrate that in the final transition in maturation (requiring neutral pH), pentons in Expansion Intermediate IV (EI-IV) reversibly sample 14 A translations and 6 degrees rotations relative to a fixed hexon lattice. The limit of this trajectory corresponds to the Head II conformation that is secured at this extent only by the formation of the final class of covalent crosslinks. Mutants that cannot crosslink or EI-IV particles that have been rendered incapable of forming the final crosslink remain in the EI-IV state.

-	~~{{STRUCTURE_2fs3\| PDB=2fs3 \| SCENE= }}~~	+	Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM.,Gan L, Speir JA, Conway JF, Lander G, Cheng N, Firek BA, Hendrix RW, Duda RL, Liljas L, Johnson JE Structure. 2006 Nov;14(11):1655-65. PMID:17098191<ref>PMID:17098191</ref>

-	~~===Bacteriophage HK97 K169Y Head I===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17098191}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2fs3]] is~~ a ~~7 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2FS3 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017098191<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Enterobacteria phage hk97]]		[[Category: Enterobacteria phage hk97]]
	[[Category: Cheng, N.]]		[[Category: Cheng, N.]]

OCA: Protected "2fs3" [edit=sysop:move=sysop]

2013-01-07T14:39:30Z

Protected "2fs3" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:39, 7 January 2013