2gbs - Revision history

OCA at 18:58, 29 May 2024

2024-05-29T18:58:35Z

←Older revision		Revision as of 18:58, 29 May 2024
Line 1:		Line 1:

	==NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3==		==NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3==
-	<StructureSection load='2gbs' size='340' side='right'caption='[[2gbs~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='2gbs' size='340' side='right'caption='[[2gbs]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Rhopa Rhopa~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GBS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_CGA009 Rhodopseudomonas palustris CGA009]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GBS FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>rpa0253 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~258594 RHOPA])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [https://pdbe.org/2gbs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [https://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gbs ProSAT], [https://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [https://pdbe.org/2gbs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [https://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gbs ProSAT], [https://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q6ND56_RHOPA Q6ND56_RHOPA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Rhopa~~]]	+	[[Category: Rhodopseudomonas palustris CGA009]]
-	[[Category: Acton~~, T B~~]]	+	[[Category: Acton TB]]
-	[[Category: Chen, Y]]	+	[[Category: Chen Y]]
-	[[Category: Ciano, M]]	+	[[Category: Ciano M]]
-	[[Category: Conover, K]]	+	[[Category: Conover K]]
-	[[Category: Cort~~, J R~~]]	+	[[Category: Cort JR]]
-	[[Category: Kennedy~~, M A~~]]	+	[[Category: Kennedy MA]]
-	[[Category: Ma~~, L C~~]]	+	[[Category: Ma LC]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Montelione GT]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Ramelot TA]]
-	[[Category: Ramelot~~, T A~~]]	+	[[Category: Xiao R]]
-	[[Category: Xiao, R]]	+
-	~~[[Category: Alpha-beta]]~~	+
-	~~[[Category: Cog2947]]~~	+
-	~~[[Category: Nesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Rpa0253]]~~	+
-	~~[[Category: Rpr3]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 18:55, 10 March 2021

2021-03-10T18:55:20Z

←Older revision		Revision as of 18:55, 10 March 2021
Line 1:		Line 1:

	==NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3==		==NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3==
-	<StructureSection load='2gbs' size='340' side='right' caption='[[2gbs]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='2gbs' size='340' side='right'caption='[[2gbs]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhopa Rhopa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2GBS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhopa Rhopa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GBS FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [~~http~~://pdbe.org/2gbs PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2gbs ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [https://pdbe.org/2gbs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [https://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gbs ProSAT], [https://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Rhopa]]		[[Category: Rhopa]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]

OCA at 06:48, 20 June 2018

2018-06-20T06:48:44Z

←Older revision		Revision as of 06:48, 20 June 2018
Line 1:		Line 1:
		+
	==NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3==		==NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3==
	<StructureSection load='2gbs' size='340' side='right' caption='[[2gbs]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2gbs' size='340' side='right' caption='[[2gbs]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhopa Rhopa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GBS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhopa Rhopa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GBS FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [http://pdbe.org/2gbs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [http://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [http://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [http://pdbe.org/2gbs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [http://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2gbs ProSAT], [http://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gb/2gbs_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gb/2gbs_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 16:12, 8 February 2016

2016-02-08T16:12:50Z

←Older revision		Revision as of 16:12, 8 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gbs ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 13:16, 10 September 2015

2015-09-10T13:16:58Z

←Older revision		Revision as of 13:16, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2gbs' size='340' side='right' caption='[[2gbs]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='2gbs' size='340' side='right' caption='[[2gbs]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Rhodopseudomonas_palustris Rhodopseudomonas palustris~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GBS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhopa Rhopa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GBS FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=~~1076 Rhodopseudomonas palustris~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=258594 RHOPA])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [http://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [http://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [http://pdbe.org/2gbs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [http://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [http://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2gbs" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Rhodopseudomonas palustris~~]]	+	[[Category: Rhopa]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]

OCA at 00:33, 25 December 2014

2014-12-25T00:33:54Z

←Older revision		Revision as of 00:33, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GBS FirstGlance]. <br>		<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GBS FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1076 Rhodopseudomonas palustris])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1076 Rhodopseudomonas palustris])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [http://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [http://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [http://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [http://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Rhodopseudomonas palustris]]		[[Category: Rhodopseudomonas palustris]]
-	[[Category: Acton, T B.]]	+	[[Category: Acton, T B]]
-	[[Category: Chen, Y.]]	+	[[Category: Chen, Y]]
-	[[Category: Ciano, M.]]	+	[[Category: Ciano, M]]
-	[[Category: Conover, K.]]	+	[[Category: Conover, K]]
-	[[Category: Cort, J R.]]	+	[[Category: Cort, J R]]
-	[[Category: Kennedy, M A.]]	+	[[Category: Kennedy, M A]]
-	[[Category: Ma, L C.]]	+	[[Category: Ma, L C]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Ramelot, T A.]]	+	[[Category: Ramelot, T A]]
-	[[Category: Xiao, R.]]	+	[[Category: Xiao, R]]
	[[Category: Alpha-beta]]		[[Category: Alpha-beta]]
	[[Category: Cog2947]]		[[Category: Cog2947]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: ~~Northeast structural genomics consortium]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi~~]]	+
	[[Category: Rpa0253]]		[[Category: Rpa0253]]
	[[Category: Rpr3]]		[[Category: Rpr3]]
-	[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 07:46, 30 September 2014

2014-09-30T07:46:09Z

←Older revision		Revision as of 07:46, 30 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2gbs.~~png\|left~~\|200px]]	+	==NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3==
		+	<StructureSection load='2gbs' size='340' side='right' caption='[[2gbs]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2GBS FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">rpa0253 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1076 Rhodopseudomonas palustris])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2gbs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gbs OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2gbs RCSB], [http://www.ebi.ac.uk/pdbsum/2gbs PDBsum], [http://www.topsan.org/Proteins/NESGC/2gbs TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gb/2gbs_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We report on several proteins recently solved by structural genomics consortia, in particular by the Northeast Structural Genomics consortium (NESG). The proteins considered in this study differ substantially in their sequences but they share a similar structural core, characterized by a pseudobarrel five-stranded beta sheet. This core corresponds to the PUA domain-like architecture in the SCOP database. By connecting sequence information with structural knowledge, we characterize a new subgroup of these proteins that we propose to be distinctly different from previously described PUA domain-like domains such as PUA proper or ASCH. We refer to these newly defined domains as EVE. Although EVE may have retained the ability of PUA domains to bind RNA, the available experimental and computational data suggests that both the details of its molecular function and its cellular function differ from those of other PUA domain-like domains. This study of EVE and its relatives illustrates how the combination of structure and genomics creates new insights by connecting a cornucopia of structures that map to the same evolutionary potential. Primary sequence information alone would have not been sufficient to reveal these evolutionary links.

-	~~{{STRUCTURE_2gbs\| PDB=2gbs \| SCENE= }}~~	+	Structural genomics reveals EVE as a new ASCH/PUA-related domain.,Bertonati C, Punta M, Fischer M, Yachdav G, Forouhar F, Zhou W, Kuzin AP, Seetharaman J, Abashidze M, Ramelot TA, Kennedy MA, Cort JR, Belachew A, Hunt JF, Tong L, Montelione GT, Rost B Proteins. 2009 May 15;75(3):760-73. PMID:19191354<ref>PMID:19191354</ref>

-	~~===NMR structure~~ of ~~Rpa0253 from Rhodopseudomonas palustris~~. ~~Northeast structural genomics consortium target RpR3===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_19191354}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2gbs]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:019191354<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Rhodopseudomonas palustris]]		[[Category: Rhodopseudomonas palustris]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]

OCA at 12:54, 7 January 2013

2013-01-07T12:54:00Z

←Older revision		Revision as of 12:54, 7 January 2013
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	[[Image:2gbs.png\|left\|200px]]		[[Image:2gbs.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2gbs\| PDB=2gbs \| SCENE= }}		{{STRUCTURE_2gbs\| PDB=2gbs \| SCENE= }}

	===NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3===		===NMR structure of Rpa0253 from Rhodopseudomonas palustris. Northeast structural genomics consortium target RpR3===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_19191354}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 19191354 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_19191354}}		{{ABSTRACT_PUBMED_19191354}}

	==About this Structure==		==About this Structure==
-	[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Rhodopseudomonas_palustris_cga009~~ Rhodopseudomonas palustris ~~cga009~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA].	+	[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris Rhodopseudomonas palustris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~19191354~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:019191354</ref><references group="xtra"/>
-	[[Category: Rhodopseudomonas palustris ~~cga009~~]]	+	[[Category: Rhodopseudomonas palustris]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]
	[[Category: Chen, Y.]]		[[Category: Chen, Y.]]

OCA: Protected "2gbs" [edit=sysop:move=sysop]

2010-12-29T18:30:30Z

Protected "2gbs" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:30, 29 December 2010

OCA at 18:30, 29 December 2010

2010-12-29T18:30:29Z

←Older revision		Revision as of 18:30, 29 December 2010
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-	{{Seed}}
	[[Image:2gbs.png\|left\|200px]]		[[Image:2gbs.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~2GBS~~ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_cga009 Rhodopseudomonas palustris cga009]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA].	+	[[2gbs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodopseudomonas_palustris_cga009 Rhodopseudomonas palustris cga009]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GBS OCA].

	==Reference==		==Reference==
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Jun 10 10:51:00 2010''